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@inproceedings{DBLP:conf/bcb/AgarwalONZC11,
  author       = {Alpna Agarwal and
                  Eron Oronsaye and
                  Arthur Nadas and
                  Susan Zolla{-}Pazner and
                  Timothy Cardozo},
  editor       = {Robert Grossman and
                  Andrey Rzhetsky and
                  Sun Kim and
                  Wei Wang},
  title        = {{CCR5/CXCR4} discriminating sites in the {HIV-1} gp120 core},
  booktitle    = {{ACM} International Conference on Bioinformatics, Computational Biology
                  and Biomedicine, BCB' 11, Chicago, IL, {USA} - July 31 - August 03,
                  2011},
  pages        = {519--521},
  publisher    = {{ACM}},
  year         = {2011},
  url          = {https://doi.org/10.1145/2147805.2147888},
  doi          = {10.1145/2147805.2147888},
  timestamp    = {Thu, 14 Oct 2021 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/conf/bcb/AgarwalONZC11.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bcb/AlaydieRF11,
  author       = {Noor Alaydie and
                  Chandan K. Reddy and
                  Farshad Fotouhi},
  editor       = {Robert Grossman and
                  Andrey Rzhetsky and
                  Sun Kim and
                  Wei Wang},
  title        = {A Bayesian integration model for improved gene functional inference
                  from heterogeneous data sources},
  booktitle    = {{ACM} International Conference on Bioinformatics, Computational Biology
                  and Biomedicine, BCB' 11, Chicago, IL, {USA} - July 31 - August 03,
                  2011},
  pages        = {376--380},
  publisher    = {{ACM}},
  year         = {2011},
  url          = {https://doi.org/10.1145/2147805.2147854},
  doi          = {10.1145/2147805.2147854},
  timestamp    = {Sat, 24 Nov 2018 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/conf/bcb/AlaydieRF11.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bcb/AljawadSLL11,
  author       = {Osama Aljawad and
                  Yanni Sun and
                  Alex Liu and
                  Jikai Lei},
  editor       = {Robert Grossman and
                  Andrey Rzhetsky and
                  Sun Kim and
                  Wei Wang},
  title        = {NcRNA homology search using Hamming distance seeds},
  booktitle    = {{ACM} International Conference on Bioinformatics, Computational Biology
                  and Biomedicine, BCB' 11, Chicago, IL, {USA} - July 31 - August 03,
                  2011},
  pages        = {209--217},
  publisher    = {{ACM}},
  year         = {2011},
  url          = {https://doi.org/10.1145/2147805.2147828},
  doi          = {10.1145/2147805.2147828},
  timestamp    = {Fri, 09 Apr 2021 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/conf/bcb/AljawadSLL11.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bcb/AminianSHOVB11,
  author       = {Minoo Aminian and
                  Amina Shabbeer and
                  Kane Hadley and
                  Cagri Ozcaglar and
                  Scott L. Vandenberg and
                  Kristin P. Bennett},
  editor       = {Robert Grossman and
                  Andrey Rzhetsky and
                  Sun Kim and
                  Wei Wang},
  title        = {Knowledge-based Bayesian network for the classification of \emph{Mycobacterium
                  tuberculosis} complex sublineages},
  booktitle    = {{ACM} International Conference on Bioinformatics, Computational Biology
                  and Biomedicine, BCB' 11, Chicago, IL, {USA} - July 31 - August 03,
                  2011},
  pages        = {201--208},
  publisher    = {{ACM}},
  year         = {2011},
  url          = {https://doi.org/10.1145/2147805.2147827},
  doi          = {10.1145/2147805.2147827},
  timestamp    = {Tue, 06 Nov 2018 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/conf/bcb/AminianSHOVB11.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bcb/AnLOSM11,
  author       = {Li An and
                  Haibin Ling and
                  Zoran Obradovic and
                  Desmond J. Smith and
                  Vasileios Megalooikonomou},
  editor       = {Robert Grossman and
                  Andrey Rzhetsky and
                  Sun Kim and
                  Wei Wang},
  title        = {Identifying pair-wise gene functional similarity by multiplex gene
                  expression maps and supervised learning},
  booktitle    = {{ACM} International Conference on Bioinformatics, Computational Biology
                  and Biomedicine, BCB' 11, Chicago, IL, {USA} - July 31 - August 03,
                  2011},
  pages        = {182--190},
  publisher    = {{ACM}},
  year         = {2011},
  url          = {https://doi.org/10.1145/2147805.2147825},
  doi          = {10.1145/2147805.2147825},
  timestamp    = {Tue, 06 Nov 2018 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/conf/bcb/AnLOSM11.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bcb/AtzeniPT11,
  author       = {Paolo Atzeni and
                  Fabio Polticelli and
                  Daniele Toti},
  editor       = {Robert Grossman and
                  Andrey Rzhetsky and
                  Sun Kim and
                  Wei Wang},
  title        = {Experimentation of an automatic resolution method for protein abbreviations
                  in full-text papers},
  booktitle    = {{ACM} International Conference on Bioinformatics, Computational Biology
                  and Biomedicine, BCB' 11, Chicago, IL, {USA} - July 31 - August 03,
                  2011},
  pages        = {465--467},
  publisher    = {{ACM}},
  year         = {2011},
  url          = {https://doi.org/10.1145/2147805.2147871},
  doi          = {10.1145/2147805.2147871},
  timestamp    = {Tue, 06 Nov 2018 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/conf/bcb/AtzeniPT11.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bcb/BahirwaniC11,
  author       = {Vishal Bahirwani and
                  Doina Caragea},
  editor       = {Robert Grossman and
                  Andrey Rzhetsky and
                  Sun Kim and
                  Wei Wang},
  title        = {Study on regulatory motifs in \emph{Arabidopsis thaliana}},
  booktitle    = {{ACM} International Conference on Bioinformatics, Computational Biology
                  and Biomedicine, BCB' 11, Chicago, IL, {USA} - July 31 - August 03,
                  2011},
  pages        = {553--555},
  publisher    = {{ACM}},
  year         = {2011},
  url          = {https://doi.org/10.1145/2147805.2147898},
  doi          = {10.1145/2147805.2147898},
  timestamp    = {Sun, 25 Jul 2021 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/conf/bcb/BahirwaniC11.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bcb/BaudetD11,
  author       = {Christian Baudet and
                  Zanoni Dias},
  editor       = {Robert Grossman and
                  Andrey Rzhetsky and
                  Sun Kim and
                  Wei Wang},
  title        = {Partial enumeration of solutions traces for the problem of sorting
                  by signed reversals},
  booktitle    = {{ACM} International Conference on Bioinformatics, Computational Biology
                  and Biomedicine, BCB' 11, Chicago, IL, {USA} - July 31 - August 03,
                  2011},
  pages        = {505--507},
  publisher    = {{ACM}},
  year         = {2011},
  url          = {https://doi.org/10.1145/2147805.2147884},
  doi          = {10.1145/2147805.2147884},
  timestamp    = {Tue, 06 Nov 2018 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/conf/bcb/BaudetD11.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bcb/BellZN11,
  author       = {Lindsey Bell and
                  Jinfeng Zhang and
                  Xufeng Niu},
  editor       = {Robert Grossman and
                  Andrey Rzhetsky and
                  Sun Kim and
                  Wei Wang},
  title        = {Mixture of logistic models and an ensemble approach for protein-protein
                  interaction extraction},
  booktitle    = {{ACM} International Conference on Bioinformatics, Computational Biology
                  and Biomedicine, BCB' 11, Chicago, IL, {USA} - July 31 - August 03,
                  2011},
  pages        = {371--375},
  publisher    = {{ACM}},
  year         = {2011},
  url          = {https://doi.org/10.1145/2147805.2147853},
  doi          = {10.1145/2147805.2147853},
  timestamp    = {Tue, 06 Nov 2018 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/conf/bcb/BellZN11.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bcb/BlaylockBAJ11,
  author       = {Nate Blaylock and
                  William de Beaumont and
                  James F. Allen and
                  Hyuckchul Jung},
  editor       = {Robert Grossman and
                  Andrey Rzhetsky and
                  Sun Kim and
                  Wei Wang},
  title        = {Towards an OWL-based framework for extracting information from clinical
                  texts},
  booktitle    = {{ACM} International Conference on Bioinformatics, Computational Biology
                  and Biomedicine, BCB' 11, Chicago, IL, {USA} - July 31 - August 03,
                  2011},
  pages        = {636--640},
  publisher    = {{ACM}},
  year         = {2011},
  url          = {https://doi.org/10.1145/2147805.2147914},
  doi          = {10.1145/2147805.2147914},
  timestamp    = {Tue, 06 Nov 2018 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/conf/bcb/BlaylockBAJ11.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bcb/Bravo-SalgadoBM11,
  author       = {Angel Bravo{-}Salgado and
                  Jessica Beckham and
                  Armin R. Mikler},
  editor       = {Robert Grossman and
                  Andrey Rzhetsky and
                  Sun Kim and
                  Wei Wang},
  title        = {Modeling malaria: stretch-delay effect of temperature in the sporogonic
                  cycle and disease dynamics},
  booktitle    = {{ACM} International Conference on Bioinformatics, Computational Biology
                  and Biomedicine, BCB' 11, Chicago, IL, {USA} - July 31 - August 03,
                  2011},
  pages        = {528--530},
  publisher    = {{ACM}},
  year         = {2011},
  url          = {https://doi.org/10.1145/2147805.2147891},
  doi          = {10.1145/2147805.2147891},
  timestamp    = {Tue, 06 Nov 2018 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/conf/bcb/Bravo-SalgadoBM11.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bcb/CakmakQCO11,
  author       = {Ali Cakmak and
                  Xinjian Qi and
                  A. Erc{\"{u}}ment {\c{C}}i{\c{c}}ek and
                  Gultekin {\"{O}}zsoyoglu},
  editor       = {Robert Grossman and
                  Andrey Rzhetsky and
                  Sun Kim and
                  Wei Wang},
  title        = {Computational interpretation of metabolomics measurements: steady-state
                  metabolic network dynamics analysis},
  booktitle    = {{ACM} International Conference on Bioinformatics, Computational Biology
                  and Biomedicine, BCB' 11, Chicago, IL, {USA} - July 31 - August 03,
                  2011},
  pages        = {387--392},
  publisher    = {{ACM}},
  year         = {2011},
  url          = {https://doi.org/10.1145/2147805.2147856},
  doi          = {10.1145/2147805.2147856},
  timestamp    = {Fri, 11 Feb 2022 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/conf/bcb/CakmakQCO11.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bcb/Caoili11,
  author       = {Salvador Eugenio C. Caoili},
  editor       = {Robert Grossman and
                  Andrey Rzhetsky and
                  Sun Kim and
                  Wei Wang},
  title        = {Affinity limits in B-cell epitope prediction for immunity mediated
                  by antipeptide antibodies},
  booktitle    = {{ACM} International Conference on Bioinformatics, Computational Biology
                  and Biomedicine, BCB' 11, Chicago, IL, {USA} - July 31 - August 03,
                  2011},
  pages        = {569--578},
  publisher    = {{ACM}},
  year         = {2011},
  url          = {https://doi.org/10.1145/2147805.2147903},
  doi          = {10.1145/2147805.2147903},
  timestamp    = {Tue, 06 Nov 2018 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/conf/bcb/Caoili11.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bcb/CapirosoEVD11,
  author       = {Maragaille R. Capiroso and
                  Marla A. Endriga and
                  Valerie Diane V. Valeriano and
                  Custer C. Deocaris},
  editor       = {Robert Grossman and
                  Andrey Rzhetsky and
                  Sun Kim and
                  Wei Wang},
  title        = {A molecular systems analysis of {HOX} {PPI} networks in hematopoiesis
                  and leukemogenesis},
  booktitle    = {{ACM} International Conference on Bioinformatics, Computational Biology
                  and Biomedicine, BCB' 11, Chicago, IL, {USA} - July 31 - August 03,
                  2011},
  pages        = {525--527},
