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@article{DBLP:journals/candc/AlexandarYU22,
  author       = {Soundarya Priya Alexandar and
                  Ragothaman Yennamalli and
                  Venkatasubramanian Ulaganathan},
  title        = {Coarse grained modelling highlights the binding differences in the
                  two different allosteric sites of the Human Kinesin {EG5} and its
                  implications in inhibitor design},
  journal      = {Comput. Biol. Chem.},
  volume       = {99},
  pages        = {107708},
  year         = {2022},
  url          = {https://doi.org/10.1016/j.compbiolchem.2022.107708},
  doi          = {10.1016/J.COMPBIOLCHEM.2022.107708},
  timestamp    = {Mon, 28 Aug 2023 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/candc/AlexandarYU22.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}

@article{DBLP:journals/candc/AlvaradoOLVPVLV22,
  author       = {Ysaias Jos{\'{e}} Alvarado and
                  Yosmari Olivarez and
                  Carla Lossada and
                  Joan Vera{-}Villalobos and
                  Jos{\'{e}} Luis Paz and
                  Eddy Vera and
                  Marcos Loro{\~{n}}o and
                  Alejandro Vivas and
                  Fernando Javier Torres and
                  Laura N. Jeffreys and
                  Mar{\'{\i}}a Laura Hurtado{-}Le{\'{o}}n and
                  Lenin Gonz{\'{a}}lez{-}Paz},
  title        = {Interaction of the new inhibitor paxlovid {(PF-07321332)} and ivermectin
                  with the monomer of the main protease SARS-CoV-2: {A} volumetric study
                  based on molecular dynamics, elastic networks, classical thermodynamics
                  and {SPT}},
  journal      = {Comput. Biol. Chem.},
  volume       = {99},
  pages        = {107692},
  year         = {2022},
  url          = {https://doi.org/10.1016/j.compbiolchem.2022.107692},
  doi          = {10.1016/J.COMPBIOLCHEM.2022.107692},
  timestamp    = {Sat, 30 Sep 2023 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/candc/AlvaradoOLVPVLV22.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}

@article{DBLP:journals/candc/AnL22,
  author       = {Yeeun An and
                  Chaeyoung Lee},
  title        = {Mixed model-based eQTL analysis reveals lncRNAs associated with regulation
                  of genes involved in sex determination and spermatogenesis: The key
                  to understanding human gender imbalance},
  journal      = {Comput. Biol. Chem.},
  volume       = {99},
  pages        = {107713},
  year         = {2022},
  url          = {https://doi.org/10.1016/j.compbiolchem.2022.107713},
  doi          = {10.1016/J.COMPBIOLCHEM.2022.107713},
  timestamp    = {Mon, 28 Aug 2023 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/candc/AnL22.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}

@article{DBLP:journals/candc/BehjatiZAN22,
  author       = {Armin Behjati and
                  Fatemeh Zare{-}Mirakabad and
                  Seyed Shahriar Arab and
                  Abbas Nowzari{-}Dalini},
  title        = {Protein sequence profile prediction using ProtAlbert transformer},
  journal      = {Comput. Biol. Chem.},
  volume       = {99},
  pages        = {107717},
  year         = {2022},
  url          = {https://doi.org/10.1016/j.compbiolchem.2022.107717},
  doi          = {10.1016/J.COMPBIOLCHEM.2022.107717},
  timestamp    = {Mon, 28 Aug 2023 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/candc/BehjatiZAN22.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}

@article{DBLP:journals/candc/BiswasDNN22,
  author       = {Saptarshi Biswas and
                  Sumagna Dey and
                  Pradyut Nath and
                  Subhrapratim Nath},
  title        = {Cipher constrained encoding for constraint optimization in extended
                  nucleic acid memory},
  journal      = {Comput. Biol. Chem.},
  volume       = {99},
  pages        = {107696},
  year         = {2022},
  url          = {https://doi.org/10.1016/j.compbiolchem.2022.107696},
  doi          = {10.1016/J.COMPBIOLCHEM.2022.107696},
  timestamp    = {Sat, 30 Sep 2023 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/candc/BiswasDNN22.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}

