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@inproceedings{DBLP:conf/gcb/Alexandrov09,
  author       = {Theodore Alexandrov},
  editor       = {Ivo Grosse and
                  Steffen Neumann and
                  Stefan Posch and
                  Falk Schreiber and
                  Peter F. Stadler},
  title        = {Self-taught Learning for Classification of Mass Spectrometry Data:
                  {A} Case Study of Colorectal Cancer},
  booktitle    = {German Conference on Bioinformatics 2009, 28th to 30th September 2009,
                  Martin Luther University Halle-Wittenberg, Germany},
  series       = {{LNI}},
  volume       = {{P-157}},
  pages        = {45--54},
  publisher    = {{GI}},
  year         = {2009},
  url          = {https://dl.gi.de/handle/20.500.12116/20309},
  timestamp    = {Tue, 04 Jul 2023 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/conf/gcb/Alexandrov09.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}

@inproceedings{DBLP:conf/gcb/ChokkathukalamPFF09,
  author       = {Achuthanunni Chokkathukalam and
                  Mark G. Poolman and
                  Chiara Ferrazzi and
                  David A. Fell},
  editor       = {Ivo Grosse and
                  Steffen Neumann and
                  Stefan Posch and
                  Falk Schreiber and
                  Peter F. Stadler},
  title        = {Expression Profiles of Metabolic Models to Predict Compartmentation
                  of Enzymes in Multicompartmental Systems},
  booktitle    = {German Conference on Bioinformatics 2009, 28th to 30th September 2009,
                  Martin Luther University Halle-Wittenberg, Germany},
  series       = {{LNI}},
  volume       = {{P-157}},
  pages        = {153--162},
  publisher    = {{GI}},
  year         = {2009},
  url          = {https://dl.gi.de/handle/20.500.12116/20299},
  timestamp    = {Tue, 04 Jul 2023 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/conf/gcb/ChokkathukalamPFF09.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}

@inproceedings{DBLP:conf/gcb/DehofRLH09,
  author       = {Anna Katharina Dehof and
                  Alexander Rurainski and
                  Hans{-}Peter Lenhof and
                  Andreas Hildebrandt},
  editor       = {Ivo Grosse and
                  Steffen Neumann and
                  Stefan Posch and
                  Falk Schreiber and
                  Peter F. Stadler},
  title        = {Automated Bond Order Assignment as an Optimization Problem},
  booktitle    = {German Conference on Bioinformatics 2009, 28th to 30th September 2009,
                  Martin Luther University Halle-Wittenberg, Germany},
  series       = {{LNI}},
  volume       = {{P-157}},
  pages        = {201--209},
  publisher    = {{GI}},
  year         = {2009},
  url          = {https://dl.gi.de/handle/20.500.12116/20304},
  timestamp    = {Tue, 04 Jul 2023 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/conf/gcb/DehofRLH09.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}

@inproceedings{DBLP:conf/gcb/FesterSS09,
  author       = {Thilo Fester and
                  Falk Schreiber and
                  Marc Strickert},
  editor       = {Ivo Grosse and
                  Steffen Neumann and
                  Stefan Posch and
                  Falk Schreiber and
                  Peter F. Stadler},
  title        = {CUDA-based Multi-core Implementation of MDS-based Bioinformatics Algorithms},
  booktitle    = {German Conference on Bioinformatics 2009, 28th to 30th September 2009,
                  Martin Luther University Halle-Wittenberg, Germany},
  series       = {{LNI}},
  volume       = {{P-157}},
  pages        = {67--79},
  publisher    = {{GI}},
  year         = {2009},
  url          = {https://dl.gi.de/handle/20.500.12116/20311},
  timestamp    = {Tue, 04 Jul 2023 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/conf/gcb/FesterSS09.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}

@inproceedings{DBLP:conf/gcb/FoberMMH09,
  author       = {Thomas Fober and
                  Marco Mernberger and
                  Ralph Moritz and
                  Eyke H{\"{u}}llermeier},
  editor       = {Ivo Grosse and
                  Steffen Neumann and
                  Stefan Posch and
                  Falk Schreiber and
                  Peter F. Stadler},
  title        = {Graph-Kernels for the Comparative Analysis of Protein Active Sites},
  booktitle    = {German Conference on Bioinformatics 2009, 28th to 30th September 2009,
                  Martin Luther University Halle-Wittenberg, Germany},
  series       = {{LNI}},
  volume       = {{P-157}},
  pages        = {21--31},
  publisher    = {{GI}},
  year         = {2009},
  url          = {https://dl.gi.de/handle/20.500.12116/20306},
  timestamp    = {Tue, 04 Jul 2023 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/conf/gcb/FoberMMH09.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}