  publisher    = {{ACM}},
  year         = {2011},
  url          = {https://doi.org/10.1145/2147805.2147890},
  doi          = {10.1145/2147805.2147890},
  timestamp    = {Tue, 06 Nov 2018 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/conf/bcb/CapirosoEVD11.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bcb/ChenL11,
  author       = {Yixuan Chen and
                  Jing Li},
  editor       = {Robert Grossman and
                  Andrey Rzhetsky and
                  Sun Kim and
                  Wei Wang},
  title        = {Generation of synthetic data in evaluating interactions for association
                  studies},
  booktitle    = {{ACM} International Conference on Bioinformatics, Computational Biology
                  and Biomedicine, BCB' 11, Chicago, IL, {USA} - July 31 - August 03,
                  2011},
  pages        = {325--329},
  publisher    = {{ACM}},
  year         = {2011},
  url          = {https://doi.org/10.1145/2147805.2147844},
  doi          = {10.1145/2147805.2147844},
  timestamp    = {Fri, 19 Jun 2020 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/conf/bcb/ChenL11.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bcb/ChenL11a,
  author       = {Ling Chen and
                  Wei Liu},
  editor       = {Robert Grossman and
                  Andrey Rzhetsky and
                  Sun Kim and
                  Wei Wang},
  title        = {An effective approach for mining frequent patterns in multiple biological
                  sequences},
  booktitle    = {{ACM} International Conference on Bioinformatics, Computational Biology
                  and Biomedicine, BCB' 11, Chicago, IL, {USA} - July 31 - August 03,
                  2011},
  pages        = {481--483},
  publisher    = {{ACM}},
  year         = {2011},
  url          = {https://doi.org/10.1145/2147805.2147876},
  doi          = {10.1145/2147805.2147876},
  timestamp    = {Tue, 06 Nov 2018 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/conf/bcb/ChenL11a.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bcb/ChengOG11,
  author       = {Qiong Cheng and
                  Mitsunori Ogihara and
                  Vineet Gupta},
  editor       = {Robert Grossman and
                  Andrey Rzhetsky and
                  Sun Kim and
                  Wei Wang},
  title        = {Inferring conflict-sensitive phosphorylation dynamics},
  booktitle    = {{ACM} International Conference on Bioinformatics, Computational Biology
                  and Biomedicine, BCB' 11, Chicago, IL, {USA} - July 31 - August 03,
                  2011},
  pages        = {430--434},
  publisher    = {{ACM}},
  year         = {2011},
  url          = {https://doi.org/10.1145/2147805.2147864},
  doi          = {10.1145/2147805.2147864},
  timestamp    = {Sun, 25 Oct 2020 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/conf/bcb/ChengOG11.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bcb/ChernikovC11,
  author       = {Andrey N. Chernikov and
                  Nikos Chrisochoides},
  editor       = {Robert Grossman and
                  Andrey Rzhetsky and
                  Sun Kim and
                  Wei Wang},
  title        = {Tetrahedral image-to-mesh conversion for biomedical applications},
  booktitle    = {{ACM} International Conference on Bioinformatics, Computational Biology
                  and Biomedicine, BCB' 11, Chicago, IL, {USA} - July 31 - August 03,
                  2011},
  pages        = {125--134},
  publisher    = {{ACM}},
  year         = {2011},
  url          = {https://doi.org/10.1145/2147805.2147819},
  doi          = {10.1145/2147805.2147819},
  timestamp    = {Tue, 06 Nov 2018 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/conf/bcb/ChernikovC11.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bcb/CheungDP11,
  author       = {Yam Ki Cheung and
                  Ovidiu Daescu and
                  Lech Papiez},
  editor       = {Robert Grossman and
                  Andrey Rzhetsky and
                  Sun Kim and
                  Wei Wang},
  title        = {Volume matching with application in medical treatment planning},
  booktitle    = {{ACM} International Conference on Bioinformatics, Computational Biology
                  and Biomedicine, BCB' 11, Chicago, IL, {USA} - July 31 - August 03,
                  2011},
  pages        = {487--489},
  publisher    = {{ACM}},
  year         = {2011},
  url          = {https://doi.org/10.1145/2147805.2147878},
  doi          = {10.1145/2147805.2147878},
  timestamp    = {Tue, 06 Nov 2018 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/conf/bcb/CheungDP11.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bcb/ChuaZBDTY11,
  author       = {Huey{-}Eng Chua and
                  Qing Zhao and
                  Sourav S. Bhowmick and
                  C. Forbes Dewey Jr. and
                  Lisa Tucker{-}Kellogg and
                  Hanry Yu},
  editor       = {Robert Grossman and
                  Andrey Rzhetsky and
                  Sun Kim and
                  Wei Wang},
  title        = {Pani: a novel algorithm for fast discovery of putative target nodes
                  in signaling networks},
  booktitle    = {{ACM} International Conference on Bioinformatics, Computational Biology
                  and Biomedicine, BCB' 11, Chicago, IL, {USA} - July 31 - August 03,
                  2011},
  pages        = {284--288},
  publisher    = {{ACM}},
  year         = {2011},
  url          = {https://doi.org/10.1145/2147805.2147836},
  doi          = {10.1145/2147805.2147836},
  timestamp    = {Sun, 25 Oct 2020 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/conf/bcb/ChuaZBDTY11.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bcb/CicekO11,
  author       = {A. Erc{\"{u}}ment {\c{C}}i{\c{c}}ek and
                  Gultekin {\"{O}}zsoyoglu},
  editor       = {Robert Grossman and
                  Andrey Rzhetsky and
                  Sun Kim and
                  Wei Wang},
  title        = {Resolving observation conflicts in steady state metabolic network
                  dynamics analysis},
  booktitle    = {{ACM} International Conference on Bioinformatics, Computational Biology
                  and Biomedicine, BCB' 11, Chicago, IL, {USA} - July 31 - August 03,
                  2011},
  pages        = {409--414},
  publisher    = {{ACM}},
  year         = {2011},
  url          = {https://doi.org/10.1145/2147805.2147860},
  doi          = {10.1145/2147805.2147860},
  timestamp    = {Fri, 11 Feb 2022 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/conf/bcb/CicekO11.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bcb/CorderoLAFCBCMC11,
  author       = {Francesca Cordero and
                  Stefania Lanzardo and
                  Maddalena Arigoni and
                  Chiara Fornari and
                  Laura Conti and
                  Gianfranco Balbo and
                  Federica Cavallo and
                  Daniele Manini and
                  Raffaele A. Calogero},
  editor       = {Robert Grossman and
                  Andrey Rzhetsky and
                  Sun Kim and
                  Wei Wang},
  title        = {Cancer stem cell based adjuvant for oncoantingen-driven vaccination},
  booktitle    = {{ACM} International Conference on Bioinformatics, Computational Biology
                  and Biomedicine, BCB' 11, Chicago, IL, {USA} - July 31 - August 03,
                  2011},
  pages        = {564--568},
  publisher    = {{ACM}},
  year         = {2011},
  url          = {https://doi.org/10.1145/2147805.2147902},
  doi          = {10.1145/2147805.2147902},
  timestamp    = {Sun, 02 Oct 2022 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/conf/bcb/CorderoLAFCBCMC11.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bcb/DangAK11,
  author       = {Michael Dang and
                  Ferhat Ay and
                  Tamer Kahveci},
  editor       = {Robert Grossman and
                  Andrey Rzhetsky and
                  Sun Kim and
                  Wei Wang},
  title        = {A novel framework for large scale metabolic network alignments by
                  compression},
  booktitle    = {{ACM} International Conference on Bioinformatics, Computational Biology
                  and Biomedicine, BCB' 11, Chicago, IL, {USA} - July 31 - August 03,
                  2011},
  pages        = {274--283},
  publisher    = {{ACM}},
  year         = {2011},
  url          = {https://doi.org/10.1145/2147805.2147835},
  doi          = {10.1145/2147805.2147835},
  timestamp    = {Tue, 06 Nov 2018 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/conf/bcb/DangAK11.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bcb/DiasDS11,
  author       = {Zanoni Dias and
                  Ulisses Dias and
                  Jo{\~{a}}o C. Setubal},
  editor       = {Robert Grossman and
                  Andrey Rzhetsky and
                  Sun Kim and
                  Wei Wang},
  title        = {Using inversion signatures to generate draft genome sequence scaffolds},
  booktitle    = {{ACM} International Conference on Bioinformatics, Computational Biology
                  and Biomedicine, BCB' 11, Chicago, IL, {USA} - July 31 - August 03,
                  2011},
  pages        = {39--48},
  publisher    = {{ACM}},
  year         = {2011},
  url          = {https://doi.org/10.1145/2147805.2147810},
  doi          = {10.1145/2147805.2147810},
  timestamp    = {Mon, 26 Jun 2023 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/conf/bcb/DiasDS11.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bcb/DuLMSNHZ11,
  author       = {Nan Du and
                  Kang Li and
                  Supriya D. Mahajan and
                  Stanley A. Schwartz and
                  Bindukumar B. Nair and
                  Chiu Bin Hsiao and
                  Aidong Zhang},
  editor       = {Robert Grossman and
                  Andrey Rzhetsky and
                  Sun Kim and
                  Wei Wang},
  title        = {Gene Co-Adaboost: a semi-supervised approach for classifying gene
                  expression data},
  booktitle    = {{ACM} International Conference on Bioinformatics, Computational Biology
                  and Biomedicine, BCB' 11, Chicago, IL, {USA} - July 31 - August 03,
                  2011},
  pages        = {531--535},
  publisher    = {{ACM}},
  year         = {2011},
  url          = {https://doi.org/10.1145/2147805.2147892},
  doi          = {10.1145/2147805.2147892},
  timestamp    = {Wed, 16 Aug 2023 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/conf/bcb/DuLMSNHZ11.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bcb/EickhoffAGMH11,
  author       = {Christopher S. Eickhoff and
                  Matthew Ardito and
                  Eric Gustafson and
                  William D. Martin and
                  Daniel F. Hoft},
  editor       = {Robert Grossman and
                  Andrey Rzhetsky and
                  Sun Kim and
                  Wei Wang},
  title        = {Generation of novel Chagas vaccines: evolving studies/work in progress},
  booktitle    = {{ACM} International Conference on Bioinformatics, Computational Biology
                  and Biomedicine, BCB' 11, Chicago, IL, {USA} - July 31 - August 03,
                  2011},
  pages        = {579--583},
  publisher    = {{ACM}},
  year         = {2011},
  url          = {https://doi.org/10.1145/2147805.2147904},
  doi          = {10.1145/2147805.2147904},
  timestamp    = {Tue, 06 Nov 2018 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/conf/bcb/EickhoffAGMH11.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bcb/EllingsonZ11,
  author       = {Leif Ellingson and
                  Jinfeng Zhang},
  editor       = {Robert Grossman and
                  Andrey Rzhetsky and
                  Sun Kim and
                  Wei Wang},
  title        = {An efficient algorithm for matching protein binding sites for protein
                  function prediction},
  booktitle    = {{ACM} International Conference on Bioinformatics, Computational Biology
                  and Biomedicine, BCB' 11, Chicago, IL, {USA} - July 31 - August 03,
                  2011},
  pages        = {289--293},
  publisher    = {{ACM}},
  year         = {2011},
  url          = {https://doi.org/10.1145/2147805.2147837},
  doi          = {10.1145/2147805.2147837},
  timestamp    = {Sun, 25 Oct 2020 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/conf/bcb/EllingsonZ11.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bcb/FanningMS11,
  author       = {M. Leigh Fanning and
                  Joanne Macdonald and
                  Darko Stefanovic},
  editor       = {Robert Grossman and
                  Andrey Rzhetsky and
                  Sun Kim and
                  Wei Wang},
  title        = {{ISO:} numeric representation of nucleic acid form},
  booktitle    = {{ACM} International Conference on Bioinformatics, Computational Biology
                  and Biomedicine, BCB' 11, Chicago, IL, {USA} - July 31 - August 03,
                  2011},
  pages        = {404--408},
