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@article{DBLP:journals/tcsb/AndreiC12,
author = {Oana Andrei and
Muffy Calder},
title = {Trend-Based Analysis of a Population Model of the {AKAP} Scaffold
Protein},
journal = {Trans. Comp. Sys. Biology},
volume = {14},
pages = {1--25},
year = {2012},
url = {https://doi.org/10.1007/978-3-642-35524-0\_1},
doi = {10.1007/978-3-642-35524-0\_1},
timestamp = {Thu, 14 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcsb/AndreiC12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcsb/AngiusHW12,
author = {Alessio Angius and
Andr{\'{a}}s Horv{\'{a}}th and
Verena Wolf},
title = {Quasi Product Form Approximation for Markov Models of Reaction Networks},
journal = {Trans. Comp. Sys. Biology},
volume = {14},
pages = {26--52},
year = {2012},
url = {https://doi.org/10.1007/978-3-642-35524-0\_2},
doi = {10.1007/978-3-642-35524-0\_2},
timestamp = {Thu, 14 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcsb/AngiusHW12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcsb/BartocciLMP12,
author = {Ezio Bartocci and
Pietro Li{\`{o}} and
Emanuela Merelli and
Nicola Paoletti},
title = {Multiple Verification in Complex Biological Systems: The Bone Remodelling
Case Study},
journal = {Trans. Comp. Sys. Biology},
volume = {14},
pages = {53--76},
year = {2012},
url = {https://doi.org/10.1007/978-3-642-35524-0\_3},
doi = {10.1007/978-3-642-35524-0\_3},
timestamp = {Thu, 14 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcsb/BartocciLMP12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcsb/BrimFDS12,
author = {Lubos Brim and
Jana Fabrikov{\'{a}} and
Sven Drazan and
David Safr{\'{a}}nek},
title = {On Approximative Reachability Analysis of Biochemical Dynamical Systems},
journal = {Trans. Comp. Sys. Biology},
volume = {14},
pages = {77--101},
year = {2012},
url = {https://doi.org/10.1007/978-3-642-35524-0\_4},
doi = {10.1007/978-3-642-35524-0\_4},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcsb/BrimFDS12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcsb/EhrenfeuchtKKR12,
author = {Andrzej Ehrenfeucht and
Jetty Kleijn and
Maciej Koutny and
Grzegorz Rozenberg},
title = {Minimal Reaction Systems},
journal = {Trans. Comp. Sys. Biology},
volume = {14},
pages = {102--122},
year = {2012},
url = {https://doi.org/10.1007/978-3-642-35524-0\_5},
doi = {10.1007/978-3-642-35524-0\_5},
timestamp = {Thu, 14 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcsb/EhrenfeuchtKKR12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcsb/MizeraCP12,
author = {Andrzej Mizera and
Eugen Czeizler and
Ion Petre},
title = {Self-assembly Models of Variable Resolution},
journal = {Trans. Comp. Sys. Biology},
volume = {14},
pages = {181--203},
year = {2012},
url = {https://doi.org/10.1007/978-3-642-35524-0\_8},
doi = {10.1007/978-3-642-35524-0\_8},
timestamp = {Tue, 21 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/tcsb/MizeraCP12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcsb/VersariZ12,
author = {Cristian Versari and
Gianluigi Zavattaro},
title = {Complex Functional Rates in Rule-Based Languages for Biochemistry},
journal = {Trans. Comp. Sys. Biology},
volume = {14},
pages = {123--150},
year = {2012},
url = {https://doi.org/10.1007/978-3-642-35524-0\_6},
doi = {10.1007/978-3-642-35524-0\_6},
timestamp = {Thu, 14 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcsb/VersariZ12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcsb/Wallace12,
author = {Rodrick Wallace},
title = {Metabolic Constraints on the Evolution of Genetic Codes: Did Multiple
Preaerobic' Ecosystem Transitions Entrain Richer Dialects via Serial
Endosymbiosis?},
journal = {Trans. Comp. Sys. Biology},
volume = {14},
pages = {204--232},
year = {2012},
url = {https://doi.org/10.1007/978-3-642-35524-0\_9},
doi = {10.1007/978-3-642-35524-0\_9},
timestamp = {Thu, 14 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcsb/Wallace12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcsb/YuanTPMWS12,
author = {Qixia Yuan and
Panuwat Trairatphisan and
Jun Pang and
Sjouke Mauw and
Monique Wiesinger and
Thomas Sauter},
title = {Probabilistic Model Checking of the {PDGF} Signaling Pathway},
journal = {Trans. Comp. Sys. Biology},
volume = {14},
pages = {151--180},
year = {2012},
url = {https://doi.org/10.1007/978-3-642-35524-0\_7},
doi = {10.1007/978-3-642-35524-0\_7},
timestamp = {Thu, 14 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcsb/YuanTPMWS12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@proceedings{DBLP:journals/tcsb/2012-14,
editor = {Corrado Priami and
Ion Petre and
Erik P. de Vink},
title = {Transactions on Computational Systems Biology {XIV} - Special Issue
on Computational Models for Cell Processes},
series = {Lecture Notes in Computer Science},
volume = {7625},
publisher = {Springer},
year = {2012},
url = {https://doi.org/10.1007/978-3-642-35524-0},
doi = {10.1007/978-3-642-35524-0},
isbn = {978-3-642-35523-3},
timestamp = {Tue, 14 May 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcsb/2012-14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcsb/BarbutiCMM11,
author = {Roberto Barbuti and
Giulio Caravagna and
Andrea Maggiolo{-}Schettini and
Paolo Milazzo},
title = {Delay Stochastic Simulation of Biological Systems: {A} Purely Delayed
Approach},
journal = {Trans. Comp. Sys. Biology},
volume = {13},
pages = {61--84},
year = {2011},
url = {https://doi.org/10.1007/978-3-642-19748-2\_4},
doi = {10.1007/978-3-642-19748-2\_4},
timestamp = {Thu, 14 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcsb/BarbutiCMM11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcsb/CoppoDDGGT11,
author = {Mario Coppo and
Ferruccio Damiani and
Maurizio Drocco and
Elena Grassi and
Mike Guether and
Angelo Troina},
title = {Modelling Ammonium Transporters in Arbuscular Mycorrhiza Symbiosis},