@article{DBLP:journals/candc/DanielssonKMCBS22,
  author       = {Annemarie Danielsson and
                  Malgorzata M. Kogut and
                  Martyna Maszota{-}Zieleniak and
                  Pradeep Chopra and
                  Geert{-}Jan Boons and
                  Sergey A. Samsonov},
  title        = {Molecular dynamics-based descriptors of 3-O-Sulfated Heparan sulfate
                  as contributors of protein binding specificity},
  journal      = {Comput. Biol. Chem.},
  volume       = {99},
  pages        = {107716},
  year         = {2022},
  url          = {https://doi.org/10.1016/j.compbiolchem.2022.107716},
  doi          = {10.1016/J.COMPBIOLCHEM.2022.107716},
  timestamp    = {Sat, 30 Sep 2023 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/candc/DanielssonKMCBS22.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}

@article{DBLP:journals/candc/HeLWWLZCY22,
  author       = {Dian He and
                  Xuedong Li and
                  Songsong Wang and
                  Chengzhao Wang and
                  Xingang Liu and
                  Yang Zhang and
                  Yan Cui and
                  Sijiu Yu},
  title        = {Mechanism of drug resistance of {BVDV} induced by {F224S} mutation
                  in RdRp: {A} case study of \emph{VP32947}},
  journal      = {Comput. Biol. Chem.},
  volume       = {99},
  pages        = {107715},
  year         = {2022},
  url          = {https://doi.org/10.1016/j.compbiolchem.2022.107715},
  doi          = {10.1016/J.COMPBIOLCHEM.2022.107715},
  timestamp    = {Sat, 30 Sep 2023 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/candc/HeLWWLZCY22.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}

@article{DBLP:journals/candc/HuangSYQLT22,
  author       = {Xiaoqian Huang and
                  Yi Shi and
                  Jing Yan and
                  Wenyan Qu and
                  Xiaoyi Li and
                  Jianjun Tan},
  title        = {{LPI-CSFFR:} Combining serial fusion with feature reuse for predicting
                  LncRNA-protein interactions},
  journal      = {Comput. Biol. Chem.},
  volume       = {99},
  pages        = {107718},
  year         = {2022},
  url          = {https://doi.org/10.1016/j.compbiolchem.2022.107718},
  doi          = {10.1016/J.COMPBIOLCHEM.2022.107718},
  timestamp    = {Mon, 28 Aug 2023 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/candc/HuangSYQLT22.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}

@article{DBLP:journals/candc/KeyvanpourHM22,
  author       = {Mohammad Reza Keyvanpour and
                  Faraneh Haddadi and
                  Soheila Mehrmolaei},
  title        = {{DTIP-TC2A:} An analytical framework for drug-target interactions
                  prediction methods},
  journal      = {Comput. Biol. Chem.},
  volume       = {99},
  pages        = {107707},
  year         = {2022},
  url          = {https://doi.org/10.1016/j.compbiolchem.2022.107707},
  doi          = {10.1016/J.COMPBIOLCHEM.2022.107707},
  timestamp    = {Mon, 28 Aug 2023 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/candc/KeyvanpourHM22.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}

@article{DBLP:journals/candc/KogutDRS22,
  author       = {Malgorzata M. Kogut and
                  Annemarie Danielsson and
                  Sylvie Ricard{-}Blum and
                  Sergey A. Samsonov},
  title        = {Impact of calcium ions on the structural and dynamic properties of
                  heparin oligosaccharides by computational analysis},
  journal      = {Comput. Biol. Chem.},
  volume       = {99},
  pages        = {107727},
  year         = {2022},
  url          = {https://doi.org/10.1016/j.compbiolchem.2022.107727},
  doi          = {10.1016/J.COMPBIOLCHEM.2022.107727},
  timestamp    = {Sat, 30 Sep 2023 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/candc/KogutDRS22.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}