  publisher    = {{ACM}},
  year         = {2011},
  url          = {https://doi.org/10.1145/2147805.2147859},
  doi          = {10.1145/2147805.2147859},
  timestamp    = {Wed, 14 Nov 2018 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/conf/bcb/FanningMS11.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bcb/FlouriIP11,
  author       = {Tom{\'{a}}s Flouri and
                  Costas S. Iliopoulos and
                  Solon P. Pissis},
  editor       = {Robert Grossman and
                  Andrey Rzhetsky and
                  Sun Kim and
                  Wei Wang},
  title        = {DynMap: mapping short reads to multiple related genomes},
  booktitle    = {{ACM} International Conference on Bioinformatics, Computational Biology
                  and Biomedicine, BCB' 11, Chicago, IL, {USA} - July 31 - August 03,
                  2011},
  pages        = {330--334},
  publisher    = {{ACM}},
  year         = {2011},
  url          = {https://doi.org/10.1145/2147805.2147845},
  doi          = {10.1145/2147805.2147845},
  timestamp    = {Sat, 30 Sep 2023 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/conf/bcb/FlouriIP11.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bcb/FlouriPFPIT11,
  author       = {Tom{\'{a}}s Flouri and
                  Kunsoo Park and
                  Kimon Frousios and
                  Solon P. Pissis and
                  Costas S. Iliopoulos and
                  German Tischler},
  editor       = {Robert Grossman and
                  Andrey Rzhetsky and
                  Sun Kim and
                  Wei Wang},
  title        = {Approximate string-matching with a single gap for sequence alignment},
  booktitle    = {{ACM} International Conference on Bioinformatics, Computational Biology
                  and Biomedicine, BCB' 11, Chicago, IL, {USA} - July 31 - August 03,
                  2011},
  pages        = {490--492},
  publisher    = {{ACM}},
  year         = {2011},
  url          = {https://doi.org/10.1145/2147805.2147879},
  doi          = {10.1145/2147805.2147879},
  timestamp    = {Sat, 30 Sep 2023 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/conf/bcb/FlouriPFPIT11.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bcb/GhoshD11,
  author       = {Anupam Ghosh and
                  Rajat K. De},
  editor       = {Robert Grossman and
                  Andrey Rzhetsky and
                  Sun Kim and
                  Wei Wang},
  title        = {A fuzzy entropy based approach for development of gene prediction
                  networks (GPNs): detecting altered dependency in carcinogenic state},
  booktitle    = {{ACM} International Conference on Bioinformatics, Computational Biology
                  and Biomedicine, BCB' 11, Chicago, IL, {USA} - July 31 - August 03,
                  2011},
  pages        = {320--324},
  publisher    = {{ACM}},
  year         = {2011},
  url          = {https://doi.org/10.1145/2147805.2147843},
  doi          = {10.1145/2147805.2147843},
  timestamp    = {Wed, 07 Dec 2022 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/conf/bcb/GhoshD11.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bcb/GonzalezDGABP11,
  author       = {Alejandro Rodr{\'{\i}}guez Gonz{\'{a}}lez and
                  Enrique Jim{\'{e}}nez{-}Domingo and
                  {\'{A}}ngel Garc{\'{\i}}a{-}Crespo and
                  Giner Alor{-}Hern{\'{a}}ndez and
                  Juan Miguel G{\'{o}}mez{-}Berb{\'{\i}}s and
                  Rub{\'{e}}n Posada{-}G{\'{o}}mez},
  editor       = {Robert Grossman and
                  Andrey Rzhetsky and
                  Sun Kim and
                  Wei Wang},
  title        = {Designing an ontology to support the creation of diagnostic decision
                  support system},
  booktitle    = {{ACM} International Conference on Bioinformatics, Computational Biology
                  and Biomedicine, BCB' 11, Chicago, IL, {USA} - July 31 - August 03,
                  2011},
  pages        = {612--616},
  publisher    = {{ACM}},
  year         = {2011},
  url          = {https://doi.org/10.1145/2147805.2147911},
  doi          = {10.1145/2147805.2147911},
  timestamp    = {Thu, 14 Oct 2021 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/conf/bcb/GonzalezDGABP11.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bcb/GonzalezLJ11,
  author       = {Luis C. Gonz{\'{a}}lez and
                  Dennis R. Livesay and
                  Donald J. Jacobs},
  editor       = {Robert Grossman and
                  Andrey Rzhetsky and
                  Sun Kim and
                  Wei Wang},
  title        = {Improving protein flexibility predictions by combining statistical
                  sampling with a mean-field virtual Pebble Game},
  booktitle    = {{ACM} International Conference on Bioinformatics, Computational Biology
                  and Biomedicine, BCB' 11, Chicago, IL, {USA} - July 31 - August 03,
                  2011},
  pages        = {294--298},
  publisher    = {{ACM}},
  year         = {2011},
  url          = {https://doi.org/10.1145/2147805.2147838},
  doi          = {10.1145/2147805.2147838},
  timestamp    = {Tue, 06 Nov 2018 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/conf/bcb/GonzalezLJ11.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bcb/GulsoyGK11,
  author       = {G{\"{u}}nhan G{\"{u}}lsoy and
                  Bhavik Gandhi and
                  Tamer Kahveci},
  editor       = {Robert Grossman and
                  Andrey Rzhetsky and
                  Sun Kim and
                  Wei Wang},
  title        = {Topology aware coloring of gene regulatory networks},
  booktitle    = {{ACM} International Conference on Bioinformatics, Computational Biology
                  and Biomedicine, BCB' 11, Chicago, IL, {USA} - July 31 - August 03,
                  2011},
  pages        = {435--440},
  publisher    = {{ACM}},
  year         = {2011},
  url          = {https://doi.org/10.1145/2147805.2147865},
  doi          = {10.1145/2147805.2147865},
  timestamp    = {Tue, 06 Nov 2018 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/conf/bcb/GulsoyGK11.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bcb/GuzziVC11,
  author       = {Pietro Hiram Guzzi and
                  Pierangelo Veltri and
                  Mario Cannataro},
  editor       = {Robert Grossman and
                  Andrey Rzhetsky and
                  Sun Kim and
                  Wei Wang},
  title        = {Experimental evaluation of OntoPIN: an ontology-annotated {PPI} database},
  booktitle    = {{ACM} International Conference on Bioinformatics, Computational Biology
                  and Biomedicine, BCB' 11, Chicago, IL, {USA} - July 31 - August 03,
                  2011},
  pages        = {656--660},
  publisher    = {{ACM}},
  year         = {2011},
  url          = {https://doi.org/10.1145/2147805.2147919},
  doi          = {10.1145/2147805.2147919},
  timestamp    = {Wed, 19 Feb 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/conf/bcb/GuzziVC11.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bcb/HaghighiB11,
  author       = {Maryam Haghighi and
                  Sylvia C. Boyd},
  editor       = {Robert Grossman and
                  Andrey Rzhetsky and
                  Sun Kim and
                  Wei Wang},
  title        = {A fast method for large-scale multichromosomal breakpoint median problems},
  booktitle    = {{ACM} International Conference on Bioinformatics, Computational Biology
                  and Biomedicine, BCB' 11, Chicago, IL, {USA} - July 31 - August 03,
                  2011},
  pages        = {162--171},
  publisher    = {{ACM}},
  year         = {2011},
  url          = {https://doi.org/10.1145/2147805.2147823},
  doi          = {10.1145/2147805.2147823},
  timestamp    = {Tue, 06 Nov 2018 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/conf/bcb/HaghighiB11.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bcb/HallHL11,
  author       = {Aaron Smalter Hall and
                  Jun Huan and
                  Gerald H. Lushington},
  editor       = {Robert Grossman and
                  Andrey Rzhetsky and
                  Sun Kim and
                  Wei Wang},
  title        = {Similarity boosting for label noise tolerance in protein-chemical
                  interaction prediction},
  booktitle    = {{ACM} International Conference on Bioinformatics, Computational Biology
                  and Biomedicine, BCB' 11, Chicago, IL, {USA} - July 31 - August 03,
                  2011},
  pages        = {226--234},
  publisher    = {{ACM}},
  year         = {2011},
  url          = {https://doi.org/10.1145/2147805.2147830},
  doi          = {10.1145/2147805.2147830},
  timestamp    = {Sat, 19 Oct 2019 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/conf/bcb/HallHL11.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bcb/HamiltonRB11,
  author       = {Michael Hamilton and
                  A. S. N. Reddy and
                  Asa Ben{-}Hur},
  editor       = {Robert Grossman and
                  Andrey Rzhetsky and
                  Sun Kim and
                  Wei Wang},
  title        = {Kernel methods for Calmodulin binding and binding site prediction},
  booktitle    = {{ACM} International Conference on Bioinformatics, Computational Biology
                  and Biomedicine, BCB' 11, Chicago, IL, {USA} - July 31 - August 03,
                  2011},
  pages        = {381--386},
  publisher    = {{ACM}},
  year         = {2011},
  url          = {https://doi.org/10.1145/2147805.2147855},
  doi          = {10.1145/2147805.2147855},
  timestamp    = {Sat, 24 Nov 2018 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/conf/bcb/HamiltonRB11.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bcb/HeFB11,
  author       = {Lu He and
                  Alan M. Friedman and
                  Chris Bailey{-}Kellogg},
  editor       = {Robert Grossman and
                  Andrey Rzhetsky and
                  Sun Kim and
                  Wei Wang},
  title        = {Algorithms for optimizing cross-overs in {DNA} shuffling},
  booktitle    = {{ACM} International Conference on Bioinformatics, Computational Biology
                  and Biomedicine, BCB' 11, Chicago, IL, {USA} - July 31 - August 03,
                  2011},
  pages        = {143--152},
  publisher    = {{ACM}},
  year         = {2011},
  url          = {https://doi.org/10.1145/2147805.2147821},
  doi          = {10.1145/2147805.2147821},
  timestamp    = {Tue, 06 Nov 2018 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/conf/bcb/HeFB11.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bcb/HeKEHGH11,
  author       = {Dan He and
                  Pratima Kunwar and
                  Eleazar Eskin and
                  Helen Horton and
                  Peter B. Gilbert and
                  Tomer Hertz},
  editor       = {Robert Grossman and
                  Andrey Rzhetsky and
                  Sun Kim and
                  Wei Wang},
  title        = {Using {HLA} binding prediction algorithms for epitope mapping in {HIV}
                  vaccine clinical trials},
  booktitle    = {{ACM} International Conference on Bioinformatics, Computational Biology
                  and Biomedicine, BCB' 11, Chicago, IL, {USA} - July 31 - August 03,
                  2011},
  pages        = {594--601},
  publisher    = {{ACM}},
  year         = {2011},
  url          = {https://doi.org/10.1145/2147805.2147907},
  doi          = {10.1145/2147805.2147907},
  timestamp    = {Sun, 02 Jun 2019 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/conf/bcb/HeKEHGH11.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bcb/HuWR11,
  author       = {Zhi{-}Liang Hu and
                  Xiaolin Wu and
                  James M. Reecy},
  editor       = {Robert Grossman and
                  Andrey Rzhetsky and
                  Sun Kim and
                  Wei Wang},
  title        = {Extension of Animal QTLdb: {QTL} meta-analysis on the fly},
  booktitle    = {{ACM} International Conference on Bioinformatics, Computational Biology
                  and Biomedicine, BCB' 11, Chicago, IL, {USA} - July 31 - August 03,
                  2011},
  pages        = {475--477},
  publisher    = {{ACM}},
  year         = {2011},
  url          = {https://doi.org/10.1145/2147805.2147874},
  doi          = {10.1145/2147805.2147874},
  timestamp    = {Tue, 06 Nov 2018 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/conf/bcb/HuWR11.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bcb/JangGL11,
  author       = {Richard Jang and
                  Xin Gao and
                  Ming Li},
  editor       = {Robert Grossman and
                  Andrey Rzhetsky and
                  Sun Kim and
                  Wei Wang},
  title        = {Combining ambiguous chemical shift mapping with structure-based backbone
                  and {NOE} assignment from \({}^{\mbox{15}}\)N-NOESY},
  booktitle    = {{ACM} International Conference on Bioinformatics, Computational Biology