@inproceedings{DBLP:conf/gcb/GorronRBRT09,
  author       = {Eduardo Gorr{\'{o}}n and
                  Fausto Rodr{\'{\i}}guez and
                  Diana Bernal and
                  Silvia Restrepo and
                  Joe Tohme},
  editor       = {Ivo Grosse and
                  Steffen Neumann and
                  Stefan Posch and
                  Falk Schreiber and
                  Peter F. Stadler},
  title        = {A New Method for the Design of Degenerate Primers and its Use to Identify
                  Homologues of Apomixis-associated Genes in Brachiaria},
  booktitle    = {German Conference on Bioinformatics 2009, 28th to 30th September 2009,
                  Martin Luther University Halle-Wittenberg, Germany},
  series       = {{LNI}},
  volume       = {{P-157}},
  pages        = {117--131},
  publisher    = {{GI}},
  year         = {2009},
  url          = {https://dl.gi.de/handle/20.500.12116/20296},
  timestamp    = {Tue, 04 Jul 2023 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/conf/gcb/GorronRBRT09.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}

@inproceedings{DBLP:conf/gcb/HoraiAONKN09,
  author       = {Hisayuki Horai and
                  Masanori Arita and
                  Yuya Ojima and
                  Yoshito Nihei and
                  Shigehiko Kanaya and
                  Takeshi Nishioka},
  editor       = {Ivo Grosse and
                  Steffen Neumann and
                  Stefan Posch and
                  Falk Schreiber and
                  Peter F. Stadler},
  title        = {Traceable Analysis of Multiple-Stage Mass Spectra through Precursor-Product
                  Annotations},
  booktitle    = {German Conference on Bioinformatics 2009, 28th to 30th September 2009,
                  Martin Luther University Halle-Wittenberg, Germany},
  series       = {{LNI}},
  volume       = {{P-157}},
  pages        = {173--178},
  publisher    = {{GI}},
  year         = {2009},
  url          = {https://dl.gi.de/handle/20.500.12116/20301},
  timestamp    = {Tue, 04 Jul 2023 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/conf/gcb/HoraiAONKN09.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}

@inproceedings{DBLP:conf/gcb/IngallsMMPH09,
  author       = {Todd Ingalls and
                  Georg Martius and
                  Manja Marz and
                  Sonja J. Proshaka and
                  Marc Hellmuth},
  editor       = {Ivo Grosse and
                  Steffen Neumann and
                  Stefan Posch and
                  Falk Schreiber and
                  Peter F. Stadler},
  title        = {Converting {DNA} to Music: ComposAlign},
  booktitle    = {German Conference on Bioinformatics 2009, 28th to 30th September 2009,
                  Martin Luther University Halle-Wittenberg, Germany},
  series       = {{LNI}},
  volume       = {{P-157}},
  pages        = {93--103},
  publisher    = {{GI}},
  year         = {2009},
  url          = {https://dl.gi.de/handle/20.500.12116/20313},
  timestamp    = {Tue, 04 Jul 2023 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/conf/gcb/IngallsMMPH09.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}

@inproceedings{DBLP:conf/gcb/KaletaFBS09,
  author       = {Christoph Kaleta and
                  Luis F. de Figueiredo and
                  J{\"{o}}rn Behre and
                  Stefan Schuster},
  editor       = {Ivo Grosse and
                  Steffen Neumann and
                  Stefan Posch and
                  Falk Schreiber and
                  Peter F. Stadler},
  title        = {Computing Elementary Flux Modes in Genome-scale Metabolic Networks},
  booktitle    = {German Conference on Bioinformatics 2009, 28th to 30th September 2009,
                  Martin Luther University Halle-Wittenberg, Germany},
  series       = {{LNI}},
  volume       = {{P-157}},
  pages        = {179--189},
  publisher    = {{GI}},
  year         = {2009},
  url          = {https://dl.gi.de/handle/20.500.12116/20302},
  timestamp    = {Tue, 04 Jul 2023 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/conf/gcb/KaletaFBS09.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}

@inproceedings{DBLP:conf/gcb/KronfeldDAZ09,
  author       = {Marcel Kronfeld and
                  Andreas Dr{\"{a}}ger and
                  Moritz Aschoff and
                  Andreas Zell},
  editor       = {Ivo Grosse and
                  Steffen Neumann and
                  Stefan Posch and
                  Falk Schreiber and
                  Peter F. Stadler},
  title        = {On the Benefits of Multimodal Optimization for Metablic Network Modeling},
  booktitle    = {German Conference on Bioinformatics 2009, 28th to 30th September 2009,
                  Martin Luther University Halle-Wittenberg, Germany},
  series       = {{LNI}},
  volume       = {{P-157}},
  pages        = {191--200},
  publisher    = {{GI}},
  year         = {2009},
  url          = {https://dl.gi.de/handle/20.500.12116/20303},
  timestamp    = {Tue, 04 Jul 2023 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/conf/gcb/KronfeldDAZ09.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}