journal = {Trans. Comp. Sys. Biology},
volume = {13},
pages = {85--109},
year = {2011},
url = {https://doi.org/10.1007/978-3-642-19748-2\_5},
doi = {10.1007/978-3-642-19748-2\_5},
timestamp = {Thu, 14 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcsb/CoppoDDGGT11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcsb/GoldsteinW11,
author = {Rhys Goldstein and
Gabriel A. Wainer},
title = {Impulse-Based Dynamic Simulation of Deformable Biological Structures},
journal = {Trans. Comp. Sys. Biology},
volume = {13},
pages = {39--60},
year = {2011},
url = {https://doi.org/10.1007/978-3-642-19748-2\_3},
doi = {10.1007/978-3-642-19748-2\_3},
timestamp = {Thu, 14 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcsb/GoldsteinW11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcsb/HakkinenBSYR11,
author = {Antti H{\"{a}}kkinen and
Fred G. Biddle and
Olli{-}Pekka Smolander and
Olli Yli{-}Harja and
Andre S. Ribeiro},
title = {Evolutionary Dynamics of a Population of Cells with a Toxin Suppressor
Gene},
journal = {Trans. Comp. Sys. Biology},
volume = {13},
pages = {1--12},
year = {2011},
url = {https://doi.org/10.1007/978-3-642-19748-2\_1},
doi = {10.1007/978-3-642-19748-2\_1},
timestamp = {Sat, 09 Apr 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcsb/HakkinenBSYR11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcsb/LoeweGWMGH11,
author = {Laurence Loewe and
Maria Luisa Guerriero and
Steven Watterson and
Stuart L. Moodie and
Peter Ghazal and
Jane Hillston},
title = {Translation from the Quantified Implicit Process Flow Abstraction
in {SBGN-PD} Diagrams to Bio-PEPA Illustrated on the Cholesterol Pathway},
journal = {Trans. Comp. Sys. Biology},
volume = {13},
pages = {13--38},
year = {2011},
url = {https://doi.org/10.1007/978-3-642-19748-2\_2},
doi = {10.1007/978-3-642-19748-2\_2},
timestamp = {Thu, 14 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcsb/LoeweGWMGH11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcsb/PauleveMR11,
author = {Lo{\"{\i}}c Paulev{\'{e}} and
Morgan Magnin and
Olivier F. Roux},
title = {Refining Dynamics of Gene Regulatory Networks in a Stochastic p-Calculus
Framework},
journal = {Trans. Comp. Sys. Biology},
volume = {13},
pages = {171--191},
year = {2011},
url = {https://doi.org/10.1007/978-3-642-19748-2\_8},
doi = {10.1007/978-3-642-19748-2\_8},
timestamp = {Thu, 14 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcsb/PauleveMR11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcsb/RadulescuSPCL11,
author = {Ovidiu Radulescu and
Anne Siegel and
Elisabeth P{\'{e}}cou and
Cl{\'{e}}ment Chatelain and
Sandrine Lagarrigue},
title = {Genetically Regulated Metabolic Networks: Gale-Nikaido Modules and
Differential Inequalities},
journal = {Trans. Comp. Sys. Biology},
volume = {13},
pages = {110--130},
year = {2011},
url = {https://doi.org/10.1007/978-3-642-19748-2\_6},
doi = {10.1007/978-3-642-19748-2\_6},
timestamp = {Thu, 14 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcsb/RadulescuSPCL11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcsb/WallaceW11,
author = {Rodrick Wallace and
Deborah Wallace},
title = {Cultural Epigenetics: On the Heritability of Complex Diseases},
journal = {Trans. Comp. Sys. Biology},
volume = {13},
pages = {131--170},
year = {2011},
url = {https://doi.org/10.1007/978-3-642-19748-2\_7},
doi = {10.1007/978-3-642-19748-2\_7},
timestamp = {Thu, 14 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcsb/WallaceW11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@proceedings{DBLP:journals/tcsb/2011-13,
editor = {Corrado Priami and
Ralph{-}Johan Back and
Ion Petre and
Erik P. de Vink},
title = {Transactions on Computational Systems Biology {XIII}},
series = {Lecture Notes in Computer Science},
volume = {6575},
publisher = {Springer},
year = {2011},
url = {https://doi.org/10.1007/978-3-642-19748-2},
doi = {10.1007/978-3-642-19748-2},
isbn = {978-3-642-19747-5},
timestamp = {Tue, 14 May 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcsb/2011-13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcsb/BeyerTLSF10,
author = {Antje Beyer and
Peter Thomason and
Xinzhong Li and
James Scott and
Jasmin Fisher},
title = {Mechanistic Insights into Metabolic Disturbance during Type-2 Diabetes
and Obesity Using Qualitative Networks},
journal = {Trans. Comp. Sys. Biology},
volume = {12},
pages = {146--162},
year = {2010},
url = {https://doi.org/10.1007/978-3-642-11712-1\_4},
doi = {10.1007/978-3-642-11712-1\_4},
timestamp = {Thu, 14 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcsb/BeyerTLSF10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcsb/BreitlingDGH10,
author = {Rainer Breitling and
Robin Donaldson and
David R. Gilbert and
Monika Heiner},
title = {Biomodel Engineering - From Structure to Behavior},
journal = {Trans. Comp. Sys. Biology},
volume = {12},
pages = {1--12},
year = {2010},
url = {https://doi.org/10.1007/978-3-642-11712-1\_1},
doi = {10.1007/978-3-642-11712-1\_1},
timestamp = {Thu, 14 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcsb/BreitlingDGH10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcsb/CiocchettaDHH10,
author = {Federica Ciocchetta and
Andrea Degasperi and
John K. Heath and
Jane Hillston},
title = {Modelling and Analysis of the NF-\emph{kappa}B Pathway in Bio-PEPA},
journal = {Trans. Comp. Sys. Biology},
volume = {12},
pages = {229--262},
year = {2010},
url = {https://doi.org/10.1007/978-3-642-11712-1\_7},
doi = {10.1007/978-3-642-11712-1\_7},
timestamp = {Thu, 14 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcsb/CiocchettaDHH10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcsb/JohnLNU10,
author = {Mathias John and
C{\'{e}}dric Lhoussaine and
Joachim Niehren and
Adelinde M. Uhrmacher},