                  and Biomedicine, BCB' 11, Chicago, IL, {USA} - July 31 - August 03,
                  2011},
  pages        = {76--86},
  publisher    = {{ACM}},
  year         = {2011},
  url          = {https://doi.org/10.1145/2147805.2147814},
  doi          = {10.1145/2147805.2147814},
  timestamp    = {Tue, 06 Nov 2018 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/conf/bcb/JangGL11.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bcb/JangJHH11,
  author       = {Woo{-}Hyuk Jang and
                  Suk Hoon Jung and
                  Bo{-}ra Hyun and
                  Dong{-}Soo Han},
  editor       = {Robert Grossman and
                  Andrey Rzhetsky and
                  Sun Kim and
                  Wei Wang},
  title        = {Modeling of multi domain contribution to protein interaction},
  booktitle    = {{ACM} International Conference on Bioinformatics, Computational Biology
                  and Biomedicine, BCB' 11, Chicago, IL, {USA} - July 31 - August 03,
                  2011},
  pages        = {304--308},
  publisher    = {{ACM}},
  year         = {2011},
  url          = {https://doi.org/10.1145/2147805.2147840},
  doi          = {10.1145/2147805.2147840},
  timestamp    = {Tue, 06 Nov 2018 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/conf/bcb/JangJHH11.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bcb/JiangK11,
  author       = {Zhonghua Jiang and
                  George Karypis},
  editor       = {Robert Grossman and
                  Andrey Rzhetsky and
                  Sun Kim and
                  Wei Wang},
  title        = {Automatic detection of vaccine adverse reactions by incorporating
                  historical medical conditions},
  booktitle    = {{ACM} International Conference on Bioinformatics, Computational Biology
                  and Biomedicine, BCB' 11, Chicago, IL, {USA} - July 31 - August 03,
                  2011},
  pages        = {547--549},
  publisher    = {{ACM}},
  year         = {2011},
  url          = {https://doi.org/10.1145/2147805.2147896},
  doi          = {10.1145/2147805.2147896},
  timestamp    = {Wed, 06 Sep 2023 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/conf/bcb/JiangK11.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bcb/JohnsonWCH11,
  author       = {Daniel Johnson and
                  Kun Wang and
                  Carole L. Cramer and
                  Xiuzhen Huang},
  editor       = {Robert Grossman and
                  Andrey Rzhetsky and
                  Sun Kim and
                  Wei Wang},
  title        = {Graph-based approach for gene markers and applications in next-generation
                  sequencing data analysis},
  booktitle    = {{ACM} International Conference on Bioinformatics, Computational Biology
                  and Biomedicine, BCB' 11, Chicago, IL, {USA} - July 31 - August 03,
                  2011},
  pages        = {511--513},
  publisher    = {{ACM}},
  year         = {2011},
  url          = {https://doi.org/10.1145/2147805.2147886},
  doi          = {10.1145/2147805.2147886},
  timestamp    = {Tue, 06 Nov 2018 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/conf/bcb/JohnsonWCH11.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bcb/KarabiberWF11,
  author       = {Fethullah Karabiber and
                  Kevin Weeks and
                  Oleg V. Favorov},
  editor       = {Robert Grossman and
                  Andrey Rzhetsky and
                  Sun Kim and
                  Wei Wang},
  title        = {Automated peak alignment for nucleic acid capillary electrophoresis
                  data by dynamic programming},
  booktitle    = {{ACM} International Conference on Bioinformatics, Computational Biology
                  and Biomedicine, BCB' 11, Chicago, IL, {USA} - July 31 - August 03,
                  2011},
  pages        = {544--546},
  publisher    = {{ACM}},
  year         = {2011},
  url          = {https://doi.org/10.1145/2147805.2147895},
  doi          = {10.1145/2147805.2147895},
  timestamp    = {Sun, 25 Oct 2020 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/conf/bcb/KarabiberWF11.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bcb/KenleyKC11,
  author       = {Edward Casey Kenley and
                  Lyles Kirk and
                  Young{-}Rae Cho},
  editor       = {Robert Grossman and
                  Andrey Rzhetsky and
                  Sun Kim and
                  Wei Wang},
  title        = {Differentiating party and date hubs in protein interaction networks
                  using semantic similarity measures},
  booktitle    = {{ACM} International Conference on Bioinformatics, Computational Biology
                  and Biomedicine, BCB' 11, Chicago, IL, {USA} - July 31 - August 03,
                  2011},
  pages        = {641--645},
  publisher    = {{ACM}},
  year         = {2011},
  url          = {https://doi.org/10.1145/2147805.2147916},
  doi          = {10.1145/2147805.2147916},
  timestamp    = {Tue, 06 Nov 2018 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/conf/bcb/KenleyKC11.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bcb/KimRBZ11,
  author       = {Taehyong Kim and
                  Murali Ramanathan and
                  Lawrence Bone and
                  Aidong Zhang},
  editor       = {Robert Grossman and
                  Andrey Rzhetsky and
                  Sun Kim and
                  Wei Wang},
  title        = {Mathematical network model for bone mineral density {(BMD)} and bone
                  quality assessment},
  booktitle    = {{ACM} International Conference on Bioinformatics, Computational Biology
                  and Biomedicine, BCB' 11, Chicago, IL, {USA} - July 31 - August 03,
                  2011},
  pages        = {69--75},
  publisher    = {{ACM}},
  year         = {2011},
  url          = {https://doi.org/10.1145/2147805.2147813},
  doi          = {10.1145/2147805.2147813},
  timestamp    = {Tue, 06 Nov 2018 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/conf/bcb/KimRBZ11.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bcb/KimYP11,
  author       = {Yohan Kim and
                  Jonathan W. Yewdell and
                  Bjoern Peters},
  editor       = {Robert Grossman and
                  Andrey Rzhetsky and
                  Sun Kim and
                  Wei Wang},
  title        = {Determining positional bias of {MHC} class {I} restricted T-cell epitopes
                  in viral antigens},
  booktitle    = {{ACM} International Conference on Bioinformatics, Computational Biology
                  and Biomedicine, BCB' 11, Chicago, IL, {USA} - July 31 - August 03,
                  2011},
  pages        = {607--611},
  publisher    = {{ACM}},
  year         = {2011},
  url          = {https://doi.org/10.1145/2147805.2147909},
  doi          = {10.1145/2147805.2147909},
  timestamp    = {Tue, 06 Nov 2018 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/conf/bcb/KimYP11.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bcb/KuwaharaM11,
  author       = {Hiroyuki Kuwahara and
                  Chris J. Myers},
  editor       = {Robert Grossman and
                  Andrey Rzhetsky and
                  Sun Kim and
                  Wei Wang},
  title        = {Erlang-delayed stochastic chemical kinetic formalism for efficient
                  analysis of biological systems with non-elementary reaction effects},
  booktitle    = {{ACM} International Conference on Bioinformatics, Computational Biology
                  and Biomedicine, BCB' 11, Chicago, IL, {USA} - July 31 - August 03,
                  2011},
  pages        = {425--429},
  publisher    = {{ACM}},
  year         = {2011},
  url          = {https://doi.org/10.1145/2147805.2147863},
  doi          = {10.1145/2147805.2147863},
  timestamp    = {Sun, 02 Jun 2019 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/conf/bcb/KuwaharaM11.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bcb/KuzelkaSZ11,
  author       = {Ondrej Kuzelka and
                  Andrea Szab{\'{o}}ov{\'{a}} and
                  Filip Zelezn{\'{y}}},
  editor       = {Robert Grossman and
                  Andrey Rzhetsky and
                  Sun Kim and
                  Wei Wang},
  title        = {Gaussian logic and its applications in bioinformatics},
  booktitle    = {{ACM} International Conference on Bioinformatics, Computational Biology
                  and Biomedicine, BCB' 11, Chicago, IL, {USA} - July 31 - August 03,
                  2011},
  pages        = {496--498},
  publisher    = {{ACM}},
  year         = {2011},
  url          = {https://doi.org/10.1145/2147805.2147881},
  doi          = {10.1145/2147805.2147881},
  timestamp    = {Sat, 19 Oct 2019 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/conf/bcb/KuzelkaSZ11.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bcb/Kwang11,
  author       = {Kim Jong Kwang},
  editor       = {Robert Grossman and
                  Andrey Rzhetsky and
                  Sun Kim and
                  Wei Wang},
  title        = {Brain tumor pathway identification by integrating transcriptome and
                  interactome data},
  booktitle    = {{ACM} International Conference on Bioinformatics, Computational Biology
                  and Biomedicine, BCB' 11, Chicago, IL, {USA} - July 31 - August 03,
                  2011},
  pages        = {651--655},
  publisher    = {{ACM}},
  year         = {2011},
  url          = {https://doi.org/10.1145/2147805.2147918},
  doi          = {10.1145/2147805.2147918},
  timestamp    = {Tue, 06 Nov 2018 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/conf/bcb/Kwang11.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bcb/KwohC11,
  author       = {Chee Keong Kwoh and
                  Lakshmi Chandrasekaran},
  editor       = {Robert Grossman and
                  Andrey Rzhetsky and
                  Sun Kim and
                  Wei Wang},
  title        = {Phylogenetic and mutational analysis of 2008, 2009 {\&} 2010 neuraminidase
                  of {H1N1} influenza {A}},
  booktitle    = {{ACM} International Conference on Bioinformatics, Computational Biology
                  and Biomedicine, BCB' 11, Chicago, IL, {USA} - July 31 - August 03,
                  2011},
  pages        = {468--470},
  publisher    = {{ACM}},
  year         = {2011},
  url          = {https://doi.org/10.1145/2147805.2147872},
  doi          = {10.1145/2147805.2147872},
  timestamp    = {Fri, 28 Aug 2020 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/conf/bcb/KwohC11.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bcb/LeeH11,
  author       = {Chih Lee and
                  Chun{-}Hsi Huang},
  editor       = {Robert Grossman and
                  Andrey Rzhetsky and
                  Sun Kim and
                  Wei Wang},
  title        = {Geometric visualization of {TF} binding sites in context},
  booktitle    = {{ACM} International Conference on Bioinformatics, Computational Biology
                  and Biomedicine, BCB' 11, Chicago, IL, {USA} - July 31 - August 03,
                  2011},
  pages        = {457--461},
  publisher    = {{ACM}},
  year         = {2011},
  url          = {https://doi.org/10.1145/2147805.2147869},
  doi          = {10.1145/2147805.2147869},
  timestamp    = {Tue, 06 Nov 2018 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/conf/bcb/LeeH11.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bcb/Legaz-GarciaMMMF11,
  author       = {Mar{\'{\i}}a Del Carmen Legaz{-}Garc{\'{\i}}a and
                  Jos{\'{e}} Antonio Mi{\~{n}}arro{-}Gim{\'{e}}nez and
                  Marisa Madrid and
                  Santiago Torres Mart{\'{\i}}nez and
                  Jesualdo Tom{\'{a}}s Fern{\'{a}}ndez{-}Breis},
  editor       = {Robert Grossman and
                  Andrey Rzhetsky and
                  Sun Kim and
                  Wei Wang},
  title        = {Using ontologies for supporting genomic sequence annotation projects},
  booktitle    = {{ACM} International Conference on Bioinformatics, Computational Biology
                  and Biomedicine, BCB' 11, Chicago, IL, {USA} - July 31 - August 03,
                  2011},
  pages        = {617--625},
  publisher    = {{ACM}},
  year         = {2011},
  url          = {https://doi.org/10.1145/2147805.2147912},
  doi          = {10.1145/2147805.2147912},
  timestamp    = {Sat, 19 Oct 2019 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/conf/bcb/Legaz-GarciaMMMF11.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bcb/LiHZ11,
  author       = {Yuan Li and
                  Aaron L. Halpern and
                  Shaojie Zhang},
  editor       = {Robert Grossman and
                  Andrey Rzhetsky and
                  Sun Kim and
                  Wei Wang},
  title        = {TreeLign: simultaneous stepwise alignment and phylogenetic positioning,
                  with its application to automatic phylogenetic assignment of 16S rRNAs},
  booktitle    = {{ACM} International Conference on Bioinformatics, Computational Biology
                  and Biomedicine, BCB' 11, Chicago, IL, {USA} - July 31 - August 03,
