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Publication search results
found 54 matches
- 2017
- Shun Asami, Daisuke Kiga, Akihiko Konagaya:
Constraint-based perturbation analysis with cluster Newton method: a case study of personalized parameter estimations with irinotecan whole-body physiologically based pharmacokinetic model. BMC Syst. Biol. 11(S-7): 151-162 (2017) - Pavithra K. Balasubramanian, Anand Balupuri, Hee-Young Kang, Seung Joo Cho:
Receptor-guided 3D-QSAR studies, molecular dynamics simulation and free energy calculations of Btk kinase inhibitors. BMC Syst. Biol. 11(S-2): 6:1-6:11 (2017) - Weiqi Chen, Jing Liu, Shan He:
Prior knowledge guided active modules identification: an integrated multi-objective approach. BMC Syst. Biol. 11(S-2): 8:1-8:12 (2017) - Minghan Chen, Fei Li, Shuo Wang, Young Cao:
Stochastic modeling and simulation of reaction-diffusion system with Hill function dynamics. BMC Syst. Biol. 11(3): 21:1-21:11 (2017) - Zhanzhan Cheng, Kai Huang, Yang Wang, Hui Liu, Jihong Guan, Shuigeng Zhou:
Selecting high-quality negative samples for effectively predicting protein-RNA interactions. BMC Syst. Biol. 11(S-2): 9:1-9:11 (2017) - Daesik Choi, Byungkyu Park, Hanju Chae, Wook Lee, Kyungsook Han:
Predicting protein-binding regions in RNA using nucleotide profiles and compositions. BMC Syst. Biol. 11(S-2): 16:1-16:12 (2017) - Changhe Fu, Su Deng, Guangxu Jin, Xinxin Wang, Zu-Guo Yu:
Bayesian network model for identification of pathways by integrating protein interaction with genetic interaction data. BMC Syst. Biol. 11(S-4): 35-42 (2017) - Mingxin Gan, Wenran Li, Wanwen Zeng, Xiaojian Wang, Rui Jiang:
Mimvec: a deep learning approach for analyzing the human phenome. BMC Syst. Biol. 11(S-4): 3-16 (2017) - Jie Gao, Kang Wang, Tao Ding, Shanshan Zhu:
Forecasting influenza A pandemic outbreak using protein dynamical network biomarkers. BMC Syst. Biol. 11(S-4): 113-119 (2017) - Yuzhen Guo, Fengying Tao, Zikai Wu, Yong Wang:
Hybrid method to solve HP model on 3D lattice and to probe protein stability upon amino acid mutations. BMC Syst. Biol. 11(S-4): 99-111 (2017) - Jing He, Zhou Zhou, Michael Reed, Andrea Califano:
Accelerated parallel algorithm for gene network reverse engineering. BMC Syst. Biol. 11(S-4): 85-97 (2017) - Kai-Yao Huang, Tzu-Hao Chang, Jhih-Hua Jhong, Yu-Hsiang Chi, Wen-Chi Li, Chien-Lung Chan, K. Robert Lai, Tzong-Yi Lee:
Identification of natural antimicrobial peptides from bacteria through metagenomic and metatranscriptomic analysis of high-throughput transcriptome data of Taiwanese oolong teas. BMC Syst. Biol. 11(S-7): 29-44 (2017) - Hyundoo Jeong, Byung-Jun Yoon:
SEQUOIA: significance enhanced network querying through context-sensitive random walk and minimization of network conductance. BMC Syst. Biol. 11(3): 20:1-20:11 (2017) - Zhiwei Ji, Bing Wang, Ke Yan, Ligang Dong, Guanmin Meng, Lei Shi:
A linear programming computational framework integrates phosphor-proteomics and prior knowledge to predict drug efficacy. BMC Syst. Biol. 11(S-7): 127:1-127:13 (2017) - Hao Jiang, Wai-Ki Ching, Wai-Shun Cheung, Wenpin Hou, Hong Yin:
Hadamard Kernel SVM with applications for breast cancer outcome predictions. BMC Syst. Biol. 11(S-7): 163-174 (2017) - Hao Jiang, Wai-Ki Ching, Yushan Qiu, Xiaoqing Cheng:
Optimal projection method determination by Logdet Divergence and perturbed von-Neumann Divergence. BMC Syst. Biol. 11(6): 45-61 (2017) - Hui-Ju Kao, Shun-Long Weng, Kai-Yao Huang, Fergie Joanda Kaunang, Justin Bo-Kai Hsu, Chien-Hsun Huang, Tzong-Yi Lee:
MDD-carb: a combinatorial model for the identification of protein carbonylation sites with substrate motifs. BMC Syst. Biol. 11(S-7): 127-140 (2017) - Qi Li, Yongyi Gong:
A geometric method for contour extraction of Drosophila embryos. BMC Syst. Biol. 11(6): 35-44 (2017) - Biao Li, Amanda Sierra, Juan Jose Deudero, Fatih Semerci, Andrew Laitman, Marek Kimmel, Mirjana Maletic-Savatic:
Multitype Bellman-Harris branching model provides biological predictors of early stages of adult hippocampal neurogenesis. BMC Syst. Biol. 11(S-5): 90:1-90:16 (2017) - Huipeng Li, Lakshmi Venkatraman, Balakrishnan Chakrapani Narmada, Jacob K. White, Hanry Yu, Lisa Tucker-Kellogg:
Computational analysis reveals the coupling between bistability and the sign of a feedback loop in a TGF-β1 activation model. BMC Syst. Biol. 11(S-7): 91-99 (2017) - Ru-Dong Li, Yin Wang, Hui Cheng, Gang Liu, Tao Cheng, Yunlong Liu, Lei Liu:
System modeling reveals the molecular mechanisms of HSC cell cycle alteration mediated by Maff and Egr3 under leukemia. BMC Syst. Biol. 11(S-5): 91:1-91:12 (2017) - Jin Li, Yang Wang, Xi Rao, Yue Wang, Weixing Feng, Hong Liang, Yunlong Liu:
Roles of alternative splicing in modulating transcriptional regulation. BMC Syst. Biol. 11(S-5): 89:1-89:12 (2017) - Qiao Liu, Mingxin Gan, Rui Jiang:
A sequence-based method to predict the impact of regulatory variants using random forest. BMC Syst. Biol. 11(S-2): 7:1-7:9 (2017) - Fei Liu, Deshun Sun, Ryutaro Murakami, Hiroshi Matsuno:
Modeling and analysis of the Delta-Notch dependent boundary formation in the Drosophila large intestine. BMC Syst. Biol. 11(S-4): 43-60 (2017) - Jin-Xing Liu, Dong-Qin Wang, Chun-Hou Zheng, Ying-Lian Gao, Sha-Sha Wu, Junliang Shang:
Identifying drug-pathway association pairs based on L2, 1-integrative penalized matrix decomposition. BMC Syst. Biol. 11(6): 63-73 (2017) - Qingping Liu, Jiahao Wang, Yan Zhu, Yongqun He:
Ontology-based systematic representation and analysis of traditional Chinese drugs against rheumatism. BMC Syst. Biol. 11(S-7): 113-125 (2017) - Xiaoxia Liu, Zhihao Yang, Hongfei Lin, Michael Simmons, Zhiyong Lu:
DIGNiFI: Discovering causative genes for orphan diseases using protein-protein interaction networks. BMC Syst. Biol. 11(3): 23:1-23:11 (2017) - Lichun Ma, Jie Zheng:
A polynomial based model for cell fate prediction in human diseases. BMC Syst. Biol. 11(S-7): 15-27 (2017) - Maulida Mazaya, Hung-Cuong Trinh, Yung-Keun Kwon:
Construction and analysis of gene-gene dynamics influence networks based on a Boolean model. BMC Syst. Biol. 11(S-7): 101-111 (2017) - Ji Hwan Moon, Sangsoo Lim, Kyuri Jo, Sangseon Lee, Seokjun Seo, Sun Kim:
PINTnet: construction of condition-specific pathway interaction network by computing shortest paths on weighted PPI. BMC Syst. Biol. 11(S-2): 15:1-15:13 (2017)
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