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@inproceedings{DBLP:conf/bionlp/Al-HussainiWM23,
author = {Irfan Al{-}Hussaini and
Austin Wu and
Cassie S. Mitchell},
editor = {Dina Demner{-}Fushman and
Sophia Ananiadou and
Kevin Cohen},
title = {Pathology Dynamics at BioLaySumm: the trade-off between Readability,
Relevance, and Factuality in Lay Summarization},
booktitle = {The 22nd Workshop on Biomedical Natural Language Processing and BioNLP
Shared Tasks, BioNLP@ACL 2023, Toronto, Canada, 13 July 2023},
pages = {592--601},
publisher = {Association for Computational Linguistics},
year = {2023},
url = {https://doi.org/10.18653/v1/2023.bionlp-1.63},
doi = {10.18653/V1/2023.BIONLP-1.63},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/bionlp/Al-HussainiWM23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bionlp/ArannilDR23,
author = {Vinayak Arannil and
Tomal Deb and
Atanu Roy},
editor = {Dina Demner{-}Fushman and
Sophia Ananiadou and
Kevin Cohen},
title = {{ADEQA:} {A} Question Answer based approach for joint ADE-Suspect
Extraction using Sequence-To-Sequence Transformers},
booktitle = {The 22nd Workshop on Biomedical Natural Language Processing and BioNLP
Shared Tasks, BioNLP@ACL 2023, Toronto, Canada, 13 July 2023},
pages = {206--214},
publisher = {Association for Computational Linguistics},
year = {2023},
url = {https://doi.org/10.18653/v1/2023.bionlp-1.17},
doi = {10.18653/V1/2023.BIONLP-1.17},
timestamp = {Sun, 06 Oct 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/bionlp/ArannilDR23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bionlp/AsadaM23,
author = {Masaki Asada and
Makoto Miwa},
editor = {Dina Demner{-}Fushman and
Sophia Ananiadou and
Kevin Cohen},
title = {BioNART: {A} Biomedical Non-AutoRegressive Transformer for Natural
Language Generation},
booktitle = {The 22nd Workshop on Biomedical Natural Language Processing and BioNLP
Shared Tasks, BioNLP@ACL 2023, Toronto, Canada, 13 July 2023},
pages = {369--376},
publisher = {Association for Computational Linguistics},
year = {2023},
url = {https://doi.org/10.18653/v1/2023.bionlp-1.34},
doi = {10.18653/V1/2023.BIONLP-1.34},
timestamp = {Thu, 10 Aug 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/bionlp/AsadaM23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bionlp/BannourRTN23,
author = {Nesrine Bannour and
Bastien Rance and
Xavier Tannier and
Aur{\'{e}}lie N{\'{e}}v{\'{e}}ol},
editor = {Dina Demner{-}Fushman and
Sophia Ananiadou and
Kevin Cohen},
title = {Event-independent temporal positioning: application to French clinical
text},
booktitle = {The 22nd Workshop on Biomedical Natural Language Processing and BioNLP
Shared Tasks, BioNLP@ACL 2023, Toronto, Canada, 13 July 2023},
pages = {191--205},
publisher = {Association for Computational Linguistics},
year = {2023},
url = {https://doi.org/10.18653/v1/2023.bionlp-1.16},
doi = {10.18653/V1/2023.BIONLP-1.16},
timestamp = {Mon, 05 Feb 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/bionlp/BannourRTN23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bionlp/BerheDMMDZ23,
author = {Aman Berhe and
Guillaume Draznieks and
Vincent Martenot and
Valentin Masdeu and
Lucas Davy and
Jean{-}Daniel Zucker},
editor = {Dina Demner{-}Fushman and
Sophia Ananiadou and
Kevin Cohen},
title = {AliBERT: {A} Pre-trained Language Model for French Biomedical Text},
booktitle = {The 22nd Workshop on Biomedical Natural Language Processing and BioNLP
Shared Tasks, BioNLP@ACL 2023, Toronto, Canada, 13 July 2023},
pages = {223--236},
publisher = {Association for Computational Linguistics},
year = {2023},
url = {https://doi.org/10.18653/v1/2023.bionlp-1.19},
doi = {10.18653/V1/2023.BIONLP-1.19},
timestamp = {Thu, 10 Aug 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/bionlp/BerheDMMDZ23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bionlp/CaoPRA23,
author = {Jiarun Cao and
Niels Peek and
Andrew G. Renehan and
Sophia Ananiadou},
editor = {Dina Demner{-}Fushman and
Sophia Ananiadou and
Kevin Cohen},
title = {Gaussian Distributed Prototypical Network for Few-shot Genomic Variant
Detection},
booktitle = {The 22nd Workshop on Biomedical Natural Language Processing and BioNLP
Shared Tasks, BioNLP@ACL 2023, Toronto, Canada, 13 July 2023},
pages = {26--36},
publisher = {Association for Computational Linguistics},
year = {2023},
url = {https://doi.org/10.18653/v1/2023.bionlp-1.2},
doi = {10.18653/V1/2023.BIONLP-1.2},
timestamp = {Thu, 10 Aug 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/bionlp/CaoPRA23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bionlp/ChandrasekharHH23,
author = {Shreya Chandrasekhar and
Chieh{-}Yang Huang and
Ting{-}Hao K. Huang},
editor = {Dina Demner{-}Fushman and
Sophia Ananiadou and
Kevin Cohen},
title = {Good Data, Large Data, or No Data? Comparing Three Approaches in Developing
Research Aspect Classifiers for Biomedical Papers},
booktitle = {The 22nd Workshop on Biomedical Natural Language Processing and BioNLP
Shared Tasks, BioNLP@ACL 2023, Toronto, Canada, 13 July 2023},
pages = {103--113},
publisher = {Association for Computational Linguistics},
year = {2023},
url = {https://doi.org/10.18653/v1/2023.bionlp-1.8},
doi = {10.18653/V1/2023.BIONLP-1.8},
timestamp = {Sun, 12 Nov 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/bionlp/ChandrasekharHH23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bionlp/ChenYL23,
author = {Chao{-}Yi Chen and
Jen{-}Hao Yang and
Lung{-}Hao Lee},
editor = {Dina Demner{-}Fushman and
Sophia Ananiadou and
Kevin Cohen},
title = {{NCUEE-NLP} at BioLaySumm Task 2: Readability-Controlled Summarization
of Biomedical Articles Using the {PRIMERA} Models},
booktitle = {The 22nd Workshop on Biomedical Natural Language Processing and BioNLP
Shared Tasks, BioNLP@ACL 2023, Toronto, Canada, 13 July 2023},
pages = {586--591},
publisher = {Association for Computational Linguistics},
year = {2023},
url = {https://doi.org/10.18653/v1/2023.bionlp-1.62},
doi = {10.18653/V1/2023.BIONLP-1.62},
timestamp = {Thu, 10 Aug 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/bionlp/ChenYL23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bionlp/ChhikaraPMCK23,
author = {Prateek Chhikara and
Ujjwal Pasupulety and
John Marshall and
Dhiraj Chaurasia and
Shweta Kumari},
editor = {Dina Demner{-}Fushman and
Sophia Ananiadou and
Kevin Cohen},
title = {Privacy Aware Question-Answering System for Online Mental Health Risk
Assessment},
booktitle = {The 22nd Workshop on Biomedical Natural Language Processing and BioNLP
Shared Tasks, BioNLP@ACL 2023, Toronto, Canada, 13 July 2023},
pages = {215--222},
publisher = {Association for Computational Linguistics},
year = {2023},
url = {https://doi.org/10.18653/v1/2023.bionlp-1.18},
doi = {10.18653/V1/2023.BIONLP-1.18},