title = {The Attributed Pi-Calculus with Priorities},
journal = {Trans. Comp. Sys. Biology},
volume = {12},
pages = {13--76},
year = {2010},
url = {https://doi.org/10.1007/978-3-642-11712-1\_2},
doi = {10.1007/978-3-642-11712-1\_2},
timestamp = {Thu, 14 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcsb/JohnLNU10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcsb/KuttlerLN10,
author = {C{\'{e}}line Kuttler and
C{\'{e}}dric Lhoussaine and
Mirabelle Nebut},
title = {Rule-Based Modeling of Transcriptional Attenuation at the Tryptophan
Operon},
journal = {Trans. Comp. Sys. Biology},
volume = {12},
pages = {199--228},
year = {2010},
url = {https://doi.org/10.1007/978-3-642-11712-1\_6},
doi = {10.1007/978-3-642-11712-1\_6},
timestamp = {Thu, 14 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcsb/KuttlerLN10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcsb/LarcherPR10,
author = {Roberto Larcher and
Corrado Priami and
Alessandro Romanel},
title = {Modelling Self-assembly in BlenX},
journal = {Trans. Comp. Sys. Biology},
volume = {12},
pages = {163--198},
year = {2010},
url = {https://doi.org/10.1007/978-3-642-11712-1\_5},
doi = {10.1007/978-3-642-11712-1\_5},
timestamp = {Thu, 14 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcsb/LarcherPR10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcsb/PedersenP10,
author = {Michael Pedersen and
Gordon D. Plotkin},
title = {A Language for Biochemical Systems: Design and Formal Specification},
journal = {Trans. Comp. Sys. Biology},
volume = {12},
pages = {77--145},
year = {2010},
url = {https://doi.org/10.1007/978-3-642-11712-1\_3},
doi = {10.1007/978-3-642-11712-1\_3},
timestamp = {Thu, 14 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcsb/PedersenP10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@proceedings{DBLP:journals/tcsb/2010-12,
editor = {Corrado Priami and
Rainer Breitling and
David R. Gilbert and
Monika Heiner and
Adelinde M. Uhrmacher},
title = {Transactions on Computational Systems Biology XII, Special Issue on
Modeling Methodologies},
series = {Lecture Notes in Computer Science},
volume = {5945},
publisher = {Springer},
year = {2010},
url = {https://doi.org/10.1007/978-3-642-11712-1},
doi = {10.1007/978-3-642-11712-1},
isbn = {978-3-642-11711-4},
timestamp = {Tue, 14 May 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcsb/2010-12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcsb/AmanC09,
author = {Bogdan Aman and
Gabriel Ciobanu},
title = {Simple, Enhanced and Mutual Mobile Membranes},
journal = {Trans. Comp. Sys. Biology},
volume = {11},
pages = {26--44},
year = {2009},
url = {https://doi.org/10.1007/978-3-642-04186-0\_2},
doi = {10.1007/978-3-642-04186-0\_2},
timestamp = {Thu, 14 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcsb/AmanC09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcsb/BortolussiP09,
author = {Luca Bortolussi and
Alberto Policriti},
title = {Dynamical Systems and Stochastic Programming: To Ordinary Differential
Equations and Back},
journal = {Trans. Comp. Sys. Biology},
volume = {11},
pages = {216--267},
year = {2009},
url = {https://doi.org/10.1007/978-3-642-04186-0\_11},
doi = {10.1007/978-3-642-04186-0\_11},
timestamp = {Tue, 29 Dec 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/tcsb/BortolussiP09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcsb/BosnackiPV09,
author = {Dragan Bosnacki and
Tessa E. Pronk and
Erik P. de Vink},
title = {\emph{In Silico} Modelling and Analysis of Ribosome Kinetics and aa-tRNA
Competition},
journal = {Trans. Comp. Sys. Biology},
volume = {11},
pages = {69--89},
year = {2009},
url = {https://doi.org/10.1007/978-3-642-04186-0\_4},
doi = {10.1007/978-3-642-04186-0\_4},
timestamp = {Thu, 14 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcsb/BosnackiPV09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcsb/CalderH09,
author = {Muffy Calder and
Jane Hillston},
title = {Process Algebra Modelling Styles for Biomolecular Processes},
journal = {Trans. Comp. Sys. Biology},
volume = {11},
pages = {1--25},
year = {2009},
url = {https://doi.org/10.1007/978-3-642-04186-0\_1},
doi = {10.1007/978-3-642-04186-0\_1},
timestamp = {Thu, 14 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcsb/CalderH09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcsb/Chesi09,
author = {Graziano Chesi},
title = {Computing Equilibrium Points of Genetic Regulatory Networks},
journal = {Trans. Comp. Sys. Biology},
volume = {11},
pages = {268--282},
year = {2009},
url = {https://doi.org/10.1007/978-3-642-04186-0\_12},
doi = {10.1007/978-3-642-04186-0\_12},
timestamp = {Thu, 14 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcsb/Chesi09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcsb/Ciocchetta09,
author = {Federica Ciocchetta},
title = {Bio-PEPA with Events},
journal = {Trans. Comp. Sys. Biology},
volume = {11},
pages = {45--68},
year = {2009},
url = {https://doi.org/10.1007/978-3-642-04186-0\_3},
doi = {10.1007/978-3-642-04186-0\_3},
timestamp = {Thu, 14 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcsb/Ciocchetta09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcsb/DanosFFHK09,
author = {Vincent Danos and
J{\'{e}}r{\^{o}}me Feret and
Walter Fontana and
Russell Harmer and
Jean Krivine},
title = {Rule-Based Modelling and Model Perturbation},
journal = {Trans. Comp. Sys. Biology},
volume = {11},
pages = {116--137},
year = {2009},
url = {https://doi.org/10.1007/978-3-642-04186-0\_6},
doi = {10.1007/978-3-642-04186-0\_6},
timestamp = {Thu, 14 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcsb/DanosFFHK09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcsb/DassowM09,
author = {J{\"{u}}rgen Dassow and
Victor Mitrana},
title = {Accepting Networks of Non-inserting Evolutionary Processors},
journal = {Trans. Comp. Sys. Biology},