@article{DBLP:journals/candc/LeHNC22,
  author       = {Nguyen{-}Quoc{-}Khanh Le and
                  Quang{-}Thai Ho and
                  Van{-}Nui Nguyen and
                  Jung{-}Su Chang},
  title        = {BERT-Promoter: An improved sequence-based predictor of {DNA} promoter
                  using {BERT} pre-trained model and {SHAP} feature selection},
  journal      = {Comput. Biol. Chem.},
  volume       = {99},
  pages        = {107732},
  year         = {2022},
  url          = {https://doi.org/10.1016/j.compbiolchem.2022.107732},
  doi          = {10.1016/J.COMPBIOLCHEM.2022.107732},
  timestamp    = {Mon, 28 Aug 2023 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/candc/LeHNC22.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}

@article{DBLP:journals/candc/LiLLXL22,
  author       = {Guanghui Li and
                  Yawei Lin and
                  Jiawei Luo and
                  Qiu Xiao and
                  Cheng Liang},
  title        = {{GGAECDA:} Predicting circRNA-disease associations using graph autoencoder
                  based on graph representation learning},
  journal      = {Comput. Biol. Chem.},
  volume       = {99},
  pages        = {107722},
  year         = {2022},
  url          = {https://doi.org/10.1016/j.compbiolchem.2022.107722},
  doi          = {10.1016/J.COMPBIOLCHEM.2022.107722},
  timestamp    = {Mon, 28 Aug 2023 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/candc/LiLLXL22.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}

@article{DBLP:journals/candc/LiYXYI22,
  author       = {Yi Li and
                  Yaning Yang and
                  Xu Steven Xu and
                  Min Yuan and
                  Alzheimer's Disease Neuroimaging Initiative},
  title        = {Bias correction for multiple covariate analysis using empirical bayesian
                  estimation in mixed-effects models for longitudinal data},
  journal      = {Comput. Biol. Chem.},
  volume       = {99},
  pages        = {107697},
  year         = {2022},
  url          = {https://doi.org/10.1016/j.compbiolchem.2022.107697},
  doi          = {10.1016/J.COMPBIOLCHEM.2022.107697},
  timestamp    = {Mon, 28 Aug 2023 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/candc/LiYXYI22.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}

@article{DBLP:journals/candc/MentesKUY22,
  author       = {Muratcan Mentes and
                  Basak Buse Karakuzulu and
                  G{\"{o}}nl{\"{u}}m Bahar U{\c{c}}ar and
                  Cihangir Yandim},
  title        = {Comparative molecular dynamics analyses on {PIK3CA} hotspot mutations
                  with PI3K{\(\alpha\)} specific inhibitors and {ATP}},
  journal      = {Comput. Biol. Chem.},
  volume       = {99},
  pages        = {107726},
  year         = {2022},
  url          = {https://doi.org/10.1016/j.compbiolchem.2022.107726},
  doi          = {10.1016/J.COMPBIOLCHEM.2022.107726},
  timestamp    = {Sat, 30 Sep 2023 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/candc/MentesKUY22.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}

@article{DBLP:journals/candc/NewtonRZS22,
  author       = {M. A. Hakim Newton and
                  Julia Rahman and
                  Rianon Zaman and
                  Abdul Sattar},
  title        = {Enhancing protein contact map prediction accuracy via ensembles of
                  inter-residue distance predictors},
  journal      = {Comput. Biol. Chem.},
  volume       = {99},
  pages        = {107700},
  year         = {2022},
  url          = {https://doi.org/10.1016/j.compbiolchem.2022.107700},
  doi          = {10.1016/J.COMPBIOLCHEM.2022.107700},
  timestamp    = {Mon, 28 Aug 2023 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/candc/NewtonRZS22.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}