timestamp = {Sun, 06 Oct 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/bionlp/ChhikaraPMCK23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bionlp/ChizhikovaDLM23,
author = {Mariia Chizhikova and
Manuel Carlos D{\'{\i}}az{-}Galiano and
Luis Alfonso Ure{\~{n}}a L{\'{o}}pez and
Mar{\'{\i}}a Teresa Mart{\'{\i}}n{-}Valdivia},
editor = {Dina Demner{-}Fushman and
Sophia Ananiadou and
Kevin Cohen},
title = {{SINAI} at RadSum23: Radiology Report Summarization Based on Domain-Specific
Sequence-To-Sequence Transformer Model},
booktitle = {The 22nd Workshop on Biomedical Natural Language Processing and BioNLP
Shared Tasks, BioNLP@ACL 2023, Toronto, Canada, 13 July 2023},
pages = {530--534},
publisher = {Association for Computational Linguistics},
year = {2023},
url = {https://doi.org/10.18653/v1/2023.bionlp-1.53},
doi = {10.18653/V1/2023.BIONLP-1.53},
timestamp = {Thu, 10 Aug 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/bionlp/ChizhikovaDLM23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bionlp/ColakK23,
author = {Cagla Colak and
Lknur Karadeniz},
editor = {Dina Demner{-}Fushman and
Sophia Ananiadou and
Kevin Cohen},
title = {ISIKSumm at BioLaySumm Task 1: BART-based Summarization System Enhanced
with Bio-Entity Labels},
booktitle = {The 22nd Workshop on Biomedical Natural Language Processing and BioNLP
Shared Tasks, BioNLP@ACL 2023, Toronto, Canada, 13 July 2023},
pages = {636--640},
publisher = {Association for Computational Linguistics},
year = {2023},
url = {https://doi.org/10.18653/v1/2023.bionlp-1.69},
doi = {10.18653/V1/2023.BIONLP-1.69},
timestamp = {Thu, 10 Aug 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/bionlp/ColakK23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bionlp/DekaJ023,
author = {Pritam Deka and
Anna Jurek{-}Loughrey and
Deepak P},
editor = {Dina Demner{-}Fushman and
Sophia Ananiadou and
Kevin Cohen},
title = {Multiple Evidence Combination for Fact-Checking of Health-Related
Information},
booktitle = {The 22nd Workshop on Biomedical Natural Language Processing and BioNLP
Shared Tasks, BioNLP@ACL 2023, Toronto, Canada, 13 July 2023},
pages = {237--247},
publisher = {Association for Computational Linguistics},
year = {2023},
url = {https://doi.org/10.18653/v1/2023.bionlp-1.20},
doi = {10.18653/V1/2023.BIONLP-1.20},
timestamp = {Thu, 10 Aug 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/bionlp/DekaJ023.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bionlp/DelbrouckVCL23,
author = {Jean{-}Benoit Delbrouck and
Maya Varma and
Pierre J. Chambon and
Curtis P. Langlotz},
editor = {Dina Demner{-}Fushman and
Sophia Ananiadou and
Kevin Cohen},
title = {Overview of the RadSum23 Shared Task on Multi-modal and Multi-anatomical
Radiology Report Summarization},
booktitle = {The 22nd Workshop on Biomedical Natural Language Processing and BioNLP
Shared Tasks, BioNLP@ACL 2023, Toronto, Canada, 13 July 2023},
pages = {478--482},
publisher = {Association for Computational Linguistics},
year = {2023},
url = {https://doi.org/10.18653/v1/2023.bionlp-1.45},
doi = {10.18653/V1/2023.BIONLP-1.45},
timestamp = {Thu, 10 Aug 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/bionlp/DelbrouckVCL23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bionlp/EsteveSH23,
author = {Vicent Ahuir Esteve and
Encarna Segarra and
Llu{\'{\i}}s F. Hurtado},
editor = {Dina Demner{-}Fushman and
Sophia Ananiadou and
Kevin Cohen},
title = {ELiRF-VRAIN at BioNLP Task 1B: Radiology Report Summarization},
booktitle = {The 22nd Workshop on Biomedical Natural Language Processing and BioNLP
Shared Tasks, BioNLP@ACL 2023, Toronto, Canada, 13 July 2023},
pages = {524--529},
publisher = {Association for Computational Linguistics},
year = {2023},
url = {https://doi.org/10.18653/v1/2023.bionlp-1.52},
doi = {10.18653/V1/2023.BIONLP-1.52},
timestamp = {Thu, 10 Aug 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/bionlp/EsteveSH23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bionlp/GaoD0A23,
author = {Yanjun Gao and
Dmitriy Dligach and
Timothy Miller and
Majid Afshar},
editor = {Dina Demner{-}Fushman and
Sophia Ananiadou and
Kevin Cohen},
title = {Overview of the Problem List Summarization (ProbSum) 2023 Shared Task
on Summarizing Patients' Active Diagnoses and Problems from Electronic
Health Record Progress Notes},
booktitle = {The 22nd Workshop on Biomedical Natural Language Processing and BioNLP
Shared Tasks, BioNLP@ACL 2023, Toronto, Canada, 13 July 2023},
pages = {461--467},
publisher = {Association for Computational Linguistics},
year = {2023},
url = {https://doi.org/10.18653/v1/2023.bionlp-1.43},
doi = {10.18653/V1/2023.BIONLP-1.43},
timestamp = {Thu, 10 Aug 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/bionlp/GaoD0A23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bionlp/GoldsackLXSSAL23,
author = {Tomas Goldsack and
Zheheng Luo and
Qianqian Xie and
Carolina Scarton and
Matthew Shardlow and
Sophia Ananiadou and
Chenghua Lin},
editor = {Dina Demner{-}Fushman and
Sophia Ananiadou and
Kevin Cohen},
title = {BioLaySumm 2023 Shared Task: Lay Summarisation of Biomedical Research
Articles},
booktitle = {The 22nd Workshop on Biomedical Natural Language Processing and BioNLP
Shared Tasks, BioNLP@ACL 2023, Toronto, Canada, 13 July 2023},
pages = {468--477},
publisher = {Association for Computational Linguistics},
year = {2023},
url = {https://doi.org/10.18653/v1/2023.bionlp-1.44},
doi = {10.18653/V1/2023.BIONLP-1.44},
timestamp = {Sun, 12 Nov 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/bionlp/GoldsackLXSSAL23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bionlp/Gutierrez0023,
author = {Bernal Jimenez Gutierrez and
Huan Sun and
Yu Su},
editor = {Dina Demner{-}Fushman and
Sophia Ananiadou and
Kevin Cohen},
title = {Biomedical Language Models are Robust to Sub-optimal Tokenization},
booktitle = {The 22nd Workshop on Biomedical Natural Language Processing and BioNLP
Shared Tasks, BioNLP@ACL 2023, Toronto, Canada, 13 July 2023},
pages = {350--362},
publisher = {Association for Computational Linguistics},
year = {2023},
url = {https://doi.org/10.18653/v1/2023.bionlp-1.32},
doi = {10.18653/V1/2023.BIONLP-1.32},
timestamp = {Thu, 10 Aug 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/bionlp/Gutierrez0023.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bionlp/IdaMS23,
author = {Ryuki Ida and
Makoto Miwa and
Yutaka Sasaki},
editor = {Dina Demner{-}Fushman and
Sophia Ananiadou and
Kevin Cohen},
title = {Biomedical Document Classification with Literature Graph Representations
of Bibliographies and Entities},
booktitle = {The 22nd Workshop on Biomedical Natural Language Processing and BioNLP
Shared Tasks, BioNLP@ACL 2023, Toronto, Canada, 13 July 2023},
pages = {385--395},