                  2011},
  pages        = {451--456},
  publisher    = {{ACM}},
  year         = {2011},
  url          = {https://doi.org/10.1145/2147805.2147868},
  doi          = {10.1145/2147805.2147868},
  timestamp    = {Tue, 06 Nov 2018 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/conf/bcb/LiHZ11.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bcb/LiZ11,
  author       = {Yuan Li and
                  Shaojie Zhang},
  editor       = {Robert Grossman and
                  Andrey Rzhetsky and
                  Sun Kim and
                  Wei Wang},
  title        = {Predicting folding pathways between {RNA} conformational structures
                  guided by {RNA} stacks},
  booktitle    = {{ACM} International Conference on Bioinformatics, Computational Biology
                  and Biomedicine, BCB' 11, Chicago, IL, {USA} - July 31 - August 03,
                  2011},
  pages        = {245--253},
  publisher    = {{ACM}},
  year         = {2011},
  url          = {https://doi.org/10.1145/2147805.2147832},
  doi          = {10.1145/2147805.2147832},
  timestamp    = {Tue, 06 Nov 2018 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/conf/bcb/LiZ11.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bcb/LinVS11,
  author       = {Tu{-}Liang Lin and
                  Santhosh Kumar Vammi and
                  Guang Song},
  editor       = {Robert Grossman and
                  Andrey Rzhetsky and
                  Sun Kim and
                  Wei Wang},
  title        = {Evaluating the quality of conformation sampling methods using experimental
                  residual dipolar coupling data},
  booktitle    = {{ACM} International Conference on Bioinformatics, Computational Biology
                  and Biomedicine, BCB' 11, Chicago, IL, {USA} - July 31 - August 03,
                  2011},
  pages        = {514--518},
  publisher    = {{ACM}},
  year         = {2011},
  url          = {https://doi.org/10.1145/2147805.2147887},
  doi          = {10.1145/2147805.2147887},
  timestamp    = {Tue, 06 Nov 2018 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/conf/bcb/LinVS11.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bcb/LiuCWLY11,
  author       = {Xuan Liu and
                  Shing{-}Wan Choi and
                  Thomas K. F. Wong and
                  Tak Wah Lam and
                  Siu{-}Ming Yiu},
  editor       = {Robert Grossman and
                  Andrey Rzhetsky and
                  Sun Kim and
                  Wei Wang},
  title        = {Detection of novel tandem duplication with next-generation sequencing},
  booktitle    = {{ACM} International Conference on Bioinformatics, Computational Biology
                  and Biomedicine, BCB' 11, Chicago, IL, {USA} - July 31 - August 03,
                  2011},
  pages        = {415--419},
  publisher    = {{ACM}},
  year         = {2011},
  url          = {https://doi.org/10.1145/2147805.2147861},
  doi          = {10.1145/2147805.2147861},
  timestamp    = {Wed, 14 Nov 2018 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/conf/bcb/LiuCWLY11.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bcb/LiuGKZ11,
  author       = {Yifeng Liu and
                  Zhaochen Guo and
                  Xiaodi Ke and
                  Osmar R. Za{\"{\i}}ane},
  editor       = {Robert Grossman and
                  Andrey Rzhetsky and
                  Sun Kim and
                  Wei Wang},
  title        = {Protein subcellular localization prediction with associative classification
                  and multi-class {SVM}},
  booktitle    = {{ACM} International Conference on Bioinformatics, Computational Biology
                  and Biomedicine, BCB' 11, Chicago, IL, {USA} - July 31 - August 03,
                  2011},
  pages        = {493--495},
  publisher    = {{ACM}},
  year         = {2011},
  url          = {https://doi.org/10.1145/2147805.2147880},
  doi          = {10.1145/2147805.2147880},
  timestamp    = {Tue, 06 Nov 2018 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/conf/bcb/LiuGKZ11.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bcb/LuL11,
  author       = {Songjian Lu and
                  Xinghua Lu},
  editor       = {Robert Grossman and
                  Andrey Rzhetsky and
                  Sun Kim and
                  Wei Wang},
  title        = {A graph model and an exact algorithm for finding transcription factor
                  modules},
  booktitle    = {{ACM} International Conference on Bioinformatics, Computational Biology
                  and Biomedicine, BCB' 11, Chicago, IL, {USA} - July 31 - August 03,
                  2011},
  pages        = {355--359},
  publisher    = {{ACM}},
  year         = {2011},
  url          = {https://doi.org/10.1145/2147805.2147850},
  doi          = {10.1145/2147805.2147850},
  timestamp    = {Wed, 04 Dec 2024 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/conf/bcb/LuL11.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bcb/Maruyama11,
  author       = {Osamu Maruyama},
  editor       = {Robert Grossman and
                  Andrey Rzhetsky and
                  Sun Kim and
                  Wei Wang},
  title        = {Heterodimeric protein complex identification},
  booktitle    = {{ACM} International Conference on Bioinformatics, Computational Biology
                  and Biomedicine, BCB' 11, Chicago, IL, {USA} - July 31 - August 03,
                  2011},
  pages        = {499--501},
  publisher    = {{ACM}},
  year         = {2011},
  url          = {https://doi.org/10.1145/2147805.2147882},
  doi          = {10.1145/2147805.2147882},
  timestamp    = {Tue, 06 Nov 2018 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/conf/bcb/Maruyama11.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bcb/Masso11,
  author       = {Majid Masso},
  editor       = {Robert Grossman and
                  Andrey Rzhetsky and
                  Sun Kim and
                  Wei Wang},
  title        = {Sequence-based prediction of {HIV-1} coreceptor usage: utility of
                  n-grams for representing gp120 {V3} loops},
  booktitle    = {{ACM} International Conference on Bioinformatics, Computational Biology
                  and Biomedicine, BCB' 11, Chicago, IL, {USA} - July 31 - August 03,
                  2011},
  pages        = {309--314},
  publisher    = {{ACM}},
  year         = {2011},
  url          = {https://doi.org/10.1145/2147805.2147841},
  doi          = {10.1145/2147805.2147841},
  timestamp    = {Tue, 06 Nov 2018 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/conf/bcb/Masso11.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bcb/MathewO11,
  author       = {George Mathew and
                  Zoran Obradovic},
  editor       = {Robert Grossman and
                  Andrey Rzhetsky and
                  Sun Kim and
                  Wei Wang},
  title        = {Constraint graphs as security filters for privacy assurance in medical
                  transactions},
  booktitle    = {{ACM} International Conference on Bioinformatics, Computational Biology
                  and Biomedicine, BCB' 11, Chicago, IL, {USA} - July 31 - August 03,
                  2011},
  pages        = {502--504},
  publisher    = {{ACM}},
  year         = {2011},
  url          = {https://doi.org/10.1145/2147805.2147883},
  doi          = {10.1145/2147805.2147883},
  timestamp    = {Tue, 06 Nov 2018 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/conf/bcb/MathewO11.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bcb/Miskov-ZivanovBKVMF11,
  author       = {Natasa Miskov{-}Zivanov and
                  Andrew Bresticker and
                  Deepa Krishnaswamy and
                  Sreesan Venkatakrishnan and
                  Diana Marculescu and
                  James R. Faeder},
  editor       = {Robert Grossman and
                  Andrey Rzhetsky and
                  Sun Kim and
                  Wei Wang},
  title        = {Emulation of biological networks in reconfigurable hardware},
  booktitle    = {{ACM} International Conference on Bioinformatics, Computational Biology
                  and Biomedicine, BCB' 11, Chicago, IL, {USA} - July 31 - August 03,
                  2011},
  pages        = {536--540},
  publisher    = {{ACM}},
  year         = {2011},
  url          = {https://doi.org/10.1145/2147805.2147893},
  doi          = {10.1145/2147805.2147893},
  timestamp    = {Thu, 14 Oct 2021 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/conf/bcb/Miskov-ZivanovBKVMF11.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bcb/MoiseAMGRG11,
  author       = {Leonard Moise and
                  Matthew Ardito and
                  William D. Martin and
                  Eric Gustafson and
                  Alan Rothman and
                  Anne S. De Groot},
  editor       = {Robert Grossman and
                  Andrey Rzhetsky and
                  Sun Kim and
                  Wei Wang},
  title        = {Immunoinformatic discovery of potential cross-reactive {T} cell epitopes
                  in the measles genome},
  booktitle    = {{ACM} International Conference on Bioinformatics, Computational Biology
                  and Biomedicine, BCB' 11, Chicago, IL, {USA} - July 31 - August 03,
                  2011},
  pages        = {589--593},
  publisher    = {{ACM}},
  year         = {2011},
  url          = {https://doi.org/10.1145/2147805.2147906},
  doi          = {10.1145/2147805.2147906},
  timestamp    = {Wed, 14 Nov 2018 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/conf/bcb/MoiseAMGRG11.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bcb/MunozS11,
  author       = {Adriana Mu{\~{n}}oz and
                  David Sankoff},
  editor       = {Robert Grossman and
                  Andrey Rzhetsky and
                  Sun Kim and
                  Wei Wang},
  title        = {Changes in gene expression near evolutionary breakpoints},
  booktitle    = {{ACM} International Conference on Bioinformatics, Computational Biology
                  and Biomedicine, BCB' 11, Chicago, IL, {USA} - July 31 - August 03,
                  2011},
  pages        = {393--398},
  publisher    = {{ACM}},
  year         = {2011},
  url          = {https://doi.org/10.1145/2147805.2147857},
  doi          = {10.1145/2147805.2147857},
  timestamp    = {Tue, 06 Nov 2018 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/conf/bcb/MunozS11.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bcb/NadimpalliDC11,
  author       = {Shilpa Nadimpalli and
                  Noah M. Daniels and
                  Lenore Cowen},
  editor       = {Robert Grossman and
                  Andrey Rzhetsky and
                  Sun Kim and
                  Wei Wang},
  title        = {Formatt: correcting protein multiple structural alignments by sequence
                  peeking},
  booktitle    = {{ACM} International Conference on Bioinformatics, Computational Biology
                  and Biomedicine, BCB' 11, Chicago, IL, {USA} - July 31 - August 03,
                  2011},
  pages        = {315--319},
  publisher    = {{ACM}},
  year         = {2011},
  url          = {https://doi.org/10.1145/2147805.2147842},
  doi          = {10.1145/2147805.2147842},
  timestamp    = {Tue, 06 Nov 2018 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/conf/bcb/NadimpalliDC11.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bcb/NamikiHTS11,
  author       = {Toshiaki Namiki and
                  Tsuyoshi Hachiya and
                  Hideaki Tanaka and
                  Yasubumi Sakakibara},
  editor       = {Robert Grossman and
                  Andrey Rzhetsky and
                  Sun Kim and
                  Wei Wang},
  title        = {MetaVelvet: an extension of Velvet assembler to \emph{de novo} metagenome
                  assembly from short sequence reads},
  booktitle    = {{ACM} International Conference on Bioinformatics, Computational Biology
                  and Biomedicine, BCB' 11, Chicago, IL, {USA} - July 31 - August 03,
                  2011},
  pages        = {116--124},
  publisher    = {{ACM}},
  year         = {2011},
  url          = {https://doi.org/10.1145/2147805.2147818},
  doi          = {10.1145/2147805.2147818},
  timestamp    = {Tue, 06 Nov 2018 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/conf/bcb/NamikiHTS11.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bcb/NingWK11,
  author       = {Xia Ning and
                  Michael A. Walters and
                  George Karypis},
  editor       = {Robert Grossman and
                  Andrey Rzhetsky and
                  Sun Kim and
                  Wei Wang},
  title        = {Improved machine learning models for predicting selective compounds},
  booktitle    = {{ACM} International Conference on Bioinformatics, Computational Biology
                  and Biomedicine, BCB' 11, Chicago, IL, {USA} - July 31 - August 03,
                  2011},
  pages        = {106--115},
  publisher    = {{ACM}},
  year         = {2011},
  url          = {https://doi.org/10.1145/2147805.2147817},
