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Journal Articles
- 2020
[j7]Dmitry V. Bagaev, Renske M. A. Vroomans, Jerome Samir
, Ulrik Stervbo, Cristina Rius, Garry Dolton, Alexander Greenshields-Watson, Meriem Attaf, Evgeny S. Egorov, Ivan V. Zvyagin, Nina Babel, David K. Cole, Andrew J. Godkin, Andrew K. Sewell, Can Kesmir, Dmitry M. Chudakov, Fabio Luciani, Mikhail Shugay:
VDJdb in 2019: database extension, new analysis infrastructure and a T-cell receptor motif compendium. Nucleic Acids Res. 48(Database-Issue): D1057-D1062 (2020)- 2018
- [j6]Simone Rizzetto, David N. P. Koppstein, Jerome Samir, Mandeep Singh, Joanne H. Reed, Curtis H. Cai, Andrew R. Lloyd, Auda A. Eltahla, Christopher C. Goodnow, Fabio Luciani:
B-cell receptor reconstruction from single-cell RNA-seq with VDJPuzzle. Bioinform. 34(16): 2846-2847 (2018) - [j5]Mikhail Shugay, Dmitriy V. Bagaev, Ivan V. Zvyagin, Renske M. A. Vroomans, Jeremy Chase Crawford, Garry Dolton, Ekaterina Komech, Anastasiya L. Sycheva, Anna E. Koneva, Evgeniy S. Egorov, Alexey V. Eliseev, Ewald van Dyk, Pradyot Dash, Meriem Attaf, Cristina Rius, Kristin Ladell, James E. McLaren, Katherine K. Matthews, E. Bridie Clemens, Daniel C. Douek, Fabio Luciani, Debbie van Baarle, Katherine Kedzierska, Can Kesmir, Paul G. Thomas, David A. Price, Andrew K. Sewell, Dmitry M. Chudakov:
VDJdb: a curated database of T-cell receptor sequences with known antigen specificity. Nucleic Acids Res. 46(Database-Issue): D419-D427 (2018) - 2014
- [j4]Armin Töpfer, Tobias Marschall, Rowena A. Bull, Fabio Luciani, Alexander Schönhuth, Niko Beerenwinkel:
Viral Quasispecies Assembly via Maximal Clique Enumeration. PLoS Comput. Biol. 10(3) (2014) - 2011
- [j3]Kerensa McElroy, Fabio Luciani, Janice Hui, Scott Rice, Torsten Thomas:
Bacteriophage evolution drives Pseudomonas aeruginosa PAO1 biofilm diversification. BMC Bioinform. 12(S-11): A2 (2011) - 2009
- [j2]Fabio Luciani, Samuel Alizon:
The Evolutionary Dynamics of a Rapidly Mutating Virus within and between Hosts: The Case of Hepatitis C Virus. PLoS Comput. Biol. 5(11) (2009) - 2008
- [j1]Chaka Tang, Josephine F. Reyes, Fabio Luciani, Andrew R. Francis, Mark M. Tanaka:
spolTools: online utilities for analyzing spoligotypes of the Mycobacterium tuberculosis complex. Bioinform. 24(20): 2414-2415 (2008)
Conference and Workshop Papers
- 2014
- [c1]Armin Töpfer, Tobias Marschall, Rowena A. Bull, Fabio Luciani, Alexander Schönhuth, Niko Beerenwinkel:
Viral Quasispecies Assembly via Maximal Clique Enumeration. RECOMB 2014: 309-310
Coauthor Index
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