publisher = {Association for Computational Linguistics},
year = {2023},
url = {https://doi.org/10.18653/v1/2023.bionlp-1.36},
doi = {10.18653/V1/2023.BIONLP-1.36},
timestamp = {Thu, 10 Aug 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/bionlp/IdaMS23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bionlp/JahanLPH23,
author = {Israt Jahan and
Md. Tahmid Rahman Laskar and
Chun Peng and
Jimmy Xiangji Huang},
editor = {Dina Demner{-}Fushman and
Sophia Ananiadou and
Kevin Cohen},
title = {Evaluation of ChatGPT on Biomedical Tasks: {A} Zero-Shot Comparison
with Fine-Tuned Generative Transformers},
booktitle = {The 22nd Workshop on Biomedical Natural Language Processing and BioNLP
Shared Tasks, BioNLP@ACL 2023, Toronto, Canada, 13 July 2023},
pages = {326--336},
publisher = {Association for Computational Linguistics},
year = {2023},
url = {https://doi.org/10.18653/v1/2023.bionlp-1.30},
doi = {10.18653/V1/2023.BIONLP-1.30},
timestamp = {Wed, 20 Mar 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/bionlp/JahanLPH23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bionlp/KammerBWMS23,
author = {Niklas Kammer and
Florian Borchert and
Silvia Winkler and
Gerard de Melo and
Matthieu{-}P. Schapranow},
editor = {Dina Demner{-}Fushman and
Sophia Ananiadou and
Kevin Cohen},
title = {Resolving Elliptical Compounds in German Medical Text},
booktitle = {The 22nd Workshop on Biomedical Natural Language Processing and BioNLP
Shared Tasks, BioNLP@ACL 2023, Toronto, Canada, 13 July 2023},
pages = {292--305},
publisher = {Association for Computational Linguistics},
year = {2023},
url = {https://doi.org/10.18653/v1/2023.bionlp-1.26},
doi = {10.18653/V1/2023.BIONLP-1.26},
timestamp = {Thu, 10 Aug 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/bionlp/KammerBWMS23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bionlp/KarnGPF23,
author = {Sanjeev Kumar Karn and
Rikhiya Ghosh and
Kusuma P and
Oladimeji Farri},
editor = {Dina Demner{-}Fushman and
Sophia Ananiadou and
Kevin Cohen},
title = {shs-nlp at RadSum23: Domain-Adaptive Pre-training of Instruction-tuned
LLMs for Radiology Report Impression Generation},
booktitle = {The 22nd Workshop on Biomedical Natural Language Processing and BioNLP
Shared Tasks, BioNLP@ACL 2023, Toronto, Canada, 13 July 2023},
pages = {550--556},
publisher = {Association for Computational Linguistics},
year = {2023},
url = {https://doi.org/10.18653/v1/2023.bionlp-1.57},
doi = {10.18653/V1/2023.BIONLP-1.57},
timestamp = {Thu, 10 Aug 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/bionlp/KarnGPF23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bionlp/KartchnerRAKM23,
author = {David Kartchner and
Selvi Ramalingam and
Irfan Al{-}Hussaini and
Olivia Kronick and
Cassie S. Mitchell},
editor = {Dina Demner{-}Fushman and
Sophia Ananiadou and
Kevin Cohen},
title = {Zero-Shot Information Extraction for Clinical Meta-Analysis using
Large Language Models},
booktitle = {The 22nd Workshop on Biomedical Natural Language Processing and BioNLP
Shared Tasks, BioNLP@ACL 2023, Toronto, Canada, 13 July 2023},
pages = {396--405},
publisher = {Association for Computational Linguistics},
year = {2023},
url = {https://doi.org/10.18653/v1/2023.bionlp-1.37},
doi = {10.18653/V1/2023.BIONLP-1.37},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/bionlp/KartchnerRAKM23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bionlp/KhettariQC23,
author = {Oumaima El Khettari and
Solen Quiniou and
Samuel Chaffron},
editor = {Dina Demner{-}Fushman and
Sophia Ananiadou and
Kevin Cohen},
title = {Building a Corpus for Biomedical Relation Extraction of Species Mentions},
booktitle = {The 22nd Workshop on Biomedical Natural Language Processing and BioNLP
Shared Tasks, BioNLP@ACL 2023, Toronto, Canada, 13 July 2023},
pages = {248--254},
publisher = {Association for Computational Linguistics},
year = {2023},
url = {https://doi.org/10.18653/v1/2023.bionlp-1.21},
doi = {10.18653/V1/2023.BIONLP-1.21},
timestamp = {Thu, 10 Aug 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/bionlp/KhettariQC23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bionlp/KimK0BKSKYCK23,
author = {Gangwoo Kim and
Hajung Kim and
Lei Ji and
Seongsu Bae and
Chanhwi Kim and
Mujeen Sung and
Hyunjae Kim and
Kun Yan and
Eric Chang and
Jaewoo Kang},
editor = {Dina Demner{-}Fushman and
Sophia Ananiadou and
Kevin Cohen},
title = {{KU-DMIS-MSRA} at RadSum23: Pre-trained Vision-Language Model for
Radiology Report Summarization},
booktitle = {The 22nd Workshop on Biomedical Natural Language Processing and BioNLP
Shared Tasks, BioNLP@ACL 2023, Toronto, Canada, 13 July 2023},
pages = {567--573},
publisher = {Association for Computational Linguistics},
year = {2023},
url = {https://doi.org/10.18653/v1/2023.bionlp-1.59},
doi = {10.18653/V1/2023.BIONLP-1.59},
timestamp = {Thu, 10 Aug 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/bionlp/KimK0BKSKYCK23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bionlp/KimNRFNS0K23,
author = {Sanghwan Kim and
Farhad Nooralahzadeh and
Morteza Rohanian and
Koji Fujimoto and
Mizuho Nishio and
Ryo Sakamoto and
Fabio Rinaldi and
Michael Krauthammer},
editor = {Dina Demner{-}Fushman and
Sophia Ananiadou and
Kevin Cohen},
title = {Boosting Radiology Report Generation by Infusing Comparison Prior},
booktitle = {The 22nd Workshop on Biomedical Natural Language Processing and BioNLP
Shared Tasks, BioNLP@ACL 2023, Toronto, Canada, 13 July 2023},
pages = {50--61},
publisher = {Association for Computational Linguistics},
year = {2023},
url = {https://doi.org/10.18653/v1/2023.bionlp-1.4},
doi = {10.18653/V1/2023.BIONLP-1.4},
timestamp = {Tue, 07 May 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/bionlp/KimNRFNS0K23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bionlp/KolhatkarPGK23,
author = {Gaurav Kolhatkar and
Aditya Paranjape and
Omkar Gokhale and
Dipali Kadam},
editor = {Dina Demner{-}Fushman and
Sophia Ananiadou and
Kevin Cohen},
title = {Team Converge at ProbSum 2023: Abstractive Text Summarization of Patient
Progress Notes},
booktitle = {The 22nd Workshop on Biomedical Natural Language Processing and BioNLP
Shared Tasks, BioNLP@ACL 2023, Toronto, Canada, 13 July 2023},
pages = {510--515},
publisher = {Association for Computational Linguistics},
year = {2023},
url = {https://doi.org/10.18653/v1/2023.bionlp-1.50},
doi = {10.18653/V1/2023.BIONLP-1.50},
timestamp = {Thu, 10 Aug 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/bionlp/KolhatkarPGK23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bionlp/LandesCPHE23,
author = {Paul Landes and
Aaron Chaise and
Kunal Patel and
Sean S. Huang and
Barbara Di Eugenio},
editor = {Dina Demner{-}Fushman and
Sophia Ananiadou and
Kevin Cohen},
title = {Hospital Discharge Summarization Data Provenance},
