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ORCIDJosé-Jesús Fernández
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2020 – today
- 2024
[j37]Vicente González Ruiz, Juan José Moreno, José-Jesús Fernández:
Acceleration of 3D feature-enhancing noise filtering in hybrid CPU/GPU systems. J. Supercomput. 80(9): 12727-12742 (2024)- 2023
- [j36]Vicente González Ruiz, José-Jesús Fernández:
FlowDenoising: Structure-preserving denoising in 3D electron microscopy (3DEM). SoftwareX 23: 101413 (2023) - 2022
- [j35]Vicente González Ruiz, J. P. García-Ortiz, M. R. Fernández-Fernández, José-Jesús Fernández
:
Optical flow driven interpolation for isotropic FIB-SEM reconstructions. Comput. Methods Programs Biomed. 221: 106856 (2022) - [j34]José-Jesús Fernández, Antonio Martínez-Sánchez:
Computational methods for three-dimensional electron microscopy (3DEM). Comput. Methods Programs Biomed. 225: 107039 (2022) - [j33]Juan José Moreno, Ester M. Garzón, José-Jesús Fernández, Antonio Martínez-Sánchez:
HPC enables efficient 3D membrane segmentation in electron tomography. J. Supercomput. 78(17): 19097-19113 (2022) - 2020
- [j32]José-Jesús Fernández, Teobaldo E. Torres, Eva Martin-Solana, Gerardo F. Goya, Maria-Rosario Fernandez-Fernandez:
PolishEM: image enhancement in FIB-SEM. Bioinform. 36(12): 3947-3948 (2020)
2010 – 2019
- 2018
- [j31]Juan José Moreno, Antonio Martínez-Sánchez, José Antonio Martínez, Ester M. Garzón, José-Jesús Fernández:
TomoEED: fast edge-enhancing denoising of tomographic volumes. Bioinform. 34(21): 3776-3778 (2018) - 2012
- [j30]Francisco Vázquez, José-Jesús Fernández, Ester M. Garzón:
Automatic tuning of the sparse matrix vector product on GPUs based on the ELLR-T approach. Parallel Comput. 38(8): 408-420 (2012) - [c31]Antonio Martínez-Sánchez, Inmaculada García, José-Jesús Fernández:
A generic model for ridges: A new framework to characterise biological planar structures. ISBI 2012: 1675-1678 - [c30]Jose Ignacio Agulleiro Baldo, Francisco Miguel Vázquez López, Ester M. Garzón, José-Jesús Fernández:
Dynamic Load Scheduling on CPU-GPU for Iterative Tomographic Reconstruction. ISPA 2012: 603-608 - [c29]Francisco Vázquez, Gloria Ortega López, José-Jesús Fernández, Inmaculada García, Ester M. Garzón:
Fast Sparse Matrix Matrix Product Based on ELLR-T and GPU Computing. ISPA 2012: 669-674 - [c28]Antonio Martínez-Sánchez, Inmaculada García, José-Jesús Fernández:
Procedure for Detection of Membranes in Three-Dimensional Subcellular Density Maps. PACBB 2012: 137-145 - [c27]Antonio Martínez-Sánchez, Inmaculada García, José-Jesús Fernández:
Segmentation of Planar Structures in Bioimaging. VISAPP (2) 2012: 42-47 - 2011
- [j29]Jose Ignacio Agulleiro Baldo, José-Jesús Fernández:
Fast tomographic reconstruction on multicore computers. Bioinform. 27(4): 582-583 (2011) - [j28]Francisco Vázquez, Ester M. Garzón, José-Jesús Fernández:
Matrix Implementation of Simultaneous Iterative Reconstruction Technique (SIRT) on GPUs. Comput. J. 54(11): 1861-1868 (2011) - [j27]Francisco Vázquez, José-Jesús Fernández, Ester M. Garzón:
A new approach for sparse matrix vector product on NVIDIA GPUs. Concurr. Comput. Pract. Exp. 23(8): 815-826 (2011) - [j26]Juana López Redondo, José-Jesús Fernández, Inmaculada García, Pilar Martínez Ortigosa:
Parallel algorithms for continuous multifacility competitive location problems. J. Glob. Optim. 50(4): 557-573 (2011) - [j25]Juana López Redondo, José-Jesús Fernández, Inmaculada García, Pilar Martínez Ortigosa:
Solving the facility location and design (1∣1)-centroid problem via parallel algorithms. J. Supercomput. 58(3): 420-428 (2011) - [c26]Jose Ignacio Agulleiro Baldo, Ester M. Garzón, Inmaculada García, José-Jesús Fernández:
Multi-core Desktop Processors Make Possible Real-Time Electron Tomography. PDP 2011: 127-132 - 2010
- [j24]Jose-Roman Bilbao-Castro, Carlos Oscar Sánchez Sorzano, Inmaculada García, José-Jesús Fernández:
XMSF: Structure-preserving noise reduction and pre-segmentation in microscope tomography. Bioinform. 26(21): 2786-2787 (2010) - [j23]Juana López Redondo, José-Jesús Fernández, Inmaculada García, Pilar Martínez Ortigosa:
Heuristics for the facility location and design (1|1)-centroid problem on the plane. Comput. Optim. Appl. 45(1): 111-141 (2010) - [j22]José-Jesús Fernández, José Antonio Martínez:
Three-dimensional feature-preserving noise reduction for real-time electron tomography. Digit. Signal Process. 20(4): 1162-1172 (2010) - [j21]Paula Cecilia Fritzsche, José-Jesús Fernández, Dolores Rexachs, Inmaculada García, Emilio Luque:
Analytical Performance Prediction for Iterative Reconstruction Techniques in Electron Tomography of Biological Structures. Int. J. High Perform. Comput. Appl. 24(4): 457-468 (2010) - [c25]Francisco Vázquez, Gloria Ortega López, José-Jesús Fernández, Ester M. Garzón:
Improving the Performance of the Sparse Matrix Vector Product with GPUs. CIT 2010: 1146-1151 - [c24]M. Laura da Silva, Javier Roca Piera, José-Jesús Fernández:
A Hybrid Parallel Approach for 3D Reconstruction of Cellular Specimens. DCAI 2010: 673-680 - [c23]José Antonio Martínez, Francisco Vázquez, Ester M. Garzón, José-Jesús Fernández:
Real-Time Electron Tomography Based on GPU Computing. Euro-Par Workshops 2010: 201-208 - [c22]Jose Ignacio Agulleiro Baldo, Ester M. Garzón, Inmaculada García Fernández, José-Jesús Fernández:
Ultra-fast Tomographic Reconstruction with a Highly Optimized Weighted Back-Projection Algorithm. PDP 2010: 281-285
2000 – 2009
- 2009
- [j20]Juana López Redondo, José-Jesús Fernández, Inmaculada García, Pilar Martínez Ortigosa:
A robust and efficient algorithm for planar competitive location problems. Ann. Oper. Res. 167(1): 87-105 (2009) - [j19]José-Jesús Fernández:
TOMOBFLOW: feature-preserving noise filtering for electron tomography. BMC Bioinform. 10 (2009) - [j18]Juana López Redondo, José-Jesús Fernández, Inmaculada García, Pilar Martínez Ortigosa:
Solving the Multiple Competitive Facilities Location and Design Problem on the Plane. Evol. Comput. 17(1): 21-53 (2009) - [c21]M. Laura da Silva, Javier Roca Piera, José-Jesús Fernández:
Evaluation of Master-Slave Approaches for 3D Reconstruction in Electron Tomography. IWANN (2) 2009: 227-231 - 2008
- [j17]José-Jesús Fernández, Dan Gordon, Rachel Gordon:
Efficient parallel implementation of iterative reconstruction algorithms for electron tomography. J. Parallel Distributed Comput. 68(5): 626-640 (2008) - [c20]Jose Ignacio Agulleiro Baldo, Ester M. Garzón, Inmaculada García, José-Jesús Fernández:
Fast Tomographic Reconstruction with Vectorized Backprojection. PDP 2008: 387-390 - [p2]José-Jesús Fernández, Sam Li, R. A. Crowther:
Image Restoration in Electron Cryotomography - Towards Cellular Ultrastructure at Molecular Level. Innovations in Hybrid Intelligent Systems 2008: 345-352 - [p1]José-Jesús Fernández, Sam Li, Vladan Lucic:
Structure-Preserving Noise Reduction in Biological Imaging. Innovations in Hybrid Intelligent Systems 2008: 385-392 - 2007
- [j16]Jose-Roman Bilbao-Castro, Inmaculada García, José-Jesús Fernández:
EGEETomo: a user-friendly, fault-tolerant and grid-enabled application for 3D reconstruction in electron tomography. Bioinform. 23(24): 3391-3393 (2007) - [j15]Siham Tabik, Ester M. Garzón, Inmaculada García, José-Jesús Fernández:
High performance noise reduction for biomedical multidimensional data. Digit. Signal Process. 17(4): 724-736 (2007) - [j14]José-Jesús Fernández, Inmaculada García, José María Carazo, Roberto Marabini:
Electron tomography of complex biological specimens on the Grid. Future Gener. Comput. Syst. 23(3): 435-446 (2007) - [j13]Pilar Martínez Ortigosa, Juana López Redondo, Inmaculada García, José-Jesús Fernández:
A population global optimization algorithm to solve the image alignment problem in electron crystallography. J. Glob. Optim. 37(4): 527-539 (2007) - [j12]Jose-Roman Bilbao-Castro, A. Merino, Inmaculada García, José María Carazo, José-Jesús Fernández:
Parameter optimization in 3D reconstruction on a large scale grid. Parallel Comput. 33(4-5): 250-263 (2007) - [c19]José-Jesús Fernández, Sam Li, Vladan Lucic:
Three-Dimensional Anisotropic Noise Reduction with Automated Parameter Tuning: Application to Electron Cryotomography. CAEPIA 2007: 60-69 - [c18]José Antonio Álvarez-Bermejo, Javier Roca Piera, José-Jesús Fernández:
A Load Balancing Framework in Multithreaded Tomographic Reconstruction. PARCO 2007: 165-172 - [c17]José Antonio Álvarez-Bermejo, Javier Roca Piera, José-Jesús Fernández:
Multithreaded Tomographic Reconstruction. PVM/MPI 2007: 81-88 - 2006
- [j11]José-Jesús Fernández, Carlos Oscar Sánchez Sorzano, Roberto Marabini, José María Carazo:
Image processing and 3-D reconstruction in electron microscopy. IEEE Signal Process. Mag. 23(3): 84-94 (2006) - [c16]Siham Tabik, Ester M. Garzón, Inmaculada García, José-Jesús Fernández:
Evaluation of Parallel Paradigms on Anisotropic Nonlinear Diffusion. Euro-Par 2006: 1159-1168 - [c15]Siham Tabik, Ester M. Garzón, Inmaculada García, José-Jesús Fernández:
Multiprocessing of Anisotropic Nonlinear Diffusion for Filtering 3D Images. PDP 2006: 21-27 - 2005
- [j10]José-Jesús Fernández, Sam Li:
Anisotropic nonlinear filtering of cellular structures in cryoelectron tomography. Comput. Sci. Eng. 7(5): 54-61 (2005) - [c14]Siham Tabik, Ester M. Garzón, Inmaculada García, José-Jesús Fernández:
Filtering 3D images in Structural Biology with Anisotropic Nonlinear Diffusion on SMP Clusters. PARCO 2005: 727-734 - [c13]Paula Cecilia Fritzsche, Ana Ripoll, Emilio Luque, José-Jesús Fernández, Inmaculada García:
A Performance Prediction for Iterative Reconstruction Techniques on Tomography. PDP 2005: 92-99 - 2004
- [j9]Jose-Roman Bilbao-Castro, Carlos Oscar Sánchez Sorzano, Inmaculada García, José-Jesús Fernández:
Phan3D: design of biological phantoms in 3D electron microscopy. Bioinform. 20(17): 3286-3288 (2004) - [j8]José-Jesús Fernández, José María Carazo, Inmaculada García:
Three-dimensional reconstruction of cellular structures by electron microscope tomography and parallel computing. J. Parallel Distributed Comput. 64(2): 285-300 (2004) - [j7]José-Jesús Fernández, Jose-Roman Bilbao-Castro, Roberto Marabini, José María Carazo, Inmaculada García:
Biological Structure Determination by EM is Well Suited to Grid Computing. New Gener. Comput. 22(2): 187-188 (2004) - [j6]José-Jesús Fernández, Jose-Roman Bilbao-Castro, Roberto Marabini, José María Carazo, Inmaculada García:
On the Suitability of Biological Structure Determination by Electron Microscopy to Grid Computing. New Gener. Comput. 23(1): 101-112 (2004) - [j5]Jose-Roman Bilbao-Castro, Roberto Marabini, José María Carazo, Inmaculada García, José-Jesús Fernández:
The Potential Of Grid Computing In Three-Dimensional Electron Microscopy. Parallel Process. Lett. 14(2): 151-162 (2004) - [j4]Roberto Marabini, Carlos Oscar Sánchez Sorzano, Samuel Matej, José-Jesús Fernández, José María Carazo, Gabor T. Herman:
3-D reconstruction of 2-D crystals in real space. IEEE Trans. Image Process. 13(4): 549-561 (2004) - [c12]Juana López Redondo, Pilar Martínez Ortigosa, Inmaculada García, José-Jesús Fernández:
Image Registration in Electron Microscopy. A Stochastic Optimization Approach. ICIAR (2) 2004: 141-149 - [c11]Jose-Roman Bilbao-Castro, José María Carazo, José-Jesús Fernández, Inmaculada García:
Parallelization and Comparison of 3D Iterative Reconstruction Algorithms. PDP 2004: 96-102 - [c10]Juana López Redondo, Pilar Martínez Ortigosa, Inmaculada García, José-Jesús Fernández:
A global optimization approach to image translational alignment in electron microscopy. SMC (5) 2004: 4485-4490 - [c9]Paula Cecilia Fritzsche, José-Jesús Fernández, Ana Ripoll, Inmaculada García, Emilio Luque:
A Performance Prediction Model for Tomographic Reconstruction in Structural Biology. VECPAR 2004: 90-103 - 2003
- [j3]José-Jesús Fernández, Inmaculada García, Ester M. Garzón:
Floating point arithmetic teaching for computational science. Future Gener. Comput. Syst. 19(8): 1321-1334 (2003) - [j2]José-Jesús Fernández, Inmaculada García, Ester M. Garzón:
Educational issues on number representation and arithmetic in computers: an undergraduate laboratory. IEEE Trans. Educ. 46(4): 477-485 (2003) - [c8]José-Jesús Fernández, Jose-Roman Bilbao-Castro, Roberto Marabini, José María Carazo, Inmaculada García:
Grid Computing in Structure Determination of Biological Specimens by Electron Microscope Tomography. European Across Grids Conference 2003: 171-181 - [c7]Jose-Roman Bilbao-Castro, José María Carazo, Inmaculada García, José-Jesús Fernández:
Parallel iterative reconstruction methods for structure determination of biological specimens by electron microscopy. ICIP (1) 2003: 565-568 - 2002
- [j1]Vicente González Ruiz, José-Jesús Fernández, Manuel F. López, Inmaculada García:
Progressive Image Transmission in Telemicroscopy: A Quantitative Approach for Electron Microscopy Images of Biological Specimens. Real Time Imaging 8(6): 519-544 (2002) - [c6]Roberto Marabini, Gabor T. Herman, Carlos Oscar Sánchez Sorzano, José María Carazo, José-Jesús Fernández, Samuel Matej:
3D reconstruction of 2D crystals from projections in real space. ISBI 2002: 689-692 - [c5]José-Jesús Fernández, Albert F. Lawrence, Javier Roca Piera, Inmaculada García, Mark H. Ellisman, José María Carazo:
High Performance Computing in Electron Microscope Tomography of Complex Biological Structures. VECPAR 2002: 166-180 - [c4]Ester M. Garzón, Inmaculada García, José-Jesús Fernández:
An Approach to Teaching Computer Arithmetic. VECPAR 2002: 269-286 - 2001
- [c3]Vicente González Ruiz, Manuel F. López, José-Jesús Fernández, Inmaculada García:
Techniques for Speeding up the SPIHT Progressive Image Compressor. VIIP 2001: 323-327 - [c2]Manuel F. López, Vicente González Ruiz, José-Jesús Fernández, Inmaculada García:
Progessive-fidelity Image Transmission for Telebrowsing: An Efficient Implementation. VIIP 2001: 334-339
1990 – 1999
- 1994
- [c1]Roberto Marabini, C. Vaquerizo, José-Jesús Fernández, José María Carazo, M. Ladjadj, O. Odesanya, J. Frank:
Prototype for a new distributed database of volume data obtained by 3D imaging. VBC 1994
Coauthor Index
Inmaculada García
aka: Inmaculada García Fernández
aka: Inmaculada García Fernández
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