volume = {11},
pages = {187--199},
year = {2009},
url = {https://doi.org/10.1007/978-3-642-04186-0\_9},
doi = {10.1007/978-3-642-04186-0\_9},
timestamp = {Thu, 14 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcsb/DassowM09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcsb/DavidBM09,
author = {Maria Pamela C. David and
Johnrob Y. Bantang and
Eduardo R. Mendoza},
title = {A Projective Brane Calculus with Activate, Bud and Mate as Primitive
Actions},
journal = {Trans. Comp. Sys. Biology},
volume = {11},
pages = {164--186},
year = {2009},
url = {https://doi.org/10.1007/978-3-642-04186-0\_8},
doi = {10.1007/978-3-642-04186-0\_8},
timestamp = {Thu, 14 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcsb/DavidBM09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcsb/Guerriero09,
author = {Maria Luisa Guerriero},
title = {Qualitative and Quantitative Analysis of a Bio-PEPA Model of the Gp130/JAK/STAT
Signalling Pathway},
journal = {Trans. Comp. Sys. Biology},
volume = {11},
pages = {90--115},
year = {2009},
url = {https://doi.org/10.1007/978-3-642-04186-0\_5},
doi = {10.1007/978-3-642-04186-0\_5},
timestamp = {Thu, 14 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcsb/Guerriero09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcsb/HeinerLGM09,
author = {Monika Heiner and
Sebastian Lehrack and
David R. Gilbert and
Wolfgang Marwan},
title = {Extended Stochastic Petri Nets for Model-Based Design of Wetlab Experiments},
journal = {Trans. Comp. Sys. Biology},
volume = {11},
pages = {138--163},
year = {2009},
url = {https://doi.org/10.1007/978-3-642-04186-0\_7},
doi = {10.1007/978-3-642-04186-0\_7},
timestamp = {Thu, 14 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcsb/HeinerLGM09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcsb/JackP09,
author = {John Jack and
Andrei Paun},
title = {Discrete Modeling of Biochemical Signaling with Memory Enhancement},
journal = {Trans. Comp. Sys. Biology},
volume = {11},
pages = {200--215},
year = {2009},
url = {https://doi.org/10.1007/978-3-642-04186-0\_10},
doi = {10.1007/978-3-642-04186-0\_10},
timestamp = {Thu, 14 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcsb/JackP09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcsb/WallaceW09,
author = {Rodrick Wallace and
Deborah Wallace},
title = {Code, Context, and Epigenetic Catalysis in Gene Expression},
journal = {Trans. Comp. Sys. Biology},
volume = {11},
pages = {283--334},
year = {2009},
url = {https://doi.org/10.1007/978-3-642-04186-0\_13},
doi = {10.1007/978-3-642-04186-0\_13},
timestamp = {Thu, 14 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcsb/WallaceW09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@proceedings{DBLP:journals/tcsb/2009-11,
editor = {Corrado Priami and
Ralph{-}Johan Back and
Ion Petre},
title = {Transactions on Computational Systems Biology {XI}},
series = {Lecture Notes in Computer Science},
volume = {5750},
publisher = {Springer},
year = {2009},
url = {https://doi.org/10.1007/978-3-642-04186-0},
doi = {10.1007/978-3-642-04186-0},
isbn = {978-3-642-04185-3},
timestamp = {Tue, 14 May 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcsb/2009-11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcsb/AtakanA08,
author = {Baris Atakan and
{\"{O}}zg{\"{u}}r B. Akan},
title = {On Channel Capacity and Error Compensation in Molecular Communication},
journal = {Trans. Comp. Sys. Biology},
volume = {10},
pages = {59--80},
year = {2008},
url = {https://doi.org/10.1007/978-3-540-92273-5\_4},
doi = {10.1007/978-3-540-92273-5\_4},
timestamp = {Thu, 14 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcsb/AtakanA08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcsb/BarbutiMMTT08,
author = {Roberto Barbuti and
Andrea Maggiolo{-}Schettini and
Paolo Milazzo and
Paolo Tiberi and
Angelo Troina},
title = {Stochastic Calculus of Looping Sequences for the Modelling and Simulation
of Cellular Pathways},
journal = {Trans. Comp. Sys. Biology},
volume = {9},
pages = {86--113},
year = {2008},
url = {https://doi.org/10.1007/978-3-540-88765-2\_3},
doi = {10.1007/978-3-540-88765-2\_3},
timestamp = {Thu, 14 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcsb/BarbutiMMTT08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcsb/ChopraB08,
author = {Paras Chopra and
Andreas Bender},
title = {A Quantitative \emph{bgl} Operon Model for \emph{E. coli} Requires
BglF Conformational Change for Sugar Transport},
journal = {Trans. Comp. Sys. Biology},
volume = {9},
pages = {1--22},
year = {2008},
url = {https://doi.org/10.1007/978-3-540-88765-2\_1},
doi = {10.1007/978-3-540-88765-2\_1},
timestamp = {Thu, 14 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcsb/ChopraB08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcsb/Ciocchetta08,
author = {Federica Ciocchetta},
title = {The BlenX Language with Biological Transactions},
journal = {Trans. Comp. Sys. Biology},
volume = {9},
pages = {114--152},
year = {2008},
url = {https://doi.org/10.1007/978-3-540-88765-2\_4},
doi = {10.1007/978-3-540-88765-2\_4},
timestamp = {Thu, 14 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcsb/Ciocchetta08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcsb/DubrovaTT08,
author = {Elena Dubrova and
Maxim Teslenko and
Hannu Tenhunen},
title = {A Computational Scheme Based on Random Boolean Networks},
journal = {Trans. Comp. Sys. Biology},
volume = {10},
pages = {41--58},
year = {2008},
url = {https://doi.org/10.1007/978-3-540-92273-5\_3},
doi = {10.1007/978-3-540-92273-5\_3},
timestamp = {Thu, 14 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcsb/DubrovaTT08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcsb/ForestieroMPS08,
author = {Agostino Forestiero and
Carlo Mastroianni and
Giuseppe Papuzzo and
Giandomenico Spezzano},