booktitle = {The 22nd Workshop on Biomedical Natural Language Processing and BioNLP
Shared Tasks, BioNLP@ACL 2023, Toronto, Canada, 13 July 2023},
pages = {439--448},
publisher = {Association for Computational Linguistics},
year = {2023},
url = {https://doi.org/10.18653/v1/2023.bionlp-1.41},
doi = {10.18653/V1/2023.BIONLP-1.41},
timestamp = {Thu, 10 Aug 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/bionlp/LandesCPHE23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bionlp/LiMP23,
author = {Yueling Li and
Sebastian Martschat and
Simone Paolo Ponzetto},
editor = {Dina Demner{-}Fushman and
Sophia Ananiadou and
Kevin Cohen},
title = {Multi-Source (Pre-)Training for Cross-Domain Measurement, Unit and
Context Extraction},
booktitle = {The 22nd Workshop on Biomedical Natural Language Processing and BioNLP
Shared Tasks, BioNLP@ACL 2023, Toronto, Canada, 13 July 2023},
pages = {1--25},
publisher = {Association for Computational Linguistics},
year = {2023},
url = {https://doi.org/10.18653/v1/2023.bionlp-1.1},
doi = {10.18653/V1/2023.BIONLP-1.1},
timestamp = {Mon, 05 Feb 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/bionlp/LiMP23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bionlp/LiWSBNKZB0N23,
author = {Hao Li and
Yuping Wu and
Viktor Schlegel and
Riza Batista{-}Navarro and
Thanh{-}Tung Nguyen and
Abhinav Ramesh Kashyap and
Xiao{-}Jun Zeng and
Daniel Beck and
Stefan Winkler and
Goran Nenadic},
editor = {Dina Demner{-}Fushman and
Sophia Ananiadou and
Kevin Cohen},
title = {Team: {PULSAR} at ProbSum 2023: {PULSAR:} Pre-training with Extracted
Healthcare Terms for Summarising Patients' Problems and Data Augmentation
with Black-box Large Language Models},
booktitle = {The 22nd Workshop on Biomedical Natural Language Processing and BioNLP
Shared Tasks, BioNLP@ACL 2023, Toronto, Canada, 13 July 2023},
pages = {503--509},
publisher = {Association for Computational Linguistics},
year = {2023},
url = {https://doi.org/10.18653/v1/2023.bionlp-1.49},
doi = {10.18653/V1/2023.BIONLP-1.49},
timestamp = {Thu, 17 Oct 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/bionlp/LiWSBNKZB0N23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bionlp/LiuRV23,
author = {Quancheng Liu and
Xiheng Ren and
V. G. Vinod Vydiswaran},
editor = {Dina Demner{-}Fushman and
Sophia Ananiadou and
Kevin Cohen},
title = {{LHS712EE} at BioLaySumm 2023: Using {BART} and {LED} to summarize
biomedical research articles},
booktitle = {The 22nd Workshop on Biomedical Natural Language Processing and BioNLP
Shared Tasks, BioNLP@ACL 2023, Toronto, Canada, 13 July 2023},
pages = {620--624},
publisher = {Association for Computational Linguistics},
year = {2023},
url = {https://doi.org/10.18653/v1/2023.bionlp-1.66},
doi = {10.18653/V1/2023.BIONLP-1.66},
timestamp = {Thu, 10 Aug 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/bionlp/LiuRV23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bionlp/LiuZTZ23,
author = {Ming Liu and
Dan Zhang and
Weicong Tan and
He Zhang},
editor = {Dina Demner{-}Fushman and
Sophia Ananiadou and
Kevin Cohen},
title = {DeakinNLP at ProbSum 2023: Clinical Progress Note Summarization with
Rules and Language ModelsClinical Progress Note Summarization with
Rules and Languague Models},
booktitle = {The 22nd Workshop on Biomedical Natural Language Processing and BioNLP
Shared Tasks, BioNLP@ACL 2023, Toronto, Canada, 13 July 2023},
pages = {491--496},
publisher = {Association for Computational Linguistics},
year = {2023},
url = {https://doi.org/10.18653/v1/2023.bionlp-1.47},
doi = {10.18653/V1/2023.BIONLP-1.47},
timestamp = {Thu, 10 Aug 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/bionlp/LiuZTZ23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bionlp/LiyanageGMS23,
author = {Chandreen Liyanage and
Muskan Garg and
Vijay Mago and
Sunghwan Sohn},
editor = {Dina Demner{-}Fushman and
Sophia Ananiadou and
Kevin Cohen},
title = {Augmenting Reddit Posts to Determine Wellness Dimensions impacting
Mental Health},
booktitle = {The 22nd Workshop on Biomedical Natural Language Processing and BioNLP
Shared Tasks, BioNLP@ACL 2023, Toronto, Canada, 13 July 2023},
pages = {306--312},
publisher = {Association for Computational Linguistics},
year = {2023},
url = {https://doi.org/10.18653/v1/2023.bionlp-1.27},
doi = {10.18653/V1/2023.BIONLP-1.27},
timestamp = {Thu, 10 Aug 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/bionlp/LiyanageGMS23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bionlp/MacharlaMK23,
author = {Sri Macharla and
Ashok Madamanchi and
Nikhilesh Kancharla},
editor = {Dina Demner{-}Fushman and
Sophia Ananiadou and
Kevin Cohen},
title = {nav-nlp at RadSum23: Abstractive Summarization of Radiology Reports
using {BART} Finetuning},
booktitle = {The 22nd Workshop on Biomedical Natural Language Processing and BioNLP
Shared Tasks, BioNLP@ACL 2023, Toronto, Canada, 13 July 2023},
pages = {541--544},
publisher = {Association for Computational Linguistics},
year = {2023},
url = {https://doi.org/10.18653/v1/2023.bionlp-1.55},
doi = {10.18653/V1/2023.BIONLP-1.55},
timestamp = {Thu, 10 Aug 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/bionlp/MacharlaMK23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bionlp/ManakulFLRRG23,
author = {Potsawee Manakul and
Yassir Fathullah and
Adian Liusie and
Vyas Raina and
Vatsal Raina and
Mark J. F. Gales},
editor = {Dina Demner{-}Fushman and
Sophia Ananiadou and
Kevin Cohen},
title = {{CUED} at ProbSum 2023: Hierarchical Ensemble of Summarization Models},
booktitle = {The 22nd Workshop on Biomedical Natural Language Processing and BioNLP
Shared Tasks, BioNLP@ACL 2023, Toronto, Canada, 13 July 2023},
pages = {516--523},
publisher = {Association for Computational Linguistics},
year = {2023},
url = {https://doi.org/10.18653/v1/2023.bionlp-1.51},
doi = {10.18653/V1/2023.BIONLP-1.51},
timestamp = {Thu, 10 Aug 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/bionlp/ManakulFLRRG23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bionlp/MatsubaraMS23,
author = {Takuma Matsubara and
Makoto Miwa and
Yutaka Sasaki},
editor = {Dina Demner{-}Fushman and
Sophia Ananiadou and
Kevin Cohen},
title = {Distantly Supervised Document-Level Biomedical Relation Extraction
with Neighborhood Knowledge Graphs},
booktitle = {The 22nd Workshop on Biomedical Natural Language Processing and BioNLP
Shared Tasks, BioNLP@ACL 2023, Toronto, Canada, 13 July 2023},
pages = {363--368},
publisher = {Association for Computational Linguistics},
year = {2023},
url = {https://doi.org/10.18653/v1/2023.bionlp-1.33},
doi = {10.18653/V1/2023.BIONLP-1.33},
timestamp = {Thu, 10 Aug 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/bionlp/MatsubaraMS23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bionlp/MeoniCR23,