  doi          = {10.1145/2147805.2147817},
  timestamp    = {Thu, 14 Oct 2021 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/conf/bcb/NingWK11.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bcb/OdibatR11,
  author       = {Omar Odibat and
                  Chandan K. Reddy},
  editor       = {Robert Grossman and
                  Andrey Rzhetsky and
                  Sun Kim and
                  Wei Wang},
  title        = {Ranking differential genes in co-expression networks},
  booktitle    = {{ACM} International Conference on Bioinformatics, Computational Biology
                  and Biomedicine, BCB' 11, Chicago, IL, {USA} - July 31 - August 03,
                  2011},
  pages        = {350--354},
  publisher    = {{ACM}},
  year         = {2011},
  url          = {https://doi.org/10.1145/2147805.2147849},
  doi          = {10.1145/2147805.2147849},
  timestamp    = {Sat, 24 Nov 2018 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/conf/bcb/OdibatR11.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bcb/OhKM11,
  author       = {Heung{-}Seon Oh and
                  Jong{-}Beom Kim and
                  Sung{-}Hyon Myaeng},
  editor       = {Robert Grossman and
                  Andrey Rzhetsky and
                  Sun Kim and
                  Wei Wang},
  title        = {Extracting targets and attributes of medical findings from radiology
                  reports in a mixture of languages},
  booktitle    = {{ACM} International Conference on Bioinformatics, Computational Biology
                  and Biomedicine, BCB' 11, Chicago, IL, {USA} - July 31 - August 03,
                  2011},
  pages        = {550--552},
  publisher    = {{ACM}},
  year         = {2011},
  url          = {https://doi.org/10.1145/2147805.2147897},
  doi          = {10.1145/2147805.2147897},
  timestamp    = {Tue, 06 Nov 2018 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/conf/bcb/OhKM11.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bcb/OliveiraS11,
  author       = {Suely Oliveira and
                  David E. Stewart},
  editor       = {Robert Grossman and
                  Andrey Rzhetsky and
                  Sun Kim and
                  Wei Wang},
  title        = {Clustering for bioinformatics via matrix optimization},
  booktitle    = {{ACM} International Conference on Bioinformatics, Computational Biology
                  and Biomedicine, BCB' 11, Chicago, IL, {USA} - July 31 - August 03,
                  2011},
  pages        = {559--563},
  publisher    = {{ACM}},
  year         = {2011},
  url          = {https://doi.org/10.1145/2147805.2147900},
  doi          = {10.1145/2147805.2147900},
  timestamp    = {Thu, 14 Oct 2021 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/conf/bcb/OliveiraS11.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bcb/OztanPBHPY11,
  author       = {Basak Oztan and
                  Lindsey M. Polizzotti and
                  Cemal {\c{C}}agatay Bilgin and
                  Kira M. Henderson and
                  George E. Plopper and
                  B{\"{u}}lent Yener},
  editor       = {Robert Grossman and
                  Andrey Rzhetsky and
                  Sun Kim and
                  Wei Wang},
  title        = {Classification of breast cancer grades through quantitative characterization
                  of ductal structure morphology in three-dimensional cultures},
  booktitle    = {{ACM} International Conference on Bioinformatics, Computational Biology
                  and Biomedicine, BCB' 11, Chicago, IL, {USA} - July 31 - August 03,
                  2011},
  pages        = {153--161},
  publisher    = {{ACM}},
  year         = {2011},
  url          = {https://doi.org/10.1145/2147805.2147822},
  doi          = {10.1145/2147805.2147822},
  timestamp    = {Tue, 06 Nov 2018 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/conf/bcb/OztanPBHPY11.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bcb/ParryPW11,
  author       = {R. Mitchell Parry and
                  John H. Phan and
                  May D. Wang},
  editor       = {Robert Grossman and
                  Andrey Rzhetsky and
                  Sun Kim and
                  Wei Wang},
  title        = {Win percentage: a novel measure for assessing the suitability of machine
                  classifiers for biological problems},
  booktitle    = {{ACM} International Conference on Bioinformatics, Computational Biology
                  and Biomedicine, BCB' 11, Chicago, IL, {USA} - July 31 - August 03,
                  2011},
  pages        = {29--38},
  publisher    = {{ACM}},
  year         = {2011},
  url          = {https://doi.org/10.1145/2147805.2147809},
  doi          = {10.1145/2147805.2147809},
  timestamp    = {Fri, 09 Apr 2021 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/conf/bcb/ParryPW11.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bcb/PellegriniRV11,
  author       = {Marco Pellegrini and
                  M. Elena Renda and
                  Alessio Vecchio},
  editor       = {Robert Grossman and
                  Andrey Rzhetsky and
                  Sun Kim and
                  Wei Wang},
  title        = {Detecting fuzzy amino acid tandem repeats in protein sequences},
  booktitle    = {{ACM} International Conference on Bioinformatics, Computational Biology
                  and Biomedicine, BCB' 11, Chicago, IL, {USA} - July 31 - August 03,
                  2011},
  pages        = {87--95},
  publisher    = {{ACM}},
  year         = {2011},
  url          = {https://doi.org/10.1145/2147805.2147815},
  doi          = {10.1145/2147805.2147815},
  timestamp    = {Sun, 02 Oct 2022 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/conf/bcb/PellegriniRV11.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bcb/PrabhakaraA11,
  author       = {Shruthi Prabhakara and
                  Raj Acharya},
  editor       = {Robert Grossman and
                  Andrey Rzhetsky and
                  Sun Kim and
                  Wei Wang},
  title        = {A two-way multi-dimensional mixture model for clustering metagenomic
                  sequences},
  booktitle    = {{ACM} International Conference on Bioinformatics, Computational Biology
                  and Biomedicine, BCB' 11, Chicago, IL, {USA} - July 31 - August 03,
                  2011},
  pages        = {191--200},
  publisher    = {{ACM}},
  year         = {2011},
  url          = {https://doi.org/10.1145/2147805.2147826},
  doi          = {10.1145/2147805.2147826},
  timestamp    = {Tue, 06 Nov 2018 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/conf/bcb/PrabhakaraA11.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bcb/QiMB11,
  author       = {Jianlong Qi and
                  Tom Michoel and
                  Gregory Butler},
  editor       = {Robert Grossman and
                  Andrey Rzhetsky and
                  Sun Kim and
                  Wei Wang},
  title        = {An integrative approach to infer regulation programs in a transcription
                  regulatory module network},
  booktitle    = {{ACM} International Conference on Bioinformatics, Computational Biology
                  and Biomedicine, BCB' 11, Chicago, IL, {USA} - July 31 - August 03,
                  2011},
  pages        = {218--225},
  publisher    = {{ACM}},
  year         = {2011},
  url          = {https://doi.org/10.1145/2147805.2147829},
  doi          = {10.1145/2147805.2147829},
  timestamp    = {Tue, 06 Nov 2018 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/conf/bcb/QiMB11.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bcb/ReynosoP11,
  author       = {Vinicio Reynoso and
                  Catherine Putonti},
  editor       = {Robert Grossman and
                  Andrey Rzhetsky and
                  Sun Kim and
                  Wei Wang},
  title        = {Mapping short sequencing reads to distant relatives},
  booktitle    = {{ACM} International Conference on Bioinformatics, Computational Biology
                  and Biomedicine, BCB' 11, Chicago, IL, {USA} - July 31 - August 03,
                  2011},
  pages        = {420--424},
  publisher    = {{ACM}},
  year         = {2011},
  url          = {https://doi.org/10.1145/2147805.2147862},
  doi          = {10.1145/2147805.2147862},
  timestamp    = {Tue, 06 Nov 2018 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/conf/bcb/ReynosoP11.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bcb/RezaeianR11,
  author       = {Iman Rezaeian and
                  Luis Rueda},
  editor       = {Robert Grossman and
                  Andrey Rzhetsky and
                  Sun Kim and
                  Wei Wang},
  title        = {Biological assessment of grid and spot detection in cDNA microarray
                  images},
  booktitle    = {{ACM} International Conference on Bioinformatics, Computational Biology
                  and Biomedicine, BCB' 11, Chicago, IL, {USA} - July 31 - August 03,
                  2011},
  pages        = {12--19},
  publisher    = {{ACM}},
  year         = {2011},
  url          = {https://doi.org/10.1145/2147805.2147807},
  doi          = {10.1145/2147805.2147807},
  timestamp    = {Wed, 08 Mar 2023 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/conf/bcb/RezaeianR11.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bcb/RiveraTM11,
  author       = {Corban G. Rivera and
                  Brett M. Tyler and
                  T. M. Murali},
  editor       = {Robert Grossman and
                  Andrey Rzhetsky and
                  Sun Kim and
                  Wei Wang},
  title        = {Sensitive detection of pathway perturbations in cancers: extended
                  abstract},
  booktitle    = {{ACM} International Conference on Bioinformatics, Computational Biology
                  and Biomedicine, BCB' 11, Chicago, IL, {USA} - July 31 - August 03,
                  2011},
  pages        = {59--68},
  publisher    = {{ACM}},
  year         = {2011},
  url          = {https://doi.org/10.1145/2147805.2147812},
  doi          = {10.1145/2147805.2147812},
  timestamp    = {Thu, 18 Jul 2019 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/conf/bcb/RiveraTM11.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bcb/RodriguezPJAG11,
  author       = {Jos{\'{e}} Mar{\'{\i}}a {\'{A}}lvarez Rodr{\'{\i}}guez and
                  Luis Polo and
                  Weena Jimenez and
                  Pablo Abella and
                  Jos{\'{e}} Emilio Labra Gayo},
  editor       = {Robert Grossman and
                  Andrey Rzhetsky and
                  Sun Kim and
                  Wei Wang},
  title        = {Application of the spreading activation technique for recommending
                  concepts of well-known ontologies in medical systems},
  booktitle    = {{ACM} International Conference on Bioinformatics, Computational Biology
                  and Biomedicine, BCB' 11, Chicago, IL, {USA} - July 31 - August 03,
                  2011},
  pages        = {626--635},
  publisher    = {{ACM}},
  year         = {2011},
  url          = {https://doi.org/10.1145/2147805.2147913},
  doi          = {10.1145/2147805.2147913},
  timestamp    = {Wed, 22 Mar 2023 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/conf/bcb/RodriguezPJAG11.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bcb/SalemSABBA11,
  author       = {Saeed Salem and
                  Loqmane Seridi and
                  Rami Alroobi and
                  James E. Brewer and
                  Shadi Banitaan and
                  Ibrahim Aljarah},
  editor       = {Robert Grossman and
                  Andrey Rzhetsky and
                  Sun Kim and
                  Wei Wang},
  title        = {{CLARM:} an integrative approach for functional modules discovery},
  booktitle    = {{ACM} International Conference on Bioinformatics, Computational Biology
                  and Biomedicine, BCB' 11, Chicago, IL, {USA} - July 31 - August 03,
                  2011},
  pages        = {646--650},
  publisher    = {{ACM}},
  year         = {2011},
  url          = {https://doi.org/10.1145/2147805.2147917},
  doi          = {10.1145/2147805.2147917},
  timestamp    = {Tue, 06 Nov 2018 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/conf/bcb/SalemSABBA11.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bcb/SeahBDY11,
  author       = {Boon{-}Siew Seah and
                  Sourav S. Bhowmick and
                  C. Forbes Dewey Jr. and
                  Hanry Yu},
  editor       = {Robert Grossman and
                  Andrey Rzhetsky and
                  Sun Kim and
                  Wei Wang},
  title        = {Fuse: towards multi-level functional summarization of protein interaction
                  networks},
  booktitle    = {{ACM} International Conference on Bioinformatics, Computational Biology
                  and Biomedicine, BCB' 11, Chicago, IL, {USA} - July 31 - August 03,
                  2011},
  pages        = {2--11},
  publisher    = {{ACM}},
  year         = {2011},
  url          = {https://doi.org/10.1145/2147805.2147806},