title = {Towards a Self-structured Grid: An Ant-Inspired {P2P} Algorithm},
journal = {Trans. Comp. Sys. Biology},
volume = {10},
pages = {1--19},
year = {2008},
url = {https://doi.org/10.1007/978-3-540-92273-5\_1},
doi = {10.1007/978-3-540-92273-5\_1},
timestamp = {Mon, 05 Feb 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/tcsb/ForestieroMPS08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcsb/MeyerSTY08,
author = {Thomas Meyer and
Daniel Schreckling and
Christian F. Tschudin and
Lidia Yamamoto},
title = {Robustness to Code and Data Deletion in Autocatalytic Quines},
journal = {Trans. Comp. Sys. Biology},
volume = {10},
pages = {20--40},
year = {2008},
url = {https://doi.org/10.1007/978-3-540-92273-5\_2},
doi = {10.1007/978-3-540-92273-5\_2},
timestamp = {Thu, 14 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcsb/MeyerSTY08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcsb/RuedaBN08,
author = {Luis Rueda and
Ataul Bari and
Alioune Ngom},
title = {Clustering Time-Series Gene Expression Data with Unequal Time Intervals},
journal = {Trans. Comp. Sys. Biology},
volume = {10},
pages = {100--123},
year = {2008},
url = {https://doi.org/10.1007/978-3-540-92273-5\_6},
doi = {10.1007/978-3-540-92273-5\_6},
timestamp = {Wed, 08 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/tcsb/RuedaBN08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcsb/SegataB08,
author = {Nicola Segata and
Enrico Blanzieri},
title = {Stochastic \emph{pi}-Calculus Modelling of Multisite Phosphorylation
Based Signaling: The {PHO} Pathway in Saccharomyces Cerevisiae},
journal = {Trans. Comp. Sys. Biology},
volume = {10},
pages = {163--196},
year = {2008},
url = {https://doi.org/10.1007/978-3-540-92273-5\_9},
doi = {10.1007/978-3-540-92273-5\_9},
timestamp = {Sat, 09 Apr 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcsb/SegataB08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcsb/SmithW08,
author = {Scott F. Smith and
Kay C. Wiese},
title = {Integrating Thermodynamic and Observed-Frequency Data for Non-coding
{RNA} Gene Search},
journal = {Trans. Comp. Sys. Biology},
volume = {10},
pages = {124--142},
year = {2008},
url = {https://doi.org/10.1007/978-3-540-92273-5\_7},
doi = {10.1007/978-3-540-92273-5\_7},
timestamp = {Thu, 14 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcsb/SmithW08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcsb/WallaceW08,
author = {Rodrick Wallace and
Deborah Wallace},
title = {Punctuated Equilibrium in Statistical Models of Generalized Coevolutionary
Resilience: How Sudden Ecosystem Transitions Can Entrain Both Phenotype
Expression and Darwinian Selection},
journal = {Trans. Comp. Sys. Biology},
volume = {9},
pages = {23--85},
year = {2008},
url = {https://doi.org/10.1007/978-3-540-88765-2\_2},
doi = {10.1007/978-3-540-88765-2\_2},
timestamp = {Thu, 14 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcsb/WallaceW08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcsb/WangNGR08,
author = {Lili Wang and
Alioune Ngom and
Robin Gras and
Luis Rueda},
title = {An Evolutionary Approach to the Non-unique Oligonucleotide Probe Selection
Problem},
journal = {Trans. Comp. Sys. Biology},
volume = {10},
pages = {143--162},
year = {2008},
url = {https://doi.org/10.1007/978-3-540-92273-5\_8},
doi = {10.1007/978-3-540-92273-5\_8},
timestamp = {Wed, 08 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/tcsb/WangNGR08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@proceedings{DBLP:journals/tcsb/2008-10,
editor = {Corrado Priami and
Falko Dressler and
{\"{O}}zg{\"{u}}r B. Akan and
Alioune Ngom},
title = {Transactions on Computational Systems Biology {X}},
series = {Lecture Notes in Computer Science},
volume = {5410},
publisher = {Springer},
year = {2008},
url = {https://doi.org/10.1007/978-3-540-92273-5},
doi = {10.1007/978-3-540-92273-5},
isbn = {978-3-540-92272-8},
timestamp = {Tue, 14 May 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcsb/2008-10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@proceedings{DBLP:journals/tcsb/2008-9,
editor = {Corrado Priami},
title = {Transactions on Computational Systems Biology {IX}},
series = {Lecture Notes in Computer Science},
volume = {5121},
publisher = {Springer},
year = {2008},
url = {https://doi.org/10.1007/978-3-540-88765-2},
doi = {10.1007/978-3-540-88765-2},
isbn = {978-3-540-88764-5},
timestamp = {Tue, 14 May 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcsb/2008-9.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcsb/AnalouiJ07,
author = {Morteza Analoui and
Shahram Jamali},
title = {Equation-Based Congestion Control in the Internet Biologic Environment},
journal = {Trans. Comp. Sys. Biology},
volume = {8},
pages = {42--62},
year = {2007},
url = {https://doi.org/10.1007/978-3-540-76639-1\_3},
doi = {10.1007/978-3-540-76639-1\_3},
timestamp = {Thu, 14 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcsb/AnalouiJ07.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcsb/Dressler07,
author = {Falko Dressler},
title = {Bio-inspired Network-Centric Operation and Control for Sensor/Actuator
Networks},
journal = {Trans. Comp. Sys. Biology},
volume = {8},
pages = {1--13},
year = {2007},
url = {https://doi.org/10.1007/978-3-540-76639-1\_1},
doi = {10.1007/978-3-540-76639-1\_1},
timestamp = {Thu, 14 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcsb/Dressler07.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcsb/GhoshGBD07,
author = {Preetam Ghosh and
Samik Ghosh and
Kalyan Basu and
Sajal K. Das},
title = {A Computationally Fast and Parametric Model to Estimate Protein-Ligand
Docking Time for Stochastic Event Based Simulation},
journal = {Trans. Comp. Sys. Biology},
volume = {8},
pages = {14--41},
year = {2007},
url = {https://doi.org/10.1007/978-3-540-76639-1\_2},