@inproceedings{DBLP:conf/gcb/LorenzFH09,
  author       = {Ronny Lorenz and
                  Christoph Flamm and
                  Ivo L. Hofacker},
  editor       = {Ivo Grosse and
                  Steffen Neumann and
                  Stefan Posch and
                  Falk Schreiber and
                  Peter F. Stadler},
  title        = {2D Projections of {RNA} Folding Landscapes},
  booktitle    = {German Conference on Bioinformatics 2009, 28th to 30th September 2009,
                  Martin Luther University Halle-Wittenberg, Germany},
  series       = {{LNI}},
  volume       = {{P-157}},
  pages        = {11--20},
  publisher    = {{GI}},
  year         = {2009},
  url          = {https://dl.gi.de/handle/20.500.12116/20295},
  timestamp    = {Tue, 04 Jul 2023 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/conf/gcb/LorenzFH09.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}

@inproceedings{DBLP:conf/gcb/MenzelGS09,
  author       = {Peter Menzel and
                  Jan Gorodkin and
                  Peter F. Stadler},
  editor       = {Ivo Grosse and
                  Steffen Neumann and
                  Stefan Posch and
                  Falk Schreiber and
                  Peter F. Stadler},
  title        = {Maximum Likelihood Estimation of Weight Matrices for Targeted Homology
                  Search},
  booktitle    = {German Conference on Bioinformatics 2009, 28th to 30th September 2009,
                  Martin Luther University Halle-Wittenberg, Germany},
  series       = {{LNI}},
  volume       = {{P-157}},
  pages        = {211--220},
  publisher    = {{GI}},
  year         = {2009},
  url          = {https://dl.gi.de/handle/20.500.12116/20305},
  timestamp    = {Tue, 04 Jul 2023 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/conf/gcb/MenzelGS09.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}

@inproceedings{DBLP:conf/gcb/OuyangS09,
  author       = {Zhengyu Ouyang and
                  Mingzhou Song},
  editor       = {Ivo Grosse and
                  Steffen Neumann and
                  Stefan Posch and
                  Falk Schreiber and
                  Peter F. Stadler},
  title        = {Comparative Identification of Differential Interactions from Trajectories
                  of Dynamic Biological Networks},
  booktitle    = {German Conference on Bioinformatics 2009, 28th to 30th September 2009,
                  Martin Luther University Halle-Wittenberg, Germany},
  series       = {{LNI}},
  volume       = {{P-157}},
  pages        = {163--172},
  publisher    = {{GI}},
  year         = {2009},
  url          = {https://dl.gi.de/handle/20.500.12116/20300},
  timestamp    = {Tue, 04 Jul 2023 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/conf/gcb/OuyangS09.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}

@inproceedings{DBLP:conf/gcb/PernerAL09,
  author       = {Juliane Perner and
                  Andr{\'{e}} Altmann and
                  Thomas Lengauer},
  editor       = {Ivo Grosse and
                  Steffen Neumann and
                  Stefan Posch and
                  Falk Schreiber and
                  Peter F. Stadler},
  title        = {Semi-Supervised Learning for Improving Prediction of {HIV} Drug Resistance},
  booktitle    = {German Conference on Bioinformatics 2009, 28th to 30th September 2009,
                  Martin Luther University Halle-Wittenberg, Germany},
  series       = {{LNI}},
  volume       = {{P-157}},
  pages        = {55--65},
  publisher    = {{GI}},
  year         = {2009},
  url          = {https://dl.gi.de/handle/20.500.12116/20310},
  timestamp    = {Tue, 04 Jul 2023 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/conf/gcb/PernerAL09.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}

@inproceedings{DBLP:conf/gcb/RohnKS09,
  author       = {Hendrik Rohn and
                  Christian Klukas and
                  Falk Schreiber},
  editor       = {Ivo Grosse and
                  Steffen Neumann and
                  Stefan Posch and
                  Falk Schreiber and
                  Peter F. Stadler},
  title        = {Integration and Visualisation of Multimodal Biological Data},
  booktitle    = {German Conference on Bioinformatics 2009, 28th to 30th September 2009,
                  Martin Luther University Halle-Wittenberg, Germany},
  series       = {{LNI}},
  volume       = {{P-157}},
  pages        = {105--115},
  publisher    = {{GI}},
  year         = {2009},
  url          = {https://dl.gi.de/handle/20.500.12116/20314},
  timestamp    = {Tue, 04 Jul 2023 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/conf/gcb/RohnKS09.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}

