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ORCIDJournal of Integrative Bioinformatics, Volume 4
Volume 4, Number 1, 2007
- Erhard Rahm, Toralf Kirsten, Jörg Lange:
The GeWare data warehouse platform for the analysisof molecular-biological and clinical data. - Claudia Choi, Richard Münch, Boyke Bunk, Jens Barthelmes, Christian Ebeling, Dietmar Schomburg, Max Schobert, Dieter Jahn:
Combination of a data warehouse concept with web services for the establishment of the Pseudomonas systems biology database SYSTOMONAS. - Olga Krebs, Martin Golebiewski, Renate Kania, Saqib Mir, Jasmin Saric, Andreas Weidemann, Ulrike Wittig, Isabel Rojas:
SABIO-RK: A data warehouse for biochemical reactions and their kinetics. - Peter Walter, Sam Ansari, Volkhard Helms:
The ABC (Analysing Biomolecular Contacts)-database. - Gautam Chaurasia, Yasir Iqbal, Christian Hänig, Hanspeter Herzel, Erich E. Wanker, Matthias E. Futschik:
Flexible web-based integration of distributed large-scale human protein interaction maps. - Daniela Albrecht, Olaf Kniemeyer, Axel A. Brakhage, Matthias Berth, Reinhard Guthke:
Integration of Transcriptome and Proteome Data from Human-Pathogenic Fungi by Using a Data Warehouse. - Alexander Hinneburg, Björn Egert, Andrea Porzel:
Duplicate detection of 2D-NMR Spectra. - Martin Strauch, Jochen Supper, Christian Spieth, Dierk Wanke, Joachim Kilian, Klaus Harter, Andreas Zell:
A Two-Step Clustering for 3-D Gene Expression Data Reveals the Main Features of the Arabidopsis Stress Response. - Stefan Jablonski, Matthias Faerber, Bernhard Volz, Stefanie Genthner:
Deriving biological applications from domain specific process models. - Antje Gaida, Steffen Neumann:
MetHouse: Raw and Preprocessed Mass Spectrometry Data. - Hee-Jeong Jin, Jeong-Won Lee, Hwan-Gue Cho:
A Reliable and Distributed LIMS for Efficient Management of the Microarray Experiment Environment. - Konrad Stark, Johann Eder, Kurt Zatloukal:
Achieving k-anonymity in DataMarts used for gene expressions exploitation. - Christian Künne, Ivo Grosse, Inge Matthies, Uwe Scholz, Tatjana Sretenovic-Rajicic, Nils Stein, Andreas Stephanik, Burkhard Steuernagel, Stephan Weise
:
Using Data Warehouse Technology in Crop Plant Bioinformatics.
Volume 4, Number 2, 2007
- Amitava Karmaker, Kihoon Yoon, Mark Doderer, Russell Kruzelock, Stephen Kwek:
Identifying Transcription Regulatory Elements in the Human and Mouse Genomes Using Tissue-specific Gene Expression Profiles. - T. Shashi Rekha, Chanchal K. Mitra:
Frequency Analysis of the Splice Site Regions in Different Organisms.