doi = {10.1007/978-3-540-76639-1\_2},
timestamp = {Thu, 14 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcsb/GhoshGBD07.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcsb/Priami07,
author = {Corrado Priami},
title = {Computational Thinking in Biology},
journal = {Trans. Comp. Sys. Biology},
volume = {8},
pages = {63--76},
year = {2007},
url = {https://doi.org/10.1007/978-3-540-76639-1\_4},
doi = {10.1007/978-3-540-76639-1\_4},
timestamp = {Thu, 14 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcsb/Priami07.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcsb/RemyR07,
author = {Elisabeth Remy and
Paul Ruet},
title = {On Differentiation and Homeostatic Behaviours of Boolean Dynamical
Systems},
journal = {Trans. Comp. Sys. Biology},
volume = {8},
pages = {92--101},
year = {2007},
url = {https://doi.org/10.1007/978-3-540-76639-1\_6},
doi = {10.1007/978-3-540-76639-1\_6},
timestamp = {Thu, 14 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcsb/RemyR07.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcsb/SaffreyMHVYFBW07,
author = {Peter Saffrey and
Ofer Margoninski and
James Hetherington and
Marta Varela{-}Rey and
Sachie Yamaji and
Anthony Finkelstein and
Ian David Lockhart Bogle and
Anne Warner},
title = {End-to-End Information Management for Systems Biology},
journal = {Trans. Comp. Sys. Biology},
volume = {8},
pages = {77--91},
year = {2007},
url = {https://doi.org/10.1007/978-3-540-76639-1\_5},
doi = {10.1007/978-3-540-76639-1\_5},
timestamp = {Thu, 14 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcsb/SaffreyMHVYFBW07.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@proceedings{DBLP:journals/tcsb/2007-8,
editor = {Corrado Priami},
title = {Transactions on Computational Systems Biology {VIII}},
series = {Lecture Notes in Computer Science},
volume = {4780},
publisher = {Springer},
year = {2007},
url = {https://doi.org/10.1007/978-3-540-76639-1},
doi = {10.1007/978-3-540-76639-1},
isbn = {978-3-540-76638-4},
timestamp = {Tue, 14 May 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcsb/2007-8.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcsb/ArisiRRC06,
author = {Ivan Arisi and
Paola Roncaglia and
Vittorio Rosato and
Antonino Cattaneo},
title = {{SYMBIONIC:} {A} European Initiative on the Systems Biology of the
Neuronal Cell},
journal = {Trans. Comp. Sys. Biology},
volume = {4},
pages = {71--75},
year = {2006},
url = {https://doi.org/10.1007/11732488\_7},
doi = {10.1007/11732488\_7},
timestamp = {Wed, 06 Jan 2021 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/tcsb/ArisiRRC06.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcsb/BlinovYFH06,
author = {Michael L. Blinov and
Jin Yang and
James R. Faeder and
William S. Hlavacek},
title = {Graph Theory for Rule-Based Modeling of Biochemical Networks},
journal = {Trans. Comp. Sys. Biology},
volume = {7},
pages = {89--106},
year = {2006},
url = {https://doi.org/10.1007/11905455\_5},
doi = {10.1007/11905455\_5},
timestamp = {Wed, 06 Jan 2021 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/tcsb/BlinovYFH06.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcsb/BlosseyCP06,
author = {Ralf Blossey and
Luca Cardelli and
Andrew Phillips},
title = {A Compositional Approach to the Stochastic Dynamics of Gene Networks},
journal = {Trans. Comp. Sys. Biology},
volume = {4},
pages = {99--122},
year = {2006},
url = {https://doi.org/10.1007/11732488\_10},
doi = {10.1007/11732488\_10},
timestamp = {Wed, 06 Jan 2021 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/tcsb/BlosseyCP06.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcsb/BourguignonDKSS06,
author = {Pierre{-}Yves Bourguignon and
Vincent Danos and
Fran{\c{c}}ois K{\'{e}}p{\`{e}}s and
Serge Smidtas and
Vincent Sch{\"{a}}chter},
title = {Property-Driven Statistics of Biological Networks},
journal = {Trans. Comp. Sys. Biology},
volume = {6},
pages = {1--15},
year = {2006},
url = {https://doi.org/10.1007/11880646\_1},
doi = {10.1007/11880646\_1},
timestamp = {Wed, 06 Jan 2021 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/tcsb/BourguignonDKSS06.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcsb/BusiG06,
author = {Nadia Busi and
Roberto Gorrieri},
title = {On the Computational Power of Brane Calculi},
journal = {Trans. Comp. Sys. Biology},
volume = {6},
pages = {16--43},
year = {2006},
url = {https://doi.org/10.1007/11880646\_2},
doi = {10.1007/11880646\_2},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcsb/BusiG06.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcsb/CalderGH06,
author = {Muffy Calder and
Stephen Gilmore and
Jane Hillston},
title = {Modelling the Influence of {RKIP} on the {ERK} Signalling Pathway
Using the Stochastic Process Algebra {PEPA}},
journal = {Trans. Comp. Sys. Biology},
volume = {7},
pages = {1--23},
year = {2006},
url = {https://doi.org/10.1007/11905455\_1},
doi = {10.1007/11905455\_1},
timestamp = {Wed, 06 Jan 2021 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/tcsb/CalderGH06.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcsb/CalderVGO06,
author = {Muffy Calder and
Vladislav Vyshemirsky and
David R. Gilbert and
Richard J. Orton},
title = {Analysis of Signalling Pathways Using Continuous Time Markov Chains},
journal = {Trans. Comp. Sys. Biology},
volume = {6},
pages = {44--67},
year = {2006},
url = {https://doi.org/10.1007/11880646\_3},
doi = {10.1007/11880646\_3},
timestamp = {Wed, 06 Jan 2021 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/tcsb/CalderVGO06.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcsb/CalzoneCFS06,
author = {Laurence Calzone and
Nathalie Chabrier{-}Rivier and
Fran{\c{c}}ois Fages and
Sylvain Soliman},
title = {Machine Learning Biochemical Networks from Temporal Logic Properties},
journal = {Trans. Comp. Sys. Biology},