  doi          = {10.1145/2147805.2147806},
  timestamp    = {Sun, 25 Oct 2020 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/conf/bcb/SeahBDY11.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bcb/ShenL11,
  author       = {Chengcheng Shen and
                  Ying Liu},
  editor       = {Robert Grossman and
                  Andrey Rzhetsky and
                  Sun Kim and
                  Wei Wang},
  title        = {A tripartite clustering analysis on microRNA, gene and disease model},
  booktitle    = {{ACM} International Conference on Bioinformatics, Computational Biology
                  and Biomedicine, BCB' 11, Chicago, IL, {USA} - July 31 - August 03,
                  2011},
  pages        = {299--303},
  publisher    = {{ACM}},
  year         = {2011},
  url          = {https://doi.org/10.1145/2147805.2147839},
  doi          = {10.1145/2147805.2147839},
  timestamp    = {Tue, 06 Nov 2018 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/conf/bcb/ShenL11.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bcb/SherminJO11,
  author       = {Akther Shermin and
                  Hasan Jamil and
                  Mehmet A. Orgun},
  editor       = {Robert Grossman and
                  Andrey Rzhetsky and
                  Sun Kim and
                  Wei Wang},
  title        = {A scalable approach for inferring transcriptional regulation in the
                  yeast cell cycle},
  booktitle    = {{ACM} International Conference on Bioinformatics, Computational Biology
                  and Biomedicine, BCB' 11, Chicago, IL, {USA} - July 31 - August 03,
                  2011},
  pages        = {345--349},
  publisher    = {{ACM}},
  year         = {2011},
  url          = {https://doi.org/10.1145/2147805.2147848},
  doi          = {10.1145/2147805.2147848},
  timestamp    = {Mon, 05 Feb 2024 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/conf/bcb/SherminJO11.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bcb/ShiZ11,
  author       = {Lei Shi and
                  Aidong Zhang},
  editor       = {Robert Grossman and
                  Andrey Rzhetsky and
                  Sun Kim and
                  Wei Wang},
  title        = {An {ACO} based functional module detection algorithm for protein interaction
                  networks},
  booktitle    = {{ACM} International Conference on Bioinformatics, Computational Biology
                  and Biomedicine, BCB' 11, Chicago, IL, {USA} - July 31 - August 03,
                  2011},
  pages        = {360--365},
  publisher    = {{ACM}},
  year         = {2011},
  url          = {https://doi.org/10.1145/2147805.2147851},
  doi          = {10.1145/2147805.2147851},
  timestamp    = {Wed, 09 Sep 2020 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/conf/bcb/ShiZ11.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bcb/ShihP11,
  author       = {Yu{-}Keng Shih and
                  Srinivasan Parthasarathy},
  editor       = {Robert Grossman and
                  Andrey Rzhetsky and
                  Sun Kim and
                  Wei Wang},
  title        = {Scalable multiple global network alignment for biological data},
  booktitle    = {{ACM} International Conference on Bioinformatics, Computational Biology
                  and Biomedicine, BCB' 11, Chicago, IL, {USA} - July 31 - August 03,
                  2011},
  pages        = {96--105},
  publisher    = {{ACM}},
  year         = {2011},
  url          = {https://doi.org/10.1145/2147805.2147816},
  doi          = {10.1145/2147805.2147816},
  timestamp    = {Thu, 14 Oct 2021 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/conf/bcb/ShihP11.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bcb/ShonYYR11,
  author       = {Ho{-}Sun Shon and
                  Kyung{-}Sook Yang and
                  Che Woo Yoo and
                  Keun Ho Ryu},
  editor       = {Robert Grossman and
                  Andrey Rzhetsky and
                  Sun Kim and
                  Wei Wang},
  title        = {Feature selection method using {WF-LASSO} for gene expression data
                  analysis},
  booktitle    = {{ACM} International Conference on Bioinformatics, Computational Biology
                  and Biomedicine, BCB' 11, Chicago, IL, {USA} - July 31 - August 03,
                  2011},
  pages        = {522--524},
  publisher    = {{ACM}},
  year         = {2011},
  url          = {https://doi.org/10.1145/2147805.2147889},
  doi          = {10.1145/2147805.2147889},
  timestamp    = {Tue, 06 Nov 2018 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/conf/bcb/ShonYYR11.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bcb/SokolovB11,
  author       = {Artem Sokolov and
                  Asa Ben{-}Hur},
  editor       = {Robert Grossman and
                  Andrey Rzhetsky and
                  Sun Kim and
                  Wei Wang},
  title        = {Multi-view prediction of protein function},
  booktitle    = {{ACM} International Conference on Bioinformatics, Computational Biology
                  and Biomedicine, BCB' 11, Chicago, IL, {USA} - July 31 - August 03,
                  2011},
  pages        = {135--142},
  publisher    = {{ACM}},
  year         = {2011},
  url          = {https://doi.org/10.1145/2147805.2147820},
  doi          = {10.1145/2147805.2147820},
  timestamp    = {Sat, 24 Nov 2018 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/conf/bcb/SokolovB11.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bcb/SoniS11,
  author       = {Ameet Soni and
                  Jude W. Shavlik},
  editor       = {Robert Grossman and
                  Andrey Rzhetsky and
                  Sun Kim and
                  Wei Wang},
  title        = {Probabilistic ensembles for improved inference in protein-structure
                  determination},
  booktitle    = {{ACM} International Conference on Bioinformatics, Computational Biology
                  and Biomedicine, BCB' 11, Chicago, IL, {USA} - July 31 - August 03,
                  2011},
  pages        = {264--273},
  publisher    = {{ACM}},
  year         = {2011},
  url          = {https://doi.org/10.1145/2147805.2147834},
  doi          = {10.1145/2147805.2147834},
  timestamp    = {Tue, 06 Nov 2018 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/conf/bcb/SoniS11.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bcb/SprecherSKNWTLKH11,
  author       = {Emmett Sprecher and
                  Sudipa Sarkar and
                  Steven H. Kleinstein and
                  Murli Narayan and
                  Eric P. Winer and
                  David Tuck and
                  Kimberly Lezon{-}Geyda and
                  Ian Krop and
                  Lyndsay Harris},
  editor       = {Robert Grossman and
                  Andrey Rzhetsky and
                  Sun Kim and
                  Wei Wang},
  title        = {Association between response to brief trastuzumab exposure in cell
                  lines and early stage {HER2+} breast tumors},
  booktitle    = {{ACM} International Conference on Bioinformatics, Computational Biology
                  and Biomedicine, BCB' 11, Chicago, IL, {USA} - July 31 - August 03,
                  2011},
  pages        = {446--450},
  publisher    = {{ACM}},
  year         = {2011},
  url          = {https://doi.org/10.1145/2147805.2147867},
  doi          = {10.1145/2147805.2147867},
  timestamp    = {Tue, 06 Nov 2018 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/conf/bcb/SprecherSKNWTLKH11.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bcb/StokesMW11,
  author       = {Todd H. Stokes and
                  Richard A. Moffitt and
                  May D. Wang},
  editor       = {Robert Grossman and
                  Andrey Rzhetsky and
                  Sun Kim and
                  Wei Wang},
  title        = {SecureMed-ID: memorable and private identifiers for off-site access
                  to medical records},
  booktitle    = {{ACM} International Conference on Bioinformatics, Computational Biology
                  and Biomedicine, BCB' 11, Chicago, IL, {USA} - July 31 - August 03,
                  2011},
  pages        = {541--543},
  publisher    = {{ACM}},
  year         = {2011},
  url          = {https://doi.org/10.1145/2147805.2147894},
  doi          = {10.1145/2147805.2147894},
  timestamp    = {Fri, 09 Apr 2021 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/conf/bcb/StokesMW11.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bcb/SubramaniamNS11,
  author       = {Sabareesh Subramaniam and
                  Sriraam Natarajan and
                  Alessandro Senes},
  editor       = {Robert Grossman and
                  Andrey Rzhetsky and
                  Sun Kim and
                  Wei Wang},
  title        = {A machine learning based approach to improve sidechain optimization},
  booktitle    = {{ACM} International Conference on Bioinformatics, Computational Biology
                  and Biomedicine, BCB' 11, Chicago, IL, {USA} - July 31 - August 03,
                  2011},
  pages        = {478--480},
  publisher    = {{ACM}},
  year         = {2011},
  url          = {https://doi.org/10.1145/2147805.2147875},
  doi          = {10.1145/2147805.2147875},
  timestamp    = {Tue, 06 Nov 2018 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/conf/bcb/SubramaniamNS11.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bcb/SubramanianSS11,
  author       = {Ayshwarya Subramanian and
                  Stanley Shackney and
                  Russell Schwartz},
  editor       = {Robert Grossman and
                  Andrey Rzhetsky and
                  Sun Kim and
                  Wei Wang},
  title        = {Inference of tumor phylogenies from genomic assays on heterogeneous
                  samples},
  booktitle    = {{ACM} International Conference on Bioinformatics, Computational Biology
                  and Biomedicine, BCB' 11, Chicago, IL, {USA} - July 31 - August 03,
                  2011},
  pages        = {172--181},
  publisher    = {{ACM}},
  year         = {2011},
  url          = {https://doi.org/10.1145/2147805.2147824},
  doi          = {10.1145/2147805.2147824},
  timestamp    = {Sun, 02 Jun 2019 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/conf/bcb/SubramanianSS11.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bcb/TangW11,
  author       = {Yin Tang and
                  Fei Wang},
  editor       = {Robert Grossman and
                  Andrey Rzhetsky and
                  Sun Kim and
                  Wei Wang},
  title        = {Neural system modeling and simulation using hybrid functional Petri
                  net},
  booktitle    = {{ACM} International Conference on Bioinformatics, Computational Biology
                  and Biomedicine, BCB' 11, Chicago, IL, {USA} - July 31 - August 03,
                  2011},
  pages        = {49--58},
  publisher    = {{ACM}},
  year         = {2011},
  url          = {https://doi.org/10.1145/2147805.2147811},
  doi          = {10.1145/2147805.2147811},
  timestamp    = {Tue, 06 Nov 2018 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/conf/bcb/TangW11.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bcb/TianZSW11,
  author       = {Ye Tian and
                  Bai Zhang and
                  Ie{-}Ming Shih and
                  Yue Joseph Wang},
  editor       = {Robert Grossman and
                  Andrey Rzhetsky and
                  Sun Kim and
                  Wei Wang},
  title        = {Knowledge-guided differential dependency network learning for detecting
                  structural changes in biological networks},
  booktitle    = {{ACM} International Conference on Bioinformatics, Computational Biology
                  and Biomedicine, BCB' 11, Chicago, IL, {USA} - July 31 - August 03,
                  2011},
  pages        = {254--263},
  publisher    = {{ACM}},
  year         = {2011},
  url          = {https://doi.org/10.1145/2147805.2147833},
  doi          = {10.1145/2147805.2147833},
  timestamp    = {Tue, 06 Nov 2018 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/conf/bcb/TianZSW11.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bcb/ToussaintFZSK11,
  author       = {Nora C. Toussaint and
                  Magdalena Feldhahn and
                  Matthias Ziehm and
                  Stefan Stevanovic and
                  Oliver Kohlbacher},
  editor       = {Robert Grossman and
                  Andrey Rzhetsky and
                  Sun Kim and
                  Wei Wang},
  title        = {T-cell epitope prediction based on self-tolerance},
  booktitle    = {{ACM} International Conference on Bioinformatics, Computational Biology
                  and Biomedicine, BCB' 11, Chicago, IL, {USA} - July 31 - August 03,
                  2011},
  pages        = {584--588},
  publisher    = {{ACM}},
  year         = {2011},
  url          = {https://doi.org/10.1145/2147805.2147905},
  doi          = {10.1145/2147805.2147905},
  timestamp    = {Sat, 19 Oct 2019 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/conf/bcb/ToussaintFZSK11.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bcb/WagholikarTL11,