@article{DBLP:journals/candc/ShiSZLLYPCDS22,
  author       = {Yanshuang Shi and
                  Mengke Sheng and
                  Qing Zhou and
                  Yuyao Liao and
                  Lijing Lv and
                  Jiaqi Yang and
                  Xinhui Peng and
                  Shuai Cen and
                  Xingxing Dai and
                  Xinyuan Shi},
  title        = {Construction of the small intestine on molecular dynamics simulation
                  and preliminary exploration of drug intestinal absorption prediction},
  journal      = {Comput. Biol. Chem.},
  volume       = {99},
  pages        = {107724},
  year         = {2022},
  url          = {https://doi.org/10.1016/j.compbiolchem.2022.107724},
  doi          = {10.1016/J.COMPBIOLCHEM.2022.107724},
  timestamp    = {Mon, 28 Aug 2023 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/candc/ShiSZLLYPCDS22.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}

@article{DBLP:journals/candc/SilveiraGSM22,
  author       = {Daner Acunha Silveira and
                  Shantanu Gupta and
                  Marialva Sinigaglia and
                  Jos{\'{e}} Carlos Merino Mombach},
  title        = {The Wnt pathway can stabilize hybrid phenotypes in the epithelial-mesenchymal
                  transition: {A} logical modeling approach},
  journal      = {Comput. Biol. Chem.},
  volume       = {99},
  pages        = {107714},
  year         = {2022},
  url          = {https://doi.org/10.1016/j.compbiolchem.2022.107714},
  doi          = {10.1016/J.COMPBIOLCHEM.2022.107714},
  timestamp    = {Mon, 28 Aug 2023 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/candc/SilveiraGSM22.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}

@article{DBLP:journals/candc/SinghJKKJMS22,
  author       = {Ekampreet Singh and
                  Rajat Kumar Jha and
                  Rameez Jabeer Khan and
                  Ankit Kumar and
                  Monika Jain and
                  Jayaraman Muthukumaran and
                  Amit Kumar Singh},
  title        = {A computational essential dynamics approach to investigate structural
                  influences of ligand binding on Papain like protease from SARS-CoV-2},
  journal      = {Comput. Biol. Chem.},
  volume       = {99},
  pages        = {107721},
  year         = {2022},
  url          = {https://doi.org/10.1016/j.compbiolchem.2022.107721},
  doi          = {10.1016/J.COMPBIOLCHEM.2022.107721},
  timestamp    = {Sat, 30 Sep 2023 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/candc/SinghJKKJMS22.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}

@article{DBLP:journals/candc/UbaALW22,
  author       = {Abdullahi Ibrahim Uba and
                  Harika Aluwala and
                  Haiguang Liu and
                  Chun Wu},
  title        = {Elucidation of partial activation of cannabinoid receptor type 2 and
                  identification of potential partial agonists: Molecular dynamics simulation
                  and structure-based virtual screening},
  journal      = {Comput. Biol. Chem.},
  volume       = {99},
  pages        = {107723},
  year         = {2022},
  url          = {https://doi.org/10.1016/j.compbiolchem.2022.107723},
  doi          = {10.1016/J.COMPBIOLCHEM.2022.107723},
  timestamp    = {Mon, 05 Feb 2024 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/candc/UbaALW22.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}

@article{DBLP:journals/candc/WangCPLY22,
  author       = {Zihang Wang and
                  Yingbo Cui and
                  Shaoliang Peng and
                  Xiangke Liao and
                  Yangbo Yu},
  title        = {MinimapR: {A} parallel alignment tool for the analysis of large-scale
                  third-generation sequencing data},
  journal      = {Comput. Biol. Chem.},
  volume       = {99},
  pages        = {107735},
  year         = {2022},
  url          = {https://doi.org/10.1016/j.compbiolchem.2022.107735},
  doi          = {10.1016/J.COMPBIOLCHEM.2022.107735},
  timestamp    = {Mon, 05 Feb 2024 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/candc/WangCPLY22.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}

@article{DBLP:journals/candc/WangLH22,
  author       = {Xuan Wang and
                  Junqing Li and
                  Tihao Huang},
  title        = {{CNVABNN:} An AdaBoost algorithm and neural networks-based detection
                  of copy number variations from {NGS} data},
  journal      = {Comput. Biol. Chem.},
  volume       = {99},
  pages        = {107720},
  year         = {2022},
  url          = {https://doi.org/10.1016/j.compbiolchem.2022.107720},
  doi          = {10.1016/J.COMPBIOLCHEM.2022.107720},
  timestamp    = {Mon, 28 Aug 2023 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/candc/WangLH22.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}

