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ORCIDBICoB 2011: New Orleans, Louisiana, USA
- Hisham Al-Mubaid:
Proceedings of the ISCA 3rd International Conference on Bioinformatics and Computational Biology, BICoB-2011, March 23-25, 2011, Holiday Inn Downtown-Superdome, New Orleans, Louisiana, USA. ISCA 2011, ISBN 978-1-880843-81-9
Gene and Protein
- Colin Kern, Li Liao, K. Vijay-Shanker:
Improving Transmembrane Protein Prediction by Increasing the Utilization of Local Information. BICoB 2011: 1-6 - Nashat Mansour, Iman Ghalayini, Sandra Rizk, Mirvat El-Sibai:
Evolutionary Algorithm for Predicting All-Atom Protein Structure. BICoB 2011: 7-12 - Jing Tian, Guiling Sun, Qin Ding, Jinling Huang, Shravanth Oruganti, Boya Xie:
AlienG: An Effective Computational Tool for Phylogenomic Identification of Horizontally Transferred Genes. BICoB 2011: 13-18
Microarray Research and Applications
- Majid I. Alsagabi, Ahmed H. Tewfik:
A Statistical Model for Microarrays and Optimal Detection Techniques. BICoB 2011: 19-23 - Masakazu Umezawa, Miho Sera, Ken Takeda:
A Novel Analysis Tool to Interpret Microarray Results Using Multiple Gene Annotation. BICoB 2011: 24-29 - Juexin Wang, Fan Zhang, Yan Wang, Yuan Fu, Dong Xu, Yanchun Liang:
Identification of Salt Tolerance Genes in Rice from Microarray Data using SVM-RFE. BICoB 2011: 30-35
Disease and Drug
- Waree Rinsurongkawong, Marc Garbey, Ralph G. Zinner:
Drug Combination, The Design and Problem Landscape. BICoB 2011: 36-41 - Yueh-Jaw Lin, Chu-Jing Soong:
Molecular Dynamics-Based Computational Study on Non-Traditional Particle Models for Improved Drug Delivery Rates. BICoB 2011: 43-48 - Anurag Nagar, Hisham Al-Mubaid:
Similarity and Prioritization of Disease Proteins using Path Length Measure. BICoB 2011: 49-54 - David Thanoon, Marc Garbey, Barbara Bass:
Computational Modeling of Breast Conserving Surgery: a Cosmetic Outcome Indicator from Virtual Surgery. BICoB 2011: 55-60
Biological and Regulatory Networks
- Tejaswini Narayanan, Shankar Subramaniam:
Community Detection in Biological Networks using a Variational Bayes Approach. BICoB 2011: 61-66 - Johannes Georg Klotz, Steffen Schober, Martin Bossert:
On the Predecessor Problem in Boolean Network Models of Regulatory Networks. BICoB 2011: 67-73 - Vijender Chaitankar, Preetam Ghosh, Mohamed O. Elasri, Edward J. Perkins:
A Scalable Information Theory Based Gene Regulatory Network Inference Method from Time Series and Knock-Out Data. BICoB 2011: 74-79 - Henry Chi-Ming Leung, Shuen-Yi Leung, Carlos Lu Xiang, Siu-Ming Yiu, Francis Yuk-Lun Chin:
DMPFinder - Finding Differentiating Pathways with Gaps from Two Groups of Metabolic Networks. BICoB 2011: 80-85
Machine Learning in Bioinformatics
- Prabha Garg, Anju Sharma, Rajender Kumar, Pawan Gupta, Nilanjan Roy:
MSubCellProt: Predicting Protein Multiple Subcellular Localization using Machine Learning. BICoB 2011: 86-91 - Zeehasham Rasheed, Huzefa Rangwala:
TAC-ELM: Metagenomic Taxonomic Classification with Extreme Learning Machines. BICoB 2011: 92-97 - Raj Singh, Vikas Yadav:
An Efficient Approach for Discovering Interesting Patterns from Biomedical Data. BICoB 2011: 98-103 - Hisham Al-Mubaid, Sandeep Gungu:
A Learning Approach for Word Sense Disambiguation in the Biomedical Domain. BICoB 2011: 104-109
Petri Nets Modeling
- Melissa Pegues, Nicholas Drozda, Seung-Yun Kim, Robert Warburton:
Krebs Cycle and Glycolysis Petri Net Models and Simulations for Biochemical Education. BICoB 2011: 110-115 - Nicholas Drozda, Melissa Pegues, Seung-Yun Kim, Robert Warburton:
Modeling and Simulation of Steroid Hormone Biosynthesis and Disease State using Petri Nets. BICoB 2011: 116-121 - Melissa Pegues, Nicholas Drozda, Seung-Yun Kim, Robert Warburton:
Modeling and Simulation of Biochemical Processes using Petri Nets: Steroid Hormone Biosynthesis and Action of Aldosterone. BICoB 2011: 122-127
Bioinformatics Applications
- Neal Lewis, Daniel Gruhl, Hui Yang:
Extracting Family History Diagnosis from Clinical Texts. BICoB 2011: 128-133 - Jorge Júlvez, Marta Z. Kwiatkowska, Gethin Norman, David Parker:
A Systematic Approach to Evaluate Sustained Stochastic Oscillations. BICoB 2011: 134-139 - Guillaume Tran-Son-Tay, Marc Garbey, Mark G. Davies:
Hemodynamic Uncertainties of Wall Shear Stress in Major Arteries. BICoB 2011: 140-145 - Corey M. Thibeault, Roger V. Hoang, Frederick C. Harris Jr.:
A Novel Multi-GPU Neural Simulator. BICoB 2011: 146-151
Data Mining Applications in Bioinformatics
- Fahad Saeed, Trairak Pisitkun, Mark A. Knepper, Jason D. Hoffert:
Mining Temporal Patterns from iTRAQ Mass Spectrometry(LC-MS/MS) Data. BICoB 2011: 152-159 - Can Akkoç, Tom Johnsten, Ryan G. Benton:
Multi-layered Vector Spaces for Classifying and Analyzing Biological Sequences. BICoB 2011: 160-166 - Hongbao Cao, Yu-Ping Wang:
M-Fish Image Analysis with Improved Adaptive Fuzzy C-Means Clustering Based Segmentation and Sparse Representation Classification. BICoB 2011: 167-171 - Hongbao Cao, Yu-Ping Wang:
Integrated Analysis of Gene Expression and Copy Number Data using Sparse Representation Based Clustering Model. BICoB 2011: 172-177
DNA and RNA
- Pragyan P. Mohanty, Spyros Tragoudas:
A Scalable Method for Identifying DNA Substrings Using Functions. BICoB 2011: 178-183 - Sheng Li, Huzefa Rangwala:
An Information Theoretic Approach for the Analysis of RNA and DNA Binding Sites. BICoB 2011: 184-189 - Nuttachat Wisittipanit, Huzefa Rangwala, Masoumeh Sikaroodi, Ali Keshavarzian, Ece A. Mutlu, Patrick Gillevet:
Profiling Microbial Communities using SSU rRNA Sequence and LH-PCR Data. BICoB 2011: 190-195 - Joseph R. Coco, Erik K. Flemington, Christopher M. Taylor:
PARSES: A Pipeline for Analysis of RNA-Seq Exogenous Sequences. BICoB 2011: 196-200 - Marzieh Khodaee, Vahid Hashemi, Mohammad Aminisharifabad:
A Simple Algorithm for Solving the All-Pairs Minimum Value Cut Problem Using DNA Computing. BICoB 2011: 201-204
Data Analysis and Modeling - I
- Ashwin Manjunatha, Paul Anderson, Ajith Ranabahu, Amit P. Sheth:
Identifying and Implementing the Underlying Operators for Nuclear Magnetic Resonance based Metabolomics Data Analysis. BICoB 2011: 205-210 - Juliana C. Correa, Gabriel P. Silva:
Parallel BLAST Analysis and Performance Evaluation. BICoB 2011: 211-218 - James D. Jackson, Philip J. Hatcher:
Efficient Parallel Execution of Sequence Similarity Analysis Via Dynamic Load Balancing. BICoB 2011: 219-224 - Stephen Winters-Hilt:
Single Nucleotide Polymorphism Detection via Cheminformatics Analysis of Nanopore-Blockades Engineered for Event Transduction. BICoB 2011: 225-232 - Aysegul Ozkan, Meera Sitharam:
EASAL (Efficient Atlasing, Analysis and Search of Molecular Assembly Landscapes). BICoB 2011: 233-238 - Kris Sankaran, Siva Sankaran:
A Hidden Markov Model Approach to Identifying Novel Functional Modules. BICoB 2011: 239-244 - Haijun Gong, Qinsi Wang, Paolo Zuliani, James R. Faeder, Michael Lotze:
Symbolic Model Checking of Signaling Pathways in Pancreatic Cancer. BICoB 2011: 245-
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