volume = {6},
pages = {68--94},
year = {2006},
url = {https://doi.org/10.1007/11880646\_4},
doi = {10.1007/11880646\_4},
timestamp = {Tue, 21 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/tcsb/CalzoneCFS06.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcsb/CarrerasCPKMW06,
author = {Iacopo Carreras and
Imrich Chlamtac and
Francesco De Pellegrini and
Csaba Kir{\'{a}}ly and
Daniele Miorandi and
Hagen Woesner},
title = {A Biological Approach to Autonomic Communication Systems},
journal = {Trans. Comp. Sys. Biology},
volume = {4},
pages = {76--82},
year = {2006},
url = {https://doi.org/10.1007/11732488\_8},
doi = {10.1007/11732488\_8},
timestamp = {Wed, 06 Jan 2021 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/tcsb/CarrerasCPKMW06.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcsb/ChaouiyaRT06,
author = {Claudine Chaouiya and
Elisabeth Remy and
Denis Thieffry},
title = {Qualitative Petri Net Modelling of Genetic Networks},
journal = {Trans. Comp. Sys. Biology},
volume = {6},
pages = {95--112},
year = {2006},
url = {https://doi.org/10.1007/11880646\_5},
doi = {10.1007/11880646\_5},
timestamp = {Wed, 06 Jan 2021 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/tcsb/ChaouiyaRT06.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcsb/EccherL06,
author = {Claudio Eccher and
Paola Lecca},
title = {Translating {SBML} Models into the Stochastic \emph{pi}-Calculus for
Stochastic Simulation},
journal = {Trans. Comp. Sys. Biology},
volume = {7},
pages = {73--88},
year = {2006},
url = {https://doi.org/10.1007/11905455\_4},
doi = {10.1007/11905455\_4},
timestamp = {Wed, 06 Jan 2021 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/tcsb/EccherL06.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcsb/Fages06,
author = {Fran{\c{c}}ois Fages},
title = {From Syntax to Semantics in Systems Biology Towards Automated Reasoning
Tools},
journal = {Trans. Comp. Sys. Biology},
volume = {4},
pages = {68--70},
year = {2006},
url = {https://doi.org/10.1007/11732488\_6},
doi = {10.1007/11732488\_6},
timestamp = {Wed, 06 Jan 2021 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/tcsb/Fages06.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcsb/Hertzberger06,
author = {Louis O. Hertzberger},
title = {e-Science and the VL-e Approach},
journal = {Trans. Comp. Sys. Biology},
volume = {4},
pages = {58--67},
year = {2006},
url = {https://doi.org/10.1007/11732488\_5},
doi = {10.1007/11732488\_5},
timestamp = {Wed, 06 Jan 2021 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/tcsb/Hertzberger06.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcsb/HuangLH06,
author = {Zhong Huang and
Yun Li and
Xiaohua Hu},
title = {Anti-parallel Coiled Coils Structure Prediction by Support Vector
Machine Classification},
journal = {Trans. Comp. Sys. Biology},
volume = {5},
pages = {1--8},
year = {2006},
url = {https://doi.org/10.1007/11790105\_1},
doi = {10.1007/11790105\_1},
timestamp = {Fri, 09 Apr 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcsb/HuangLH06.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcsb/JeongM06,
author = {Euna Jeong and
Satoru Miyano},
title = {A Weighted Profile Based Method for Protein-RNA Interacting Residue
Prediction},
journal = {Trans. Comp. Sys. Biology},
volume = {4},
pages = {123--139},
year = {2006},
url = {https://doi.org/10.1007/11732488\_11},
doi = {10.1007/11732488\_11},
timestamp = {Wed, 06 Jan 2021 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/tcsb/JeongM06.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcsb/JhaS06,
author = {Susmit Jha and
R. K. Shyamasundar},
title = {Adapting Biochemical Kripke Structures for Distributed Model Checking},
journal = {Trans. Comp. Sys. Biology},
volume = {7},
pages = {107--122},
year = {2006},
url = {https://doi.org/10.1007/11905455\_6},
doi = {10.1007/11905455\_6},
timestamp = {Wed, 06 Jan 2021 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/tcsb/JhaS06.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcsb/JinZ06,
author = {Bo Jin and
Yan{-}Qing Zhang},
title = {Evolutionary Construction of Granular Kernel Trees for Cyclooxygenase-2
Inhibitor Activity Comparison},
journal = {Trans. Comp. Sys. Biology},
volume = {5},
pages = {25--35},
year = {2006},
url = {https://doi.org/10.1007/11790105\_3},
doi = {10.1007/11790105\_3},
timestamp = {Thu, 23 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/tcsb/JinZ06.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcsb/Jones06,
author = {Andrew C. Jones},
title = {Applying Computer Science Research to Biodiversity Informatics: Some
Experiences and Lessons},
journal = {Trans. Comp. Sys. Biology},
volume = {4},
pages = {44--57},
year = {2006},
url = {https://doi.org/10.1007/11732488\_4},
doi = {10.1007/11732488\_4},
timestamp = {Wed, 06 Jan 2021 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/tcsb/Jones06.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcsb/Kuttler06,
author = {C{\'{e}}line Kuttler},
title = {Simulating Bacterial Transcription and Translation in a Stochastic
\emph{pi} Calculus},
journal = {Trans. Comp. Sys. Biology},
volume = {6},
pages = {113--149},
year = {2006},
url = {https://doi.org/10.1007/11880646\_6},
doi = {10.1007/11880646\_6},
timestamp = {Wed, 06 Jan 2021 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/tcsb/Kuttler06.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcsb/KuttlerN06,
author = {C{\'{e}}line Kuttler and
Joachim Niehren},
title = {Gene Regulation in the Pi Calculus: Simulating Cooperativity at the
Lambda Switch},
journal = {Trans. Comp. Sys. Biology},
volume = {7},
pages = {24--55},
year = {2006},
url = {https://doi.org/10.1007/11905455\_2},
doi = {10.1007/11905455\_2},
timestamp = {Wed, 06 Jan 2021 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/tcsb/KuttlerN06.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcsb/KuwaharaMSBA06,
