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ORCIDInternational Journal of Bioinformatics Research and Applications, Volume 10
Volume 10, Number 1, 2014
- Cong D. Dang, Kaiyu Dai, Guanghui Lan:
A linearly convergent first-order algorithm for total variation minimisation in image processing. 4-26 - Joy D. Guingab-Cagmat, Emilio B. Cagmat, Firas H. Kobeissy
, John Anagli:
Uses and challenges of bioinformatic tools in mass spectrometric-based proteomic brain perturbation studies. 27-42 - Sohan Seth, José C. Príncipe:
Learning dependence from samples. 43-58 - Elisa Pappalardo, Beyza Ahlatçioglu Ozkok, Panos M. Pardalos:
Space pruning monotonic search for the non-unique probe selection problem. 59-74 - S. Ray, W. O'Dell, Angelos Barmpoutis:
Perpendicular fibre tracking for neural fibre bundle analysis using diffusion MRI. 75-92 - Angeliki Skoura, Tatyana Nuzhnaya, Vasileios Megalooikonomou:
Integrating edge detection and fuzzy connectedness for automated segmentation of anatomical branching structures. 93-109 - Yuyuan Ouyang, Yunmei Chen, Ying Wu:
Vectorial total variation regularisation of orientation distribution functions in diffusion weighted MRI. 110-127
Volume 10, Number 2, 2014
- Kuldeep Yadav, Avi Srivastava, Ankush Mittal, M. A. Ansari:
Texture-based medical image retrieval in compressed domain using compressive sensing. 129-144 - Igor Yu. Popov, Anastasiya V. Vorobyova, Irina V. Blinova:
DNA-algorithm for timetable problem. 145-156 - B. Mukunthan, N. Nagaveni:
Identification of unique repeated patterns, location of mutation in DNA finger printing using artificial intelligence technique. 157-176 - Terrance Quinn, Zachariah Sinkala:
A direct method for computing extreme value (Gumbel) parameters for gapped biological sequence alignments. 177-189 - S. Ganesan, T. Aruldoss Albert Victoire, G. Vijayalakshmy:
Real-time estimation and detection of non-linearity in bio-signals using wireless brain-computer interface. 190-205 - Soumya Chigurupati, Arnima Bhasin, Krishna Kishore Inampudi, Swapna Asuthkar, Bhanupriya Madarampalli, Ramana Kumar Kammili, Kiran Kumar Velpula:
Functional and structural analysis of mice TRPC6 with human analogue through homology modelling. 206-216 - Dominic E. Nathan, Robert W. Prost, Stephen J. Guastello, Dean C. Jeutter:
Understanding the importance of natural neuromotor strategy in upper extremity neuroprosthetic control. 217-234
Volume 10, Number 3, 2014
- Ganesh Chandra Sahoo, Mukta Rani, Md. Yousuf Ansari, Chanda Jha, Sindhuprava Rana, Manas Ranjan Dikhit, Kanhu Charan Moharana, Rakesh Kumar, Pradeep Das:
Structure, evolution and virtual screening of NDM-1 strain from Kolkata. 235-263 - Abhik Seal, Arun Gupta, M. Mahalaxmi, Riju Aykkal, Tiratha Raj Singh, Vadivel Arunachalam:
Tools, resources and databases for SNPs and indels in sequences: a review. 264-296 - Moli Huang, Songsak Wattanachaisaereekul, Yu-Jun Han, Wanwipa Vongsangnak:
In silico analysis of plant and animal transposable elements. 297-306 - Monther Aldwairi, Bashar Al-Hajasad, Yaser M. Khamayseh:
A classifier system for predicting RNA secondary structure. 307-320 - Khalid Mohammad Jaber, Rosni Abdullah, Nur'Aini Abdul Rashid:
Fast decision tree-based method to index large DNA-protein sequence databases using hybrid distributed-shared memory programming model. 321-340
Volume 10, Numbers 4/5, 2014
- Junjie Li, Sanjay Ranka, Sartaj Sahni:
Pairwise sequence alignment for very long sequences on GPUs. 345-368 - Shibdas Bandyopadhyay, Sartaj Sahni, Sanguthevar Rajasekaran:
PMS6: a fast algorithm for motif discovery. 369-383 - John L. Spouge, Leonardo Mariño-Ramírez, Sergey L. Sheetlin:
Searching for repeats, as an example of using the generalised Ruzzo-Tompa algorithm to find optimal subsequences with gaps. 384-408 - Juan Carlos Francisco, Frederick M. Cohan, Danny Krizanc:
Accuracy and efficiency of algorithms for the demarcation of bacterial ecotypes from DNA sequence data. 409-425 - Margareta Ackerman, Daniel G. Brown, David Loker:
Effects of rooting via out-groups on in-group topology in phylogeny. 426-446 - Andrew Thrasher, Zachary Musgrave, Brian Kachmarck, Douglas Thain, Scott J. Emrich:
Scaling up genome annotation using MAKER and work queue. 447-460 - Wei Zhang, Erliang Zeng, Dan Liu, Stuart E. Jones, Scott J. Emrich:
Mapping genomic features to functional traits through microbial whole genome sequences. 461-478 - Cuncong Zhong, Justen Andrews, Shaojie Zhang:
Discovering non-coding RNA elements in Drosophila 3' untranslated regions. 479-497 - Yuan Li, Cuncong Zhong, Shaojie Zhang:
Finding consensus stable local optimal structures for aligned RNA sequences and its application to discovering riboswitch elements. 498-518 - Faraz Hussain, Sumit Kumar Jha, Susmit Jha, Christopher James Langmead:
Parameter discovery in stochastic biological models using simulated annealing and statistical model checking. 519-539 - Arup Kumar Ghosh, Faraz Hussain, Susmit Jha, Christopher James Langmead, Sumit Kumar Jha:
Discovering rare behaviours in stochastic differential equations using decision procedures: applications to a minimal cell cycle model. 540-558
Volume 10, Number 6, 2014
- Dolly Sharma, Sanguthevar Rajasekaran, Sudipta Pathak:
An experimental comparison of PMSprune and other algorithms for motif search. 559-573 - Kin-On Cheng, Ngai-Fong Law, Yui-Lam Chan, Wan-Chi Siu:
A joint framework for missing values estimation and biclusters detection in gene expression data. 574-586 - Jaroslav Kubrycht, Jana Novotná:
Sequence-based prediction of linear autoepitopes involved in pathogenesis of IPAH and the corresponding organism sources of molecular mimicry. 587-612 - R. Devi Priya, S. Kuppuswami:
Drawing inferences from clinical studies with missing values using genetic algorithm. 613-627 - Shreya Mathur, Sunil Mathur:
Developing a novel test to detect cancer genes from microarray data. 628-646 - Claus Desler, Sine Zambach, Prashanth Suravajhala, Lene Juel Rasmussen:
Introducing the hypothome: a way to integrate predicted proteins in interactomes. 647-652
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