- Ling Yue
, Sixue Xing, Jintai Chen, Tianfan Fu:
TrialEnroll: Predicting Clinical Trial Enrollment Success with Deep & Cross Network and Large Language Models. BCB 2024: 43:1-43:9 - Chenyu Zhang, Qingli Hu, Honglin Wang, Seung-Hyun Hong, Riqiang Yan, Dong-Guk Shin:
Leveraging Mutual Information for Functional Annotation Analysis of Microglia in Alzheimer's Disease. BCB 2024: 14:1-14:10 - Zhongteng Zhang, Qing Peng, Liu Zhang, Zihao Zhang, Weihong Huang:
STAPFormer: A New 3D Human Pose Estimation Framework in Sports and Health. BCB 2024: 20:1-20:10 - Huiling Zhang, Jingjing Zhang, Ganzhang Zheng, Xiaochuan Chen, Zaoqing Liang, Haiyan Wang, Yanjie Wei:
Missense Mutation Effect Prediction using Categorical Boosting Optimized with Sparrow Search Algorithm. BCB 2024: 98:1 - Che Zhao, Shunfang Wang:
AttCON-Homo: Attention and PLMs-enhanced Neural Networks for Predicting Inter-chain Contacts and Distances in Homo-oligomeric Protein Complexes. BCB 2024: 50:1-50:6 - Haochen Zhao, Xiaoyu Zhang, Qichang Zhao, Guihua Duan:
ISGDRP: a multi-modal learning method for drug response prediction. BCB 2024: 21:1-21:8 - Jianqiang Zheng, Ziqi Xu, Junwen Huang, Xiaochuan Chen, Yuetong Li, Yanjie Wei, Huiling Zhang:
CCVAN: A Conditional Molecular Generation Model based on conditional VAE and Wasserstein GAN. BCB 2024: 87:1 - Ruikang Zhou, Haochen Zhao, Jian Zhong, Guihua Duan:
PepGPL: A Multi-Task Framework for Identifying Peptide-Protein Interactions and Corresponding Binding Residues. BCB 2024: 22:1-22:9 - Proceedings of the 15th ACM International Conference on Bioinformatics, Computational Biology and Health Informatics, BCB 2024, Shenzhen, China, November 22-25, 2024. ACM 2024, ISBN 979-8-4007-1302-6 [contents]
- 2023
- Zifeng Wang, Cao Xiao, Jimeng Sun:
SPOT: Sequential Predictive Modeling of Clinical Trial Outcome with Meta-Learning. BCB 2023: 53:1-53:11 - Usman L. Abbas, Jin Chen, Qing Shao:
Assessing Fairness of AlphaFold2 Prediction of Protein 3D Structures. BCB 2023: 98:1-98:10 - Renad Al-Ghazawi, Theodore J. Perkins, Xiaojian Shao:
A Model of Cell Population Dynamics in Skeletal Muscle Regeneration. BCB 2023: 57:1 - Md Alamin, Kevin J. Liu:
Phylogenetic Placement of Aligned Genomes and Metagenomes with Non-tree-like Evolutionary Histories. BCB 2023: 45:1-45:10 - Maytha Alshammari, Jing He, Willy Wriggers:
AlphaFold2 Model Refinement Using Structure Decoys. BCB 2023: 108:1-108:7 - Omer Anjum, Luyao Chen, Ryan Denlinger, Ejaz Anam, Dongsheng Yuan, Connie Wooldridge, Martin J. Citardi, Jiajie Zhang, Hua Xu, Xiaoqian Jiang:
FinFax: Fast Interpretation of Fax with NLP. BCB 2023: 73:1-73:2 - Noam Auslander, Abdurrahman Elbasir:
Identification of generalizable gene expression biomarkers associated with drug Respose in cell Lines and patients. BCB 2023: 76:1 - Ashley Nicole Babjac, Zhixiu Lu, Scott J. Emrich:
CodonBERT: Using BERT for Sentiment Analysis to Better Predict Genes with Low Expression. BCB 2023: 29:1-29:6 - Advait Balaji, Yunxi Liu, Michael G. Nute, Bingbing Hu, Anthony D. Kappell, Danielle S. Lesassier, Gene D. Godbold, Krista Ternus, Todd J. Treangen:
SeqScreen-Nano: a computational platform for streaming, in-field characterization of microbial pathogens. BCB 2023: 17:1-17:10 - J. White Bear, Grégoire De Bisschop, Eric Lécuyer, Jérôme Waldispühl:
Localized, Non-parametric Detection of RNA Structural Modification using Nanopore Basecalling. BCB 2023: 38:1-38:8 - Edward L. Braun:
Phylogenomics using Compression Distances: Incorporating Rate Heterogeneity and Amino Acid Properties. BCB 2023: 46:1-46:6 - Aysegul Bumin, Megan Shah, Kejun Huang, Tamer Kahveci:
Vulture: VULnerabilities in impuTing drUg REsistance. BCB 2023: 56:1-56:6 - Jordan Li Cahoon, Luis Antonio Garcia:
Continuous Stress Monitoring for Healthcare Workers: Evaluating Generalizability Across Real-World Datasets. BCB 2023: 31:1-31:5 - Xin Cao, Mikhail Ignatov, George Jones, Sara N. Pollock, Evangelos A. Coutsias, Dima Kozakov:
Numerically stable algorithm for Inverse Kinematics of 6R problem and its applications to macrocycles. BCB 2023: 84:1 - Salvador Eugenio C. Caoili:
Capturing Solvent-System Effects in B-Cell Epitope Prediction with the HAPTIC3/HEPTAD2 User Toolkit (HUT2). BCB 2023: 62:1 - Sakshar Chakravarty, Glennis Logsdon, Stefano Lonardi:
RAmbler: de novo genome assembly of complex repetitive regions. BCB 2023: 13:1 - Yang Chen, Elissa P. Lei:
Deciphering the contribution of 3D interactions between cis-regulatory elements and promoters to regulate gene expression using graph neural networks. BCB 2023: 67:1 - Lei Chen, Junhao Su, Tak Wah Lam, Ruibang Luo:
Exploring Pair-Aware Triangular Attention for Biomedical Relation Extraction. BCB 2023: 35:1-35:5 - Lei Chen, Junhao Su, Zhenxian Zheng, Tak Wah Lam, Ruibang Luo:
Large-scale Dataset and Effective Model for Variant-Disease Associations Extraction. BCB 2023: 37:1-37:6 - Ahyoung Choi, No Soo Kim, Aeyung Kim, Haeseung Lee, Hyunjin Shin:
Identification of therapeutic targets for muscle atrophy via analyzing transcriptomic profiles with systems biology approaches. BCB 2023: 77:1 - Sanjeevani Choudhery, Thomas R. Ioerger:
Dual ICA to extract interacting sets of genes and conditions from transcriptomic data. BCB 2023: 8:1-8:13