author = {Simon Meoni and
{\'{E}}ric de la Clergerie and
Th{\'{e}}o Ryffel},
editor = {Dina Demner{-}Fushman and
Sophia Ananiadou and
Kevin Cohen},
title = {Large Language Models as Instructors: {A} Study on Multilingual Clinical
Entity Extraction},
booktitle = {The 22nd Workshop on Biomedical Natural Language Processing and BioNLP
Shared Tasks, BioNLP@ACL 2023, Toronto, Canada, 13 July 2023},
pages = {178--190},
publisher = {Association for Computational Linguistics},
year = {2023},
url = {https://doi.org/10.18653/v1/2023.bionlp-1.15},
doi = {10.18653/V1/2023.BIONLP-1.15},
timestamp = {Sun, 06 Oct 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/bionlp/MeoniCR23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bionlp/MillerBDS23,
author = {Timothy A. Miller and
Steven Bethard and
Dmitriy Dligach and
Guergana Savova},
editor = {Dina Demner{-}Fushman and
Sophia Ananiadou and
Kevin Cohen},
title = {End-to-end clinical temporal information extraction with multi-head
attention},
booktitle = {The 22nd Workshop on Biomedical Natural Language Processing and BioNLP
Shared Tasks, BioNLP@ACL 2023, Toronto, Canada, 13 July 2023},
pages = {313--319},
publisher = {Association for Computational Linguistics},
year = {2023},
url = {https://doi.org/10.18653/v1/2023.bionlp-1.28},
doi = {10.18653/V1/2023.BIONLP-1.28},
timestamp = {Sun, 12 Nov 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/bionlp/MillerBDS23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bionlp/MobasherMKG23,
author = {Ghadeer Mobasher and
Wolfgang Mller and
Olga Krebs and
Michael Gertz},
editor = {Dina Demner{-}Fushman and
Sophia Ananiadou and
Kevin Cohen},
title = {WeLT: Improving Biomedical Fine-tuned Pre-trained Language Models
with Cost-sensitive Learning},
booktitle = {The 22nd Workshop on Biomedical Natural Language Processing and BioNLP
Shared Tasks, BioNLP@ACL 2023, Toronto, Canada, 13 July 2023},
pages = {427--438},
publisher = {Association for Computational Linguistics},
year = {2023},
url = {https://doi.org/10.18653/v1/2023.bionlp-1.40},
doi = {10.18653/V1/2023.BIONLP-1.40},
timestamp = {Thu, 10 Aug 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/bionlp/MobasherMKG23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bionlp/NevesSESBB23,
author = {Mariana L. Neves and
Ines Schadock and
Beryl Eusemann and
Gilbert Sch{\"{o}}nfelder and
Bettina Bert and
Daniel Butzke},
editor = {Dina Demner{-}Fushman and
Sophia Ananiadou and
Kevin Cohen},
title = {Is the ranking of PubMed similar articles good enough? An evaluation
of text similarity methods for three datasets},
booktitle = {The 22nd Workshop on Biomedical Natural Language Processing and BioNLP
Shared Tasks, BioNLP@ACL 2023, Toronto, Canada, 13 July 2023},
pages = {133--144},
publisher = {Association for Computational Linguistics},
year = {2023},
url = {https://doi.org/10.18653/v1/2023.bionlp-1.11},
doi = {10.18653/V1/2023.BIONLP-1.11},
timestamp = {Thu, 10 Aug 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/bionlp/NevesSESBB23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bionlp/NicolsonDK23,
author = {Aaron Nicolson and
Jason Dowling and
Bevan Koopman},
editor = {Dina Demner{-}Fushman and
Sophia Ananiadou and
Kevin Cohen},
title = {e-Health {CSIRO} at RadSum23: Adapting a Chest X-Ray Report Generator
to Multimodal Radiology Report Summarisation},
booktitle = {The 22nd Workshop on Biomedical Natural Language Processing and BioNLP
Shared Tasks, BioNLP@ACL 2023, Toronto, Canada, 13 July 2023},
pages = {545--549},
publisher = {Association for Computational Linguistics},
year = {2023},
url = {https://doi.org/10.18653/v1/2023.bionlp-1.56},
doi = {10.18653/V1/2023.BIONLP-1.56},
timestamp = {Thu, 10 Aug 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/bionlp/NicolsonDK23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bionlp/ParkYLLJYA23,
author = {Gilchan Park and
Byung{-}Jun Yoon and
Xihaier Luo and
Vanessa L{\'{o}}pez{-}Marrero and
Patrick R. Johnstone and
Shinjae Yoo and
Francis J. Alexander},
editor = {Dina Demner{-}Fushman and
Sophia Ananiadou and
Kevin Cohen},
title = {Automated Extraction of Molecular Interactions and Pathway Knowledge
using Large Language Model, Galactica: Opportunities and Challenges},
booktitle = {The 22nd Workshop on Biomedical Natural Language Processing and BioNLP
Shared Tasks, BioNLP@ACL 2023, Toronto, Canada, 13 July 2023},
pages = {255--264},
publisher = {Association for Computational Linguistics},
year = {2023},
url = {https://doi.org/10.18653/v1/2023.bionlp-1.22},
doi = {10.18653/V1/2023.BIONLP-1.22},
timestamp = {Sun, 06 Oct 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/bionlp/ParkYLLJYA23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bionlp/PavlovaM23,
author = {Vera Pavlova and
Mohammed Makhlouf},
editor = {Dina Demner{-}Fushman and
Sophia Ananiadou and
Kevin Cohen},
title = {BIOptimus: Pre-training an Optimal Biomedical Language Model with
Curriculum Learning for Named Entity Recognition},
booktitle = {The 22nd Workshop on Biomedical Natural Language Processing and BioNLP
Shared Tasks, BioNLP@ACL 2023, Toronto, Canada, 13 July 2023},
pages = {337--349},
publisher = {Association for Computational Linguistics},
year = {2023},
url = {https://doi.org/10.18653/v1/2023.bionlp-1.31},
doi = {10.18653/V1/2023.BIONLP-1.31},
timestamp = {Thu, 10 Aug 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/bionlp/PavlovaM23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bionlp/PhanTT23,
author = {Phuc Phan and
Tri Tran and
Hai{-}Long Trieu},
editor = {Dina Demner{-}Fushman and
Sophia Ananiadou and
Kevin Cohen},
title = {{VBD-NLP} at BioLaySumm Task 1: Explicit and Implicit Key Information
Selection for Lay Summarization on Biomedical Long Documents},
booktitle = {The 22nd Workshop on Biomedical Natural Language Processing and BioNLP
Shared Tasks, BioNLP@ACL 2023, Toronto, Canada, 13 July 2023},
pages = {574--578},
publisher = {Association for Computational Linguistics},
year = {2023},
url = {https://doi.org/10.18653/v1/2023.bionlp-1.60},
doi = {10.18653/V1/2023.BIONLP-1.60},
timestamp = {Thu, 10 Aug 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/bionlp/PhanTT23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bionlp/PoornashDSS23,
author = {A. S. Poornash and
Atharva Deshmukh and
Archit Sharma and
Sriparna Saha},
editor = {Dina Demner{-}Fushman and
Sophia Ananiadou and
Kevin Cohen},
title = {APTSumm at BioLaySumm Task 1: Biomedical Breakdown, Improving Readability
by Relevancy Based Selection},
booktitle = {The 22nd Workshop on Biomedical Natural Language Processing and BioNLP
Shared Tasks, BioNLP@ACL 2023, Toronto, Canada, 13 July 2023},
pages = {579--585},
