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ORCIDVincent Zoete
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2020 – today
- 2023
[j29]Ute F. Röhrig
, Mathilde Goullieux, Marine Bugnon, Vincent Zoete:
Attracting Cavities 2.0: Improving the Flexibility and Robustness for Small-Molecule Docking. J. Chem. Inf. Model. 63(12): 3925-3940 (2023)- [j28]Marine Bugnon, Mathilde Goullieux, Ute F. Röhrig, Marta A. S. Perez, Antoine Daina, Olivier Michielin, Vincent Zoete:
SwissParam 2023: A Modern Web-Based Tool for Efficient Small Molecule Parametrization. J. Chem. Inf. Model. 63(21): 6469-6475 (2023) - [j27]Mathilde Goullieux, Vincent Zoete, Ute F. Röhrig:
Two-Step Covalent Docking with Attracting Cavities. J. Chem. Inf. Model. 63(24): 7847-7859 (2023) - 2022
- [j26]Alessandro Cuozzo, Antoine Daina, Marta A. S. Perez, Olivier Michielin, Vincent Zoete:
SwissBioisostere 2021: updated structural, bioactivity and physicochemical data delivered by a reshaped web interface. Nucleic Acids Res. 50(D1): 1382-1390 (2022) - 2021
- [j25]Vaishali P. Waman, Neeladri Sen, Mihaly Varadi, Antoine Daina, Shoshana J. Wodak, Vincent Zoete, Sameer Velankar, Christine A. Orengo:
The impact of structural bioinformatics tools and resources on SARS-CoV-2 research and therapeutic strategies. Briefings Bioinform. 22(2): 742-768 (2021)
2010 – 2019
- 2019
- [j24]Krystel El Hage, Vincent Zoete:
Strong Enrichment of Aromatic and Sulfur-Containing Residues in Ligand-Protein Binding Sites. J. Chem. Inf. Model. 59(11): 4921-4928 (2019) - [j23]Antoine Daina, Olivier Michielin, Vincent Zoete:
SwissTargetPrediction: updated data and new features for efficient prediction of protein targets of small molecules. Nucleic Acids Res. 47(Webserver-Issue): W357-W364 (2019) - 2017
- [j22]Prasad Chaskar, Vincent Zoete, Ute F. Röhrig:
On-the-Fly QM/MM Docking with Attracting Cavities. J. Chem. Inf. Model. 57(1): 73-84 (2017) - 2016
- [j21]Vincent Zoete, Thierry Schüpbach, Christophe Bovigny, Prasad Chaskar, Antoine Daina, Ute F. Röhrig, Olivier Michielin:
Attracting cavities for docking. Replacing the rough energy landscape of the protein by a smooth attracting landscape. J. Comput. Chem. 37(4): 437-447 (2016) - [j20]Vincent Zoete, Antoine Daina, Christophe Bovigny, Olivier Michielin:
SwissSimilarity: A Web Tool for Low to Ultra High Throughput Ligand-Based Virtual Screening. J. Chem. Inf. Model. 56(8): 1399-1404 (2016) - 2015
- [j19]David Gfeller, Vincent Zoete:
Protein homology reveals new targets for bioactive small molecules. Bioinform. 31(16): 2721-2727 (2015) - 2014
- [j18]Prasad Chaskar, Vincent Zoete, Ute F. Röhrig:
Toward On-The-Fly Quantum Mechanical/Molecular Mechanical (QM/MM) Docking: Development and Benchmark of a Scoring Function. J. Chem. Inf. Model. 54(11): 3137-3152 (2014) - [j17]Antoine Daina, Olivier Michielin, Vincent Zoete:
iLOGP: A Simple, Robust, and Efficient Description of n-Octanol/Water Partition Coefficient for Drug Design Using the GB/SA Approach. J. Chem. Inf. Model. 54(12): 3284-3301 (2014) - [j16]David Gfeller, Aurélien Grosdidier, Matthias Wirth, Antoine Daina, Olivier Michielin, Vincent Zoete:
SwissTargetPrediction: a web server for target prediction of bioactive small molecules. Nucleic Acids Res. 42(Webserver-Issue): 32-38 (2014) - [j15]Heinz Stockinger, Adrian M. Altenhoff, Konstantin Arnold, Amos Bairoch, Frederic B. Bastian, Sven Bergmann, Lydie Bougueleret, Philipp Bucher, Mauro Delorenzi, Lydie Lane, Philippe Le Mercier, Frédérique Lisacek, Olivier Michielin, Patricia M. Palagi, Jacques Rougemont, Torsten Schwede, Christian von Mering, Erik van Nimwegen, Daniel Walther, Ioannis Xenarios, Mihaela Zavolan, Evgeny M. Zdobnov, Vincent Zoete, Ron D. Appel:
Fifteen years SIB Swiss Institute of Bioinformatics: life science databases, tools and support. Nucleic Acids Res. 42(Webserver-Issue): 436-441 (2014) - 2013
- [j14]David Gfeller, Olivier Michielin, Vincent Zoete:
Shaping the interaction landscape of bioactive molecules. Bioinform. 29(23): 3073-3079 (2013) - [j13]Matthias Wirth, Andrea Volkamer, Vincent Zoete, Friedrich Rippmann, Olivier Michielin, Matthias Rarey, Wolfgang H. B. Sauer:
Protein pocket and ligand shape comparison and its application in virtual screening. J. Comput. Aided Mol. Des. 27(6): 511-524 (2013) - [j12]David Gfeller, Olivier Michielin, Vincent Zoete:
SwissSidechain: a molecular and structural database of non-natural sidechains. Nucleic Acids Res. 41(Database-Issue): 327-332 (2013) - [j11]Matthias Wirth, Vincent Zoete, Olivier Michielin, Wolfgang H. B. Sauer:
SwissBioisostere: a database of molecular replacements for ligand design. Nucleic Acids Res. 41(Database-Issue): 1137-1143 (2013) - 2012
- [j10]Maria U. Johansson, Vincent Zoete, Olivier Michielin, Nicolas Guex:
Defining and searching for structural motifs using DeepView/Swiss-PdbViewer. BMC Bioinform. 13: 173 (2012) - [j9]David Gfeller, Olivier Michielin, Vincent Zoete:
Expanding molecular modeling and design tools to non-natural sidechains. J. Comput. Chem. 33(18): 1525-1535 (2012) - 2011
- [j8]Aurélien Grosdidier, Vincent Zoete, Olivier Michielin:
Fast docking using the CHARMM force field with EADock DSS. J. Comput. Chem. 32(10): 2149-2159 (2011) - [j7]Vincent Zoete, Michel A. Cuendet, Aurélien Grosdidier, Olivier Michielin:
SwissParam: A fast force field generation tool for small organic molecules. J. Comput. Chem. 32(11): 2359-2368 (2011) - [j6]Aurélien Grosdidier, Vincent Zoete, Olivier Michielin:
SwissDock, a protein-small molecule docking web service based on EADock DSS. Nucleic Acids Res. 39(Web-Server-Issue): 270-277 (2011) - 2010
- [j5]Thierry Schüpbach, Vincent Zoete, Brice Tsakam-Sotché, Olivier Michielin:
Fourier transform convolution integrals applied to generalized Born molecular volume. J. Comput. Chem. 31(3): 649-659 (2010)
2000 – 2009
- 2009
- [j4]Aurélien Grosdidier, Vincent Zoete, Olivier Michielin:
Blind docking of 260 protein-ligand complexes with EADock 2.0. J. Comput. Chem. 30(13): 2021-2030 (2009) - [j3]Ute F. Röhrig, Aurélien Grosdidier, Vincent Zoete, Olivier Michielin:
Docking to heme proteins. J. Comput. Chem. 30(14): 2305-2315 (2009) - 2006
- [j2]Vincent Zoete, Markus Meuwly:
Importance of individual side chains for the stability of a protein fold: Computational alanine scanning of the insulin monomer. J. Comput. Chem. 27(15): 1843-1857 (2006) - 2003
- [j1]Vincent Zoete, Olivier Michielin, Martin Karplus:
Protein-ligand binding free energy estimation using molecular mechanics and continuum electrostatics. Application to HIV-1 protease inhibitors. J. Comput. Aided Mol. Des. 17(12): 861-880 (2003)
Coauthor Index
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