Volume 4, Number 3, 2007
- Richard Banks, L. Jason Steggles:
A High-Level Petri Net Framework for Genetic Regulatory Networks. - Anastasia Yartseva, Raymond R. Devillers, Hanna Klaudel, François Képès:
From MIN model to ordinary differential equations. - Jan Taubert, Klaus Peter Sieren, Matthew Hindle, Berend Hoekman, Rainer Winnenburg, Stephan Philippi, Christopher J. Rawlings, Jacob Köhler:
The OXL format for the exchange of integrated datasets. - Sridhar Hariharaputran, Thoralf Töpel, Björn Brockschmidt, Ralf Hofestädt:
VINEdb: a data warehouse for integration and interactive exploration of life science data. - Ela Hunt, Joanna Jakubowska, Caroline Bösinger, Moira C. Norrie:
Defining Mapping Mashups with BioXMash. - Mounia Belmamoune, Fons J. Verbeek:
Developmental Anatomy Ontology of Zebrafish: an Integrative semantic framework. - Bashar Ibrahim, Peter Dittrich, Stephan Diekmann, Eberhard Schmitt:
Stochastic effects in a compartmental model for mitotic checkpoint regulation. - Jian Zhang, Zhiyuan Zhao, Jennifer Evershed, Guoying Li:
Monophyletic clustering and characterization of protein families. - Matthias Lange, Axel Himmelbach, Patrick Schweizer, Uwe Scholz:
Data Linkage Graph: computation, querying and knowledge discovery of life science database networks. - Intikhab Alam, Mike Cornell, Darren M. Soanes, Cornelia Hedeler, Han Min Wong, Magnus Rattray, Simon J. Hubbard, Nicholas J. Talbot, Stephen G. Oliver, Norman W. Paton:
A Methodology for Comparative Functional Genomics. - Reza Samavi, Mariano P. Consens, Shahan Khatchadourian, Thodoros Topaloglou:
Exploring PSI-MI XML Collections Using DescribeX. - Michael Telgkamp, Dirk Koschützki, Henning Schwöbbermeyer, Falk Schreiber:
Community-based Linking of Biological Network Resources: Databases, Formats and Tools. - Matthias Oesterheld, Hans-Werner Mewes, Volker Stümpflen:
Analysis of integrated biomolecular networks using a generic network analysis suite. - Erika L. Souche, B. Hellemans, J. K. J. Van Houdt, A. Canario, S. Klages, R. Reinhardt, F. A. M. Volckaert:
Mining for Single Nucleotide Polymorphisms in Expressed Sequence Tags. - Samantha Riccadonna, Giuseppe Jurman, Stefano Merler, Silvano Paoli, Alessandro Quattrone, Cesare Furlanello:
Supervised classification of combined copy number and gene expression data. - Jan Baumbach, Alexander Bunkowski, Sita Lange, Timm Oberwahrenbrock, Nils Kleinbölting, Sven Rahmann, Jörg Ingo Baumbach:
IMS2 - An integrated medical software system for early lung cancer detection using ion mobility spectrometry data of human breath. - Matthias E. Futschik, Gautam Chaurasia, Anna Tschaut, Jenny Russ, M. Madan Babu, Hanspeter Herzel:
Functional and Transcriptional Coherency of Modules in the Human Protein Interaction Network . - José A. Reyes, David R. Gilbert:
Prediction of protein-protein interactions using one-class classification methods and integrating diverse biological data. - Sabah Khalid, Mohsin Khan, Alistair Symonds, Karl Fraser, Ping Wang, Xiaohui Liu, Suling Li:
CIDA: An integrated software for the design, characterisation and global comparison of microarrays. - Anaïs Mottaz, Yum Lina Yip, Patrick Ruch, Anne-Lise Veuthey:
Mapping protein information to disease terminologies. - Allyson L. Lister, Matthew R. Pocock, Anil Wipat:
Integration of constraints documented in SBML, SBO, and the SBML Manual facilitates validation of biological models. - Joel Arrais, Bruno Santos, João Fernandes, Laura Carreto, Manuel A. S. Santos, José Luís Oliveira:
GeneBrowser: an approach for integration and functional classification of genomics data. - Vaida Jakoniene, Patrick Lambrix:
A Tool for Evaluating Strategies for Grouping of Biological Data. - Bernard de Bono, Imre Vastrik, Peter D'Eustachio, Esther Schmidt, Gopal Gopinath, David Croft, Marc Gillespie, Bijay Jassal, Suzanna Lewis, Lisa Matthews, Guanming Wu, Ewan Birney, Lincoln Stein:
Reactome: An integrated expert model of human molecular processes and access toolkit.
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