publisher = {Association for Computational Linguistics},
year = {2023},
url = {https://doi.org/10.18653/v1/2023.bionlp-1.61},
doi = {10.18653/V1/2023.BIONLP-1.61},
timestamp = {Mon, 30 Oct 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/bionlp/PoornashDSS23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bionlp/ReddyRSS23,
author = {Venkat praneeth Reddy and
Pinnapu Reddy Harshavardhan Reddy and
Karanam Sai Sumedh and
Raksha Sharma},
editor = {Dina Demner{-}Fushman and
Sophia Ananiadou and
Kevin Cohen},
title = {{IITR} at BioLaySumm Task 1: Lay Summarization of BioMedical articles
using Transformers},
booktitle = {The 22nd Workshop on Biomedical Natural Language Processing and BioNLP
Shared Tasks, BioNLP@ACL 2023, Toronto, Canada, 13 July 2023},
pages = {625--628},
publisher = {Association for Computational Linguistics},
year = {2023},
url = {https://doi.org/10.18653/v1/2023.bionlp-1.67},
doi = {10.18653/V1/2023.BIONLP-1.67},
timestamp = {Thu, 10 Aug 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/bionlp/ReddyRSS23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bionlp/RemyDD23,
author = {Fran{\c{c}}ois Remy and
Kris Demuynck and
Thomas Demeester},
editor = {Dina Demner{-}Fushman and
Sophia Ananiadou and
Kevin Cohen},
title = {Automatic Glossary of Clinical Terminology: a Large-Scale Dictionary
of Biomedical Definitions Generated from Ontological Knowledge},
booktitle = {The 22nd Workshop on Biomedical Natural Language Processing and BioNLP
Shared Tasks, BioNLP@ACL 2023, Toronto, Canada, 13 July 2023},
pages = {265--272},
publisher = {Association for Computational Linguistics},
year = {2023},
url = {https://doi.org/10.18653/v1/2023.bionlp-1.23},
doi = {10.18653/V1/2023.BIONLP-1.23},
timestamp = {Thu, 10 Aug 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/bionlp/RemyDD23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bionlp/RohanianJNKGKGM23,
author = {Omid Rohanian and
Hannah Jauncey and
Mohammadmahdi Nouriborji and
Vinod Kumar and
Bronner P. Gon{\c{c}}alves and
Christiana Kartsonaki and
Isaric Clinical Characterisation Group and
Laura Merson and
David A. Clifton},
editor = {Dina Demner{-}Fushman and
Sophia Ananiadou and
Kevin Cohen},
title = {Using Bottleneck Adapters to Identify Cancer in Clinical Notes under
Low-Resource Constraints},
booktitle = {The 22nd Workshop on Biomedical Natural Language Processing and BioNLP
Shared Tasks, BioNLP@ACL 2023, Toronto, Canada, 13 July 2023},
pages = {62--78},
publisher = {Association for Computational Linguistics},
year = {2023},
url = {https://doi.org/10.18653/v1/2023.bionlp-1.5},
doi = {10.18653/V1/2023.BIONLP-1.5},
timestamp = {Thu, 10 Aug 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/bionlp/RohanianJNKGKGM23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bionlp/Rosati23,
author = {Domenic Rosati},
editor = {Dina Demner{-}Fushman and
Sophia Ananiadou and
Kevin Cohen},
title = {{GRASUM} at BioLaySumm Task 1: Background Knowledge Grounding for
Readable, Relevant, and Factual Biomedical Lay Summaries},
booktitle = {The 22nd Workshop on Biomedical Natural Language Processing and BioNLP
Shared Tasks, BioNLP@ACL 2023, Toronto, Canada, 13 July 2023},
pages = {483--490},
publisher = {Association for Computational Linguistics},
year = {2023},
url = {https://doi.org/10.18653/v1/2023.bionlp-1.46},
doi = {10.18653/V1/2023.BIONLP-1.46},
timestamp = {Thu, 10 Aug 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/bionlp/Rosati23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bionlp/RoyM23,
author = {Sudipta Singha Roy and
Robert E. Mercer},
editor = {Dina Demner{-}Fushman and
Sophia Ananiadou and
Kevin Cohen},
title = {Extracting Drug-Drug and Protein-Protein Interactions from Text using
a Continuous Update of Tree-Transformers},
booktitle = {The 22nd Workshop on Biomedical Natural Language Processing and BioNLP
Shared Tasks, BioNLP@ACL 2023, Toronto, Canada, 13 July 2023},
pages = {280--291},
publisher = {Association for Computational Linguistics},
year = {2023},
url = {https://doi.org/10.18653/v1/2023.bionlp-1.25},
doi = {10.18653/V1/2023.BIONLP-1.25},
timestamp = {Thu, 10 Aug 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/bionlp/RoyM23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bionlp/SarroutiTR23,
author = {Mourad Sarrouti and
Carson Tao and
Yoann Mamy Randriamihaja},
editor = {Dina Demner{-}Fushman and
Sophia Ananiadou and
Kevin Cohen},
title = {Exploring Drug Switching in Patients: {A} Deep Learning-based Approach
to Extract Drug Changes and Reasons from Social Media},
booktitle = {The 22nd Workshop on Biomedical Natural Language Processing and BioNLP
Shared Tasks, BioNLP@ACL 2023, Toronto, Canada, 13 July 2023},
pages = {127--132},
publisher = {Association for Computational Linguistics},
year = {2023},
url = {https://doi.org/10.18653/v1/2023.bionlp-1.10},
doi = {10.18653/V1/2023.BIONLP-1.10},
timestamp = {Thu, 10 Aug 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/bionlp/SarroutiTR23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bionlp/SimDRK23,
author = {Mong Yuan Sim and
Xiang Dai and
Maciej Rybinski and
Sarvnaz Karimi},
editor = {Dina Demner{-}Fushman and
Sophia Ananiadou and
Kevin Cohen},
title = {{CSIRO} Data61 Team at BioLaySumm Task 1: Lay Summarisation of Biomedical
Research Articles Using Generative Models},
booktitle = {The 22nd Workshop on Biomedical Natural Language Processing and BioNLP
Shared Tasks, BioNLP@ACL 2023, Toronto, Canada, 13 July 2023},
pages = {629--635},
publisher = {Association for Computational Linguistics},
year = {2023},
url = {https://doi.org/10.18653/v1/2023.bionlp-1.68},
doi = {10.18653/V1/2023.BIONLP-1.68},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/bionlp/SimDRK23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bionlp/SureshTGGGKMBK23,
author = {Shilpa Suresh and
Nazgol Tavabi and
Shahriar Golchin and
Leah Gilreath and
Rafael Garcia{-}Andujar and
Alexander Kim and
Joseph Murray and
Blake Bacevich and
Ata M. Kiapour},
editor = {Dina Demner{-}Fushman and
Sophia Ananiadou and
Kevin Cohen},
title = {Intermediate Domain Finetuning for Weakly Supervised Domain-adaptive
Clinical {NER}},
booktitle = {The 22nd Workshop on Biomedical Natural Language Processing and BioNLP
Shared Tasks, BioNLP@ACL 2023, Toronto, Canada, 13 July 2023},
pages = {320--325},
publisher = {Association for Computational Linguistics},
year = {2023},
url = {https://doi.org/10.18653/v1/2023.bionlp-1.29},
doi = {10.18653/V1/2023.BIONLP-1.29},
timestamp = {Wed, 27 Dec 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/bionlp/SureshTGGGKMBK23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bionlp/SusterBV23,
author = {Simon Suster and
Timothy Baldwin and
Karin Verspoor},
editor = {Dina Demner{-}Fushman and
Sophia Ananiadou and