  author       = {Kavishwar B. Wagholikar and
                  Manabu Torii and
                  Hongfang Liu},
  editor       = {Robert Grossman and
                  Andrey Rzhetsky and
                  Sun Kim and
                  Wei Wang},
  title        = {Human gene/protein synonym dictionary from WikiLinks},
  booktitle    = {{ACM} International Conference on Bioinformatics, Computational Biology
                  and Biomedicine, BCB' 11, Chicago, IL, {USA} - July 31 - August 03,
                  2011},
  pages        = {462--464},
  publisher    = {{ACM}},
  year         = {2011},
  url          = {https://doi.org/10.1145/2147805.2147870},
  doi          = {10.1145/2147805.2147870},
  timestamp    = {Wed, 14 Nov 2018 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/conf/bcb/WagholikarTL11.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bcb/WangVM11,
  author       = {Jeremy W. Wang and
                  Fernando Pardo{-}Manuel de Villena and
                  Leonard McMillan},
  editor       = {Robert Grossman and
                  Andrey Rzhetsky and
                  Sun Kim and
                  Wei Wang},
  title        = {Dynamic visualization and comparative analysis of multiple collinear
                  genomic data},
  booktitle    = {{ACM} International Conference on Bioinformatics, Computational Biology
                  and Biomedicine, BCB' 11, Chicago, IL, {USA} - July 31 - August 03,
                  2011},
  pages        = {335--339},
  publisher    = {{ACM}},
  year         = {2011},
  url          = {https://doi.org/10.1145/2147805.2147846},
  doi          = {10.1145/2147805.2147846},
  timestamp    = {Sat, 30 Sep 2023 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/conf/bcb/WangVM11.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bcb/WongYHLHY11,
  author       = {Thomas K. F. Wong and
                  Hui{-}Ting Yu and
                  Bay{-}Yuan Hsu and
                  Tak Wah Lam and
                  Wing{-}Kai Hon and
                  Siu{-}Ming Yiu},
  editor       = {Robert Grossman and
                  Andrey Rzhetsky and
                  Sun Kim and
                  Wei Wang},
  title        = {Algorithms for pseudoknot classification},
  booktitle    = {{ACM} International Conference on Bioinformatics, Computational Biology
                  and Biomedicine, BCB' 11, Chicago, IL, {USA} - July 31 - August 03,
                  2011},
  pages        = {484--486},
  publisher    = {{ACM}},
  year         = {2011},
  url          = {https://doi.org/10.1145/2147805.2147877},
  doi          = {10.1145/2147805.2147877},
  timestamp    = {Wed, 14 Nov 2018 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/conf/bcb/WongYHLHY11.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bcb/WuTHS11,
  author       = {Jia Wu and
                  Raymond Tse and
                  Carrie Heike and
                  Linda G. Shapiro},
  editor       = {Robert Grossman and
                  Andrey Rzhetsky and
                  Sun Kim and
                  Wei Wang},
  title        = {Learning to compute the plane of symmetry for human faces},
  booktitle    = {{ACM} International Conference on Bioinformatics, Computational Biology
                  and Biomedicine, BCB' 11, Chicago, IL, {USA} - July 31 - August 03,
                  2011},
  pages        = {471--474},
  publisher    = {{ACM}},
  year         = {2011},
  url          = {https://doi.org/10.1145/2147805.2147873},
  doi          = {10.1145/2147805.2147873},
  timestamp    = {Sun, 25 Oct 2020 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/conf/bcb/WuTHS11.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bcb/XueJEDH11,
  author       = {Li C. Xue and
                  Rafael A. Jordan and
                  Yasser El{-}Manzalawy and
                  Drena Dobbs and
                  Vasant G. Honavar},
  editor       = {Robert Grossman and
                  Andrey Rzhetsky and
                  Sun Kim and
                  Wei Wang},
  title        = {Ranking docked models of protein-protein complexes using predicted
                  partner-specific protein-protein interfaces: a preliminary study},
  booktitle    = {{ACM} International Conference on Bioinformatics, Computational Biology
                  and Biomedicine, BCB' 11, Chicago, IL, {USA} - July 31 - August 03,
                  2011},
  pages        = {441--445},
  publisher    = {{ACM}},
  year         = {2011},
  url          = {https://doi.org/10.1145/2147805.2147866},
  doi          = {10.1145/2147805.2147866},
  timestamp    = {Wed, 14 Nov 2018 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/conf/bcb/XueJEDH11.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bcb/XueWEDH11,
  author       = {Li C. Xue and
                  Rasna R. Walia and
                  Yasser El{-}Manzalawy and
                  Drena Dobbs and
                  Vasant G. Honavar},
  editor       = {Robert Grossman and
                  Andrey Rzhetsky and
                  Sun Kim and
                  Wei Wang},
  title        = {Improving protein-RNA interface prediction by combining sequence homology
                  based method with a naive Bayes classifier: preliminary results},
  booktitle    = {{ACM} International Conference on Bioinformatics, Computational Biology
                  and Biomedicine, BCB' 11, Chicago, IL, {USA} - July 31 - August 03,
                  2011},
  pages        = {556--558},
  publisher    = {{ACM}},
  year         = {2011},
  url          = {https://doi.org/10.1145/2147805.2147899},
  doi          = {10.1145/2147805.2147899},
  timestamp    = {Wed, 14 Nov 2018 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/conf/bcb/XueWEDH11.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bcb/Yang11,
  author       = {Youngik Yang},
  editor       = {Robert Grossman and
                  Andrey Rzhetsky and
                  Sun Kim and
                  Wei Wang},
  title        = {A novel K-mer mixture logistic regression for methylation susceptibility
                  modeling of CpG dinucleotides in human gene promoters},
  booktitle    = {{ACM} International Conference on Bioinformatics, Computational Biology
                  and Biomedicine, BCB' 11, Chicago, IL, {USA} - July 31 - August 03,
                  2011},
  pages        = {366--370},
  publisher    = {{ACM}},
  year         = {2011},
  url          = {https://doi.org/10.1145/2147805.2147852},
  doi          = {10.1145/2147805.2147852},
  timestamp    = {Tue, 06 Nov 2018 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/conf/bcb/Yang11.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bcb/YangCO11,
  author       = {Lei Yang and
                  En Cheng and
                  Z. Meral {\"{O}}zsoyoglu},
  editor       = {Robert Grossman and
                  Andrey Rzhetsky and
                  Sun Kim and
                  Wei Wang},
  title        = {Using compact encodings for path-based computations on pedigree graphs},
  booktitle    = {{ACM} International Conference on Bioinformatics, Computational Biology
                  and Biomedicine, BCB' 11, Chicago, IL, {USA} - July 31 - August 03,
                  2011},
  pages        = {235--244},
  publisher    = {{ACM}},
  year         = {2011},
  url          = {https://doi.org/10.1145/2147805.2147831},
  doi          = {10.1145/2147805.2147831},
  timestamp    = {Tue, 06 Nov 2018 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/conf/bcb/YangCO11.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bcb/YangS11,
  author       = {Kuan Yang and
                  Jo{\~{a}}o Carlos Setubal},
  editor       = {Robert Grossman and
                  Andrey Rzhetsky and
                  Sun Kim and
                  Wei Wang},
  title        = {A whole genome simulator of prokaryote genome evolution},
  booktitle    = {{ACM} International Conference on Bioinformatics, Computational Biology
                  and Biomedicine, BCB' 11, Chicago, IL, {USA} - July 31 - August 03,
                  2011},
  pages        = {508--510},
  publisher    = {{ACM}},
  year         = {2011},
  url          = {https://doi.org/10.1145/2147805.2147885},
  doi          = {10.1145/2147805.2147885},
  timestamp    = {Sat, 09 Apr 2022 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/conf/bcb/YangS11.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bcb/YangSCSL11,
  author       = {Shulin Yang and
                  Linda G. Shapiro and
                  Michael L. Cunningham and
                  Matthew L. Speltz and
                  Su{-}In Lee},
  editor       = {Robert Grossman and
                  Andrey Rzhetsky and
                  Sun Kim and
                  Wei Wang},
  title        = {Classification and feature selection for craniosynostosis},
  booktitle    = {{ACM} International Conference on Bioinformatics, Computational Biology
                  and Biomedicine, BCB' 11, Chicago, IL, {USA} - July 31 - August 03,
                  2011},
  pages        = {340--344},
  publisher    = {{ACM}},
  year         = {2011},
  url          = {https://doi.org/10.1145/2147805.2147847},
  doi          = {10.1145/2147805.2147847},
  timestamp    = {Tue, 06 Nov 2018 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/conf/bcb/YangSCSL11.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bcb/ZhangBLOHB11,
  author       = {Guanglan Zhang and
                  Melisa L. Budde and
                  Jennifer J. Lhost and
                  David H. O'Connor and
                  William H. Hildebrand and
                  Vladimir Brusic},
  editor       = {Robert Grossman and
                  Andrey Rzhetsky and
                  Sun Kim and
                  Wei Wang},
  title        = {PRED\({}^{\mbox{mafa}}\): a system for prediction of peptide binding
                  to several {MHC} class {I} molecules in cynomolgus macaques},
  booktitle    = {{ACM} International Conference on Bioinformatics, Computational Biology
                  and Biomedicine, BCB' 11, Chicago, IL, {USA} - July 31 - August 03,
                  2011},
  pages        = {602--606},
  publisher    = {{ACM}},
  year         = {2011},
  url          = {https://doi.org/10.1145/2147805.2147908},
  doi          = {10.1145/2147805.2147908},
  timestamp    = {Sat, 30 Sep 2023 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/conf/bcb/ZhangBLOHB11.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bcb/ZhangFFSZ11,
  author       = {Changjiang Zhang and
                  Kimberly Forsten{-}Williams and
                  Michael Fannon and
                  Wensheng Shen and
                  Jun Zhang},
  editor       = {Robert Grossman and
                  Andrey Rzhetsky and
                  Sun Kim and
                  Wei Wang},
  title        = {Parallel simulation of multiple proteins through a bioreactor coupled
                  with biochemical reactions},
  booktitle    = {{ACM} International Conference on Bioinformatics, Computational Biology
                  and Biomedicine, BCB' 11, Chicago, IL, {USA} - July 31 - August 03,
                  2011},
  pages        = {20--28},
  publisher    = {{ACM}},
  year         = {2011},
  url          = {https://doi.org/10.1145/2147805.2147808},
  doi          = {10.1145/2147805.2147808},
  timestamp    = {Tue, 06 Nov 2018 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/conf/bcb/ZhangFFSZ11.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bcb/ZhouP11,
  author       = {Jie Zhou and
                  Hanchuan Peng},
  editor       = {Robert Grossman and
                  Andrey Rzhetsky and
                  Sun Kim and
                  Wei Wang},
  title        = {Counting cells in 3D confocal images based on discriminative models},
  booktitle    = {{ACM} International Conference on Bioinformatics, Computational Biology
                  and Biomedicine, BCB' 11, Chicago, IL, {USA} - July 31 - August 03,
                  2011},
  pages        = {399--403},
  publisher    = {{ACM}},
  year         = {2011},
  url          = {https://doi.org/10.1145/2147805.2147858},
  doi          = {10.1145/2147805.2147858},
  timestamp    = {Tue, 01 Dec 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/conf/bcb/ZhouP11.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@proceedings{DBLP:conf/bcb/2011,
  editor       = {Robert Grossman and
                  Andrey Rzhetsky and
                  Sun Kim and
                  Wei Wang},
  title        = {{ACM} International Conference on Bioinformatics, Computational Biology
                  and Biomedicine, BCB' 11, Chicago, IL, {USA} - July 31 - August 03,
                  2011},
  publisher    = {{ACM}},
  year         = {2011},
  url          = {http://dl.acm.org/citation.cfm?id=2147805},
  isbn         = {978-1-4503-0796-3},
  timestamp    = {Sun, 11 Nov 2012 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/conf/bcb/2011.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}