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Harmen J. Bussemaker
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2000 – 2009
- 2008
- [j5]Barrett C. Foat, Ronald G. Tepper, Harmen J. Bussemaker:
TransfactomeDB: a resource for exploring the nucleotide sequence specificity and condition-specific regulatory activity of trans-acting factors. Nucleic Acids Res. 36(Database-Issue): 125-131 (2008) - [c4]Lucas D. Ward, Harmen J. Bussemaker:
Predicting functional transcription factor binding through alignment-free and affinity-based analysis of orthologous promoter sequences. ISMB 2008: 165-171 - 2007
- [j4]Harmen J. Bussemaker, Lucas D. Ward, André Boorsma:
Dissecting complex transcriptional responses using pathway-level scores based on prior information. BMC Bioinform. 8(S-6) (2007) - 2006
- [c3]Barrett C. Foat, Alexandre V. Morozov, Harmen J. Bussemaker:
Statistical mechanical modeling of genome-wide transcription factor occupancy data by MatrixREDUCE. ISMB (Supplement of Bioinformatics) 2006: 141-149 - 2005
- [j3]André Boorsma, Barrett C. Foat, Daniel J. Vis, Frans Klis, Harmen J. Bussemaker:
T-profiler: scoring the activity of predefined groups of genes using gene expression data. Nucleic Acids Res. 33(Web-Server-Issue): 592-595 (2005) - 2004
- [j2]Feng Gao, Barrett C. Foat, Harmen J. Bussemaker:
Defining transcriptional networks through integrative modeling of mRNA expression and transcription factor binding data. BMC Bioinform. 5: 31 (2004) - 2003
- [j1]Crispin Roven, Harmen J. Bussemaker:
REDUCE: an online tool for inferring cis-regulatory elements and transcriptional module activities from microarray data. Nucleic Acids Res. 31(13): 3487-3490 (2003) - 2001
- [c2]Harmen J. Bussemaker, Hao Li, Eric D. Siggia:
Regulatory element detection using correlation with expression (abstract only). RECOMB 2001: 86 - 2000
- [c1]Harmen J. Bussemaker, Hao Li, Eric D. Siggia:
Regulatory Element Detection Using a Probabilistic Segmentation Model. ISMB 2000: 67-74
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