Kevin Cohen},
title = {Promoting Fairness in Classification of Quality of Medical Evidence},
booktitle = {The 22nd Workshop on Biomedical Natural Language Processing and BioNLP
Shared Tasks, BioNLP@ACL 2023, Toronto, Canada, 13 July 2023},
pages = {413--426},
publisher = {Association for Computational Linguistics},
year = {2023},
url = {https://doi.org/10.18653/v1/2023.bionlp-1.39},
doi = {10.18653/V1/2023.BIONLP-1.39},
timestamp = {Mon, 05 Feb 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/bionlp/SusterBV23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bionlp/TorreroSE23,
author = {Neil Torrero and
Gerard Sant and
Carlos Escolano},
editor = {Dina Demner{-}Fushman and
Sophia Ananiadou and
Kevin Cohen},
title = {{TALP-UPC} at ProbSum 2023: Fine-tuning and Data Augmentation Strategies
for {NER}},
booktitle = {The 22nd Workshop on Biomedical Natural Language Processing and BioNLP
Shared Tasks, BioNLP@ACL 2023, Toronto, Canada, 13 July 2023},
pages = {497--502},
publisher = {Association for Computational Linguistics},
year = {2023},
url = {https://doi.org/10.18653/v1/2023.bionlp-1.48},
doi = {10.18653/V1/2023.BIONLP-1.48},
timestamp = {Thu, 10 Aug 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/bionlp/TorreroSE23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bionlp/TurbittBA23,
author = {Oisn Turbitt and
Robert Bevan and
Mouhamad Aboshokor},
editor = {Dina Demner{-}Fushman and
Sophia Ananiadou and
Kevin Cohen},
title = {{MDC} at BioLaySumm Task 1: Evaluating {GPT} Models for Biomedical
Lay Summarization},
booktitle = {The 22nd Workshop on Biomedical Natural Language Processing and BioNLP
Shared Tasks, BioNLP@ACL 2023, Toronto, Canada, 13 July 2023},
pages = {611--619},
publisher = {Association for Computational Linguistics},
year = {2023},
url = {https://doi.org/10.18653/v1/2023.bionlp-1.65},
doi = {10.18653/V1/2023.BIONLP-1.65},
timestamp = {Thu, 10 Aug 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/bionlp/TurbittBA23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bionlp/VeenUAPBPCDCLCP23,
author = {Dave Van Veen and
Cara Van Uden and
Maayane Attias and
Anuj Pareek and
Christian Bluethgen and
Malgorzata Polacin and
Wah Chiu and
Jean{-}Benoit Delbrouck and
Juan Manuel Zambrano Chaves and
Curtis P. Langlotz and
Akshay Chaudhari and
John M. Pauly},
editor = {Dina Demner{-}Fushman and
Sophia Ananiadou and
Kevin Cohen},
title = {RadAdapt: Radiology Report Summarization via Lightweight Domain Adaptation
of Large Language Models},
booktitle = {The 22nd Workshop on Biomedical Natural Language Processing and BioNLP
Shared Tasks, BioNLP@ACL 2023, Toronto, Canada, 13 July 2023},
pages = {449--460},
publisher = {Association for Computational Linguistics},
year = {2023},
url = {https://doi.org/10.18653/v1/2023.bionlp-1.42},
doi = {10.18653/V1/2023.BIONLP-1.42},
timestamp = {Thu, 10 Aug 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/bionlp/VeenUAPBPCDCLCP23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bionlp/VermaBT23,
author = {Harsh Verma and
Sabine Bergler and
Narjesossadat Tahaei},
editor = {Dina Demner{-}Fushman and
Sophia Ananiadou and
Kevin Cohen},
title = {Comparing and combining some popular {NER} approaches on Biomedical
tasks},
booktitle = {The 22nd Workshop on Biomedical Natural Language Processing and BioNLP
Shared Tasks, BioNLP@ACL 2023, Toronto, Canada, 13 July 2023},
pages = {273--279},
publisher = {Association for Computational Linguistics},
year = {2023},
url = {https://doi.org/10.18653/v1/2023.bionlp-1.24},
doi = {10.18653/V1/2023.BIONLP-1.24},
timestamp = {Thu, 10 Aug 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/bionlp/VermaBT23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bionlp/WajsburtT23,
author = {Perceval Wajsb{\"{u}}rt and
Xavier Tannier},
editor = {Dina Demner{-}Fushman and
Sophia Ananiadou and
Kevin Cohen},
title = {An end-to-end neural model based on cliques and scopes for frame extraction
in long breast radiology reports},
booktitle = {The 22nd Workshop on Biomedical Natural Language Processing and BioNLP
Shared Tasks, BioNLP@ACL 2023, Toronto, Canada, 13 July 2023},
pages = {156--170},
publisher = {Association for Computational Linguistics},
year = {2023},
url = {https://doi.org/10.18653/v1/2023.bionlp-1.13},
doi = {10.18653/V1/2023.BIONLP-1.13},
timestamp = {Thu, 10 Aug 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/bionlp/WajsburtT23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bionlp/WangZR23,
author = {Tongnian Wang and
Xingmeng Zhao and
Anthony Rios},
editor = {Dina Demner{-}Fushman and
Sophia Ananiadou and
Kevin Cohen},
title = {{UTSA-NLP} at RadSum23: Multi-modal Retrieval-Based Chest X-Ray Report
Summarization},
booktitle = {The 22nd Workshop on Biomedical Natural Language Processing and BioNLP
Shared Tasks, BioNLP@ACL 2023, Toronto, Canada, 13 July 2023},
pages = {557--566},
publisher = {Association for Computational Linguistics},
year = {2023},
url = {https://doi.org/10.18653/v1/2023.bionlp-1.58},
doi = {10.18653/V1/2023.BIONLP-1.58},
timestamp = {Sun, 06 Oct 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/bionlp/WangZR23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bionlp/WhettenK23,
author = {Ryan Whetten and
Casey Kennington},
editor = {Dina Demner{-}Fushman and
Sophia Ananiadou and
Kevin Cohen},
title = {Evaluating and Improving Automatic Speech Recognition using Severity},
booktitle = {The 22nd Workshop on Biomedical Natural Language Processing and BioNLP
Shared Tasks, BioNLP@ACL 2023, Toronto, Canada, 13 July 2023},
pages = {79--91},
publisher = {Association for Computational Linguistics},
year = {2023},
url = {https://doi.org/10.18653/v1/2023.bionlp-1.6},
doi = {10.18653/V1/2023.BIONLP-1.6},
timestamp = {Thu, 10 Aug 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/bionlp/WhettenK23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bionlp/WuLK23,
author = {Yu{-}Hsuan Wu and
Ying{-}Jia Lin and
Hung{-}Yu Kao},
editor = {Dina Demner{-}Fushman and
Sophia Ananiadou and
Kevin Cohen},
title = {IKM{\_}Lab at BioLaySumm Task 1: Longformer-based Prompt Tuning for
Biomedical Lay Summary Generation},
booktitle = {The 22nd Workshop on Biomedical Natural Language Processing and BioNLP
Shared Tasks, BioNLP@ACL 2023, Toronto, Canada, 13 July 2023},
pages = {602--610},
publisher = {Association for Computational Linguistics},
year = {2023},
url = {https://doi.org/10.18653/v1/2023.bionlp-1.64},
doi = {10.18653/V1/2023.BIONLP-1.64},
timestamp = {Thu, 10 Aug 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/bionlp/WuLK23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bionlp/WuSHW23,
author = {Jinge Wu and
Daqian Shi and
Abul Hasan and
Honghan Wu},
editor = {Dina Demner{-}Fushman and
Sophia Ananiadou and