@inproceedings{DBLP:conf/gcb/RoyerPS09,
  author       = {Lo{\"{\i}}c Royer and
                  Conrad Plake and
                  Michael Schroeder},
  editor       = {Ivo Grosse and
                  Steffen Neumann and
                  Stefan Posch and
                  Falk Schreiber and
                  Peter F. Stadler},
  title        = {Identifying Hot Cancer and Novel Novel Cell-cycle Genes from Literature},
  booktitle    = {German Conference on Bioinformatics 2009, 28th to 30th September 2009,
                  Martin Luther University Halle-Wittenberg, Germany},
  series       = {{LNI}},
  volume       = {{P-157}},
  pages        = {81--92},
  publisher    = {{GI}},
  year         = {2009},
  url          = {https://dl.gi.de/handle/20.500.12116/20312},
  timestamp    = {Tue, 04 Jul 2023 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/conf/gcb/RoyerPS09.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}

@inproceedings{DBLP:conf/gcb/SongHZBE09,
  author       = {Mingzhou Song and
                  Chung{-}Chien Hong and
                  Yang Zhang and
                  Laura Buttitta and
                  Bruce Edgar},
  editor       = {Ivo Grosse and
                  Steffen Neumann and
                  Stefan Posch and
                  Falk Schreiber and
                  Peter F. Stadler},
  title        = {Comparative Generalized Logic Modeling Reveals Differential Gene Interactions
                  during Cell Cycle Exit in Drosophila Wing Development},
  booktitle    = {German Conference on Bioinformatics 2009, 28th to 30th September 2009,
                  Martin Luther University Halle-Wittenberg, Germany},
  series       = {{LNI}},
  volume       = {{P-157}},
  pages        = {143--152},
  publisher    = {{GI}},
  year         = {2009},
  url          = {https://dl.gi.de/handle/20.500.12116/20298},
  timestamp    = {Tue, 04 Jul 2023 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/conf/gcb/SongHZBE09.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}

@inproceedings{DBLP:conf/gcb/StegleDWMMGB09,
  author       = {Oliver Stegle and
                  Katherine J. Denby and
                  David L. Wild and
                  Stuart McHattie and
                  Andrew Meade and
                  Zoubin Ghahramani and
                  Karsten M. Borgwardt},
  editor       = {Ivo Grosse and
                  Steffen Neumann and
                  Stefan Posch and
                  Falk Schreiber and
                  Peter F. Stadler},
  title        = {Discovering Temporal Patterns of Differential Gene Expression in Microarray
                  Time Series},
  booktitle    = {German Conference on Bioinformatics 2009, 28th to 30th September 2009,
                  Martin Luther University Halle-Wittenberg, Germany},
  series       = {{LNI}},
  volume       = {{P-157}},
  pages        = {133--142},
  publisher    = {{GI}},
  year         = {2009},
  url          = {https://dl.gi.de/handle/20.500.12116/20297},
  timestamp    = {Tue, 04 Jul 2023 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/conf/gcb/StegleDWMMGB09.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}

@inproceedings{DBLP:conf/gcb/WohlersPDK09,
  author       = {Inken Wohlers and
                  Lars Petzold and
                  Francisco S. Domingues and
                  Gunnar W. Klau},
  editor       = {Ivo Grosse and
                  Steffen Neumann and
                  Stefan Posch and
                  Falk Schreiber and
                  Peter F. Stadler},
  title        = {Aligning Protein Structures Using Distance Matrices and Combinatorial
                  Optimization},
  booktitle    = {German Conference on Bioinformatics 2009, 28th to 30th September 2009,
                  Martin Luther University Halle-Wittenberg, Germany},
  series       = {{LNI}},
  volume       = {{P-157}},
  pages        = {33--43},
  publisher    = {{GI}},
  year         = {2009},
  url          = {https://dl.gi.de/handle/20.500.12116/20308},
  timestamp    = {Tue, 04 Jul 2023 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/conf/gcb/WohlersPDK09.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}

@proceedings{DBLP:conf/gcb/2009,
  editor       = {Ivo Grosse and
                  Steffen Neumann and
                  Stefan Posch and
                  Falk Schreiber and
                  Peter F. Stadler},
  title        = {German Conference on Bioinformatics 2009, 28th to 30th September 2009,
                  Martin Luther University Halle-Wittenberg, Germany},
  series       = {{LNI}},
  volume       = {{P-157}},
  publisher    = {{GI}},
  year         = {2009},
  url          = {https://dl.gi.de/handle/20.500.12116/21225},
  isbn         = {978-3-88579-251-2},
  timestamp    = {Wed, 13 Jan 2021 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/conf/gcb/2009.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}

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