@article{DBLP:journals/candc/XieCQWHLL22,
  author       = {Yayu Xie and
                  Pei Cao and
                  Yuan Qin and
                  Xiru Wu and
                  Bingyao Huang and
                  Kai Li and
                  Yonghong Liu},
  title        = {Catalytic activity \emph{in vitro} of the human protein kinase {ASK1}
                  mutants: Experimental and molecular simulation study},
  journal      = {Comput. Biol. Chem.},
  volume       = {99},
  pages        = {107712},
  year         = {2022},
  url          = {https://doi.org/10.1016/j.compbiolchem.2022.107712},
  doi          = {10.1016/J.COMPBIOLCHEM.2022.107712},
  timestamp    = {Mon, 28 Aug 2023 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/candc/XieCQWHLL22.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}

@article{DBLP:journals/candc/YoonJKLJ22,
  author       = {Hye{-}Jin Yoon and
                  Jian Jeong and
                  Guun Kim and
                  Hyung Ho Lee and
                  Soonmin Jang},
  title        = {The point mutation of the cholesterol trafficking membrane protein
                  {NPC1} may affect its proper function in more than a single step:
                  Molecular dynamics simulation study},
  journal      = {Comput. Biol. Chem.},
  volume       = {99},
  pages        = {107725},
  year         = {2022},
  url          = {https://doi.org/10.1016/j.compbiolchem.2022.107725},
  doi          = {10.1016/J.COMPBIOLCHEM.2022.107725},
  timestamp    = {Sat, 08 Jun 2024 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/candc/YoonJKLJ22.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}

@article{DBLP:journals/candc/ZhangHJWMZMZW22,
  author       = {Zhigang Zhang and
                  Baichun Hu and
                  Johnson Joseph and
                  Ying Wang and
                  Jianping Mao and
                  Haoyu Zhang and
                  Qi Ma and
                  Yaoliang Zhang and
                  Jian Wang},
  title        = {Stable H-bond networks are crucial for selective {CDK4} inhibition
                  revealed from comprehensive \emph{in silico} investigation},
  journal      = {Comput. Biol. Chem.},
  volume       = {99},
  pages        = {107699},
  year         = {2022},
  url          = {https://doi.org/10.1016/j.compbiolchem.2022.107699},
  doi          = {10.1016/J.COMPBIOLCHEM.2022.107699},
  timestamp    = {Mon, 28 Aug 2023 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/candc/ZhangHJWMZMZW22.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}

@article{DBLP:journals/candc/ZhangJ22,
  author       = {Zhong{-}Rui Zhang and
                  Zhen{-}Ran Jiang},
  title        = {GraphDPA: Predicting drug-pathway associations by graph convolutional
                  networks},
  journal      = {Comput. Biol. Chem.},
  volume       = {99},
  pages        = {107719},
  year         = {2022},
  url          = {https://doi.org/10.1016/j.compbiolchem.2022.107719},
  doi          = {10.1016/J.COMPBIOLCHEM.2022.107719},
  timestamp    = {Mon, 28 Aug 2023 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/candc/ZhangJ22.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}

@article{DBLP:journals/candc/ZouYY22,
  author       = {Hongliang Zou and
                  Fan Yang and
                  Zhijian Yin},
  title        = {Integrating multiple sequence features for identifying anticancer
                  peptides},
  journal      = {Comput. Biol. Chem.},
  volume       = {99},
  pages        = {107711},
  year         = {2022},
  url          = {https://doi.org/10.1016/j.compbiolchem.2022.107711},
  doi          = {10.1016/J.COMPBIOLCHEM.2022.107711},
  timestamp    = {Mon, 28 Aug 2023 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/candc/ZouYY22.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}

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