Kevin Cohen},
title = {KnowLab at RadSum23: comparing pre-trained language models in radiology
report summarization},
booktitle = {The 22nd Workshop on Biomedical Natural Language Processing and BioNLP
Shared Tasks, BioNLP@ACL 2023, Toronto, Canada, 13 July 2023},
pages = {535--540},
publisher = {Association for Computational Linguistics},
year = {2023},
url = {https://doi.org/10.18653/v1/2023.bionlp-1.54},
doi = {10.18653/V1/2023.BIONLP-1.54},
timestamp = {Thu, 10 Aug 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/bionlp/WuSHW23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bionlp/X23,
editor = {Dina Demner{-}Fushman and
Sophia Ananiadou and
Kevin Cohen},
title = {Frontmatter},
booktitle = {The 22nd Workshop on Biomedical Natural Language Processing and BioNLP
Shared Tasks, BioNLP@ACL 2023, Toronto, Canada, 13 July 2023},
publisher = {Association for Computational Linguistics},
year = {2023},
url = {https://aclanthology.org/2023.bionlp-1.0},
timestamp = {Wed, 12 Jul 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/bionlp/X23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bionlp/YamadaMS23,
author = {Koshi Yamada and
Makoto Miwa and
Yutaka Sasaki},
editor = {Dina Demner{-}Fushman and
Sophia Ananiadou and
Kevin Cohen},
title = {Biomedical Relation Extraction with Entity Type Markers and Relation-specific
Question Answering},
booktitle = {The 22nd Workshop on Biomedical Natural Language Processing and BioNLP
Shared Tasks, BioNLP@ACL 2023, Toronto, Canada, 13 July 2023},
pages = {377--384},
publisher = {Association for Computational Linguistics},
year = {2023},
url = {https://doi.org/10.18653/v1/2023.bionlp-1.35},
doi = {10.18653/V1/2023.BIONLP-1.35},
timestamp = {Thu, 10 Aug 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/bionlp/YamadaMS23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bionlp/YanoMA23,
author = {Ken Yano and
Makoto Miwa and
Sophia Ananiadou},
editor = {Dina Demner{-}Fushman and
Sophia Ananiadou and
Kevin Cohen},
title = {{DISTANT:} Distantly Supervised Entity Span Detection and Classification},
booktitle = {The 22nd Workshop on Biomedical Natural Language Processing and BioNLP
Shared Tasks, BioNLP@ACL 2023, Toronto, Canada, 13 July 2023},
pages = {171--177},
publisher = {Association for Computational Linguistics},
year = {2023},
url = {https://doi.org/10.18653/v1/2023.bionlp-1.14},
doi = {10.18653/V1/2023.BIONLP-1.14},
timestamp = {Thu, 10 Aug 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/bionlp/YanoMA23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bionlp/YuanL023,
author = {Hongyi Yuan and
Keming Lu and
Zheng Yuan},
editor = {Dina Demner{-}Fushman and
Sophia Ananiadou and
Kevin Cohen},
title = {Exploring Partial Knowledge Base Inference in Biomedical Entity Linking},
booktitle = {The 22nd Workshop on Biomedical Natural Language Processing and BioNLP
Shared Tasks, BioNLP@ACL 2023, Toronto, Canada, 13 July 2023},
pages = {37--49},
publisher = {Association for Computational Linguistics},
year = {2023},
url = {https://doi.org/10.18653/v1/2023.bionlp-1.3},
doi = {10.18653/V1/2023.BIONLP-1.3},
timestamp = {Thu, 10 Aug 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/bionlp/YuanL023.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bionlp/YuanXA23,
author = {Chenhan Yuan and
Qianqian Xie and
Sophia Ananiadou},
editor = {Dina Demner{-}Fushman and
Sophia Ananiadou and
Kevin Cohen},
title = {Zero-shot Temporal Relation Extraction with ChatGPT},
booktitle = {The 22nd Workshop on Biomedical Natural Language Processing and BioNLP
Shared Tasks, BioNLP@ACL 2023, Toronto, Canada, 13 July 2023},
pages = {92--102},
publisher = {Association for Computational Linguistics},
year = {2023},
url = {https://doi.org/10.18653/v1/2023.bionlp-1.7},
doi = {10.18653/V1/2023.BIONLP-1.7},
timestamp = {Thu, 10 Aug 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/bionlp/YuanXA23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bionlp/ZanellaT23,
author = {Laura Zanella and
Yannick Toussaint},
editor = {Dina Demner{-}Fushman and
Sophia Ananiadou and
Kevin Cohen},
title = {How Much do Knowledge Graphs Impact Transformer Models for Extracting
Biomedical Events?},
booktitle = {The 22nd Workshop on Biomedical Natural Language Processing and BioNLP
Shared Tasks, BioNLP@ACL 2023, Toronto, Canada, 13 July 2023},
pages = {145--155},
publisher = {Association for Computational Linguistics},
year = {2023},
url = {https://doi.org/10.18653/v1/2023.bionlp-1.12},
doi = {10.18653/V1/2023.BIONLP-1.12},
timestamp = {Thu, 10 Aug 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/bionlp/ZanellaT23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bionlp/ZhangYA23,
author = {Tianlin Zhang and
Kailai Yang and
Sophia Ananiadou},
editor = {Dina Demner{-}Fushman and
Sophia Ananiadou and
Kevin Cohen},
title = {Sentiment-guided Transformer with Severity-aware Contrastive Learning
for Depression Detection on Social Media},
booktitle = {The 22nd Workshop on Biomedical Natural Language Processing and BioNLP
Shared Tasks, BioNLP@ACL 2023, Toronto, Canada, 13 July 2023},
pages = {114--126},
publisher = {Association for Computational Linguistics},
year = {2023},
url = {https://doi.org/10.18653/v1/2023.bionlp-1.9},
doi = {10.18653/V1/2023.BIONLP-1.9},
timestamp = {Sun, 12 Nov 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/bionlp/ZhangYA23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bionlp/ZouDBTK23,
author = {Skyler Zou and
Xiang Dai and
Grant Brinkworth and
Pennie Taylor and
Sarvnaz Karimi},
editor = {Dina Demner{-}Fushman and
Sophia Ananiadou and
Kevin Cohen},
title = {Can Social Media Inform Dietary Approaches for Health Management?
{A} Dataset and Benchmark for Low-Carb Diet},
booktitle = {The 22nd Workshop on Biomedical Natural Language Processing and BioNLP
Shared Tasks, BioNLP@ACL 2023, Toronto, Canada, 13 July 2023},
pages = {406--412},
publisher = {Association for Computational Linguistics},
year = {2023},
url = {https://doi.org/10.18653/v1/2023.bionlp-1.38},
doi = {10.18653/V1/2023.BIONLP-1.38},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/bionlp/ZouDBTK23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@proceedings{DBLP:conf/bionlp/2023,
editor = {Dina Demner{-}Fushman and
Sophia Ananiadou and
Kevin Cohen},
title = {The 22nd Workshop on Biomedical Natural Language Processing and BioNLP
Shared Tasks, BioNLP@ACL 2023, Toronto, Canada, 13 July 2023},
publisher = {Association for Computational Linguistics},
year = {2023},
url = {https://aclanthology.org/volumes/2023.bionlp-1/},
timestamp = {Wed, 12 Jul 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/bionlp/2023.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
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