author = {Hiroyuki Kuwahara and
Chris J. Myers and
Michael S. Samoilov and
Nathan A. Barker and
Adam P. Arkin},
title = {Automated Abstraction Methodology for Genetic Regulatory Networks},
journal = {Trans. Comp. Sys. Biology},
volume = {6},
pages = {150--175},
year = {2006},
url = {https://doi.org/10.1007/11880646\_7},
doi = {10.1007/11880646\_7},
timestamp = {Wed, 06 Jan 2021 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/tcsb/KuwaharaMSBA06.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcsb/LiuCWTL06,
author = {Charles C. H. Liu and
I{-}Jen Chiang and
Jau{-}Min Wong and
Ginni Hsiang{-}Chun Tsai and
Tsau Young Lin},
title = {A Complex Bio-networks of the Function Profile of Genes},
journal = {Trans. Comp. Sys. Biology},
volume = {5},
pages = {9--24},
year = {2006},
url = {https://doi.org/10.1007/11790105\_2},
doi = {10.1007/11790105\_2},
timestamp = {Wed, 06 Jan 2021 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/tcsb/LiuCWTL06.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcsb/MargoninskiSHFW06,
author = {Ofer Margoninski and
Peter Saffrey and
James Hetherington and
Anthony Finkelstein and
Anne Warner},
title = {A Specification Language and a Framework for the Execution of Composite
Models in Systems Biology},
journal = {Trans. Comp. Sys. Biology},
volume = {7},
pages = {163--184},
year = {2006},
url = {https://doi.org/10.1007/11905455\_9},
doi = {10.1007/11905455\_9},
timestamp = {Wed, 06 Jan 2021 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/tcsb/MargoninskiSHFW06.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcsb/Milner06,
author = {Robin Milner},
title = {Scientific Foundation for Global Computing},
journal = {Trans. Comp. Sys. Biology},
volume = {4},
pages = {1--13},
year = {2006},
url = {https://doi.org/10.1007/11732488\_1},
doi = {10.1007/11732488\_1},
timestamp = {Wed, 06 Jan 2021 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/tcsb/Milner06.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcsb/NgZCA06,
author = {Michael K. Ng and
Shuqin Zhang and
Wai{-}Ki Ching and
Tatsuya Akutsu},
title = {A Control Model for Markovian Genetic Regulatory Networks},
journal = {Trans. Comp. Sys. Biology},
volume = {5},
pages = {36--48},
year = {2006},
url = {https://doi.org/10.1007/11790105\_4},
doi = {10.1007/11790105\_4},
timestamp = {Tue, 07 May 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcsb/NgZCA06.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcsb/PengSZ06,
author = {Zhiyong Peng and
Yuan Shi and
Boxuan Zhai},
title = {Realization of Biological Data Management by Object Deputy Database
System},
journal = {Trans. Comp. Sys. Biology},
volume = {5},
pages = {49--67},
year = {2006},
url = {https://doi.org/10.1007/11790105\_5},
doi = {10.1007/11790105\_5},
timestamp = {Wed, 06 Jan 2021 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/tcsb/PengSZ06.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcsb/Perez-JimenezR06,
author = {Mario J. P{\'{e}}rez{-}Jim{\'{e}}nez and
Francisco Jos{\'{e}} Romero{-}Campero},
title = {P Systems, a New Computational Modelling Tool for Systems Biology},
journal = {Trans. Comp. Sys. Biology},
volume = {6},
pages = {176--197},
year = {2006},
url = {https://doi.org/10.1007/11880646\_8},
doi = {10.1007/11880646\_8},
timestamp = {Wed, 06 Jan 2021 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/tcsb/Perez-JimenezR06.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcsb/PhillipsCC06,
author = {Andrew Phillips and
Luca Cardelli and
Giuseppe Castagna},
title = {A Graphical Representation for Biological Processes in the Stochastic
pi-Calculus},
journal = {Trans. Comp. Sys. Biology},
volume = {7},
pages = {123--152},
year = {2006},
url = {https://doi.org/10.1007/11905455\_7},
doi = {10.1007/11905455\_7},
timestamp = {Wed, 06 Jan 2021 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/tcsb/PhillipsCC06.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcsb/RantanenMPRU06,
author = {Ari Rantanen and
Hannu Maaheimo and
Esa Pitk{\"{a}}nen and
Juho Rousu and
Esko Ukkonen},
title = {Equivalence of Metabolite Fragments and Flow Analysis of Isotopomer
Distributions for Flux Estimation},
journal = {Trans. Comp. Sys. Biology},
volume = {6},
pages = {198--220},
year = {2006},
url = {https://doi.org/10.1007/11880646\_9},
doi = {10.1007/11880646\_9},
timestamp = {Wed, 06 Jan 2021 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/tcsb/RantanenMPRU06.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcsb/RemyR06,
author = {Elisabeth Remy and
Paul Ruet},
title = {On Differentiation and Homeostatic Behaviours of Boolean Dynamical
Systems},
journal = {Trans. Comp. Sys. Biology},
volume = {7},
pages = {153--162},
year = {2006},
url = {https://doi.org/10.1007/11905455\_8},
doi = {10.1007/11905455\_8},
timestamp = {Wed, 06 Jan 2021 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/tcsb/RemyR06.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcsb/RemyRMTC06,
author = {Elisabeth Remy and
Paul Ruet and
Luis Eduardo Mendoza and
Denis Thieffry and
Claudine Chaouiya},
title = {From Logical Regulatory Graphs to Standard Petri Nets: Dynamical Roles
and Functionality of Feedback Circuits},
journal = {Trans. Comp. Sys. Biology},
volume = {7},
pages = {56--72},
year = {2006},
url = {https://doi.org/10.1007/11905455\_3},
doi = {10.1007/11905455\_3},
timestamp = {Wed, 06 Jan 2021 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/tcsb/RemyRMTC06.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcsb/Riguidel06,
author = {Michel Riguidel},
title = {The Twilight of the Despotic Digital Civilization},
journal = {Trans. Comp. Sys. Biology},
volume = {4},
pages = {83--98},
year = {2006},
url = {https://doi.org/10.1007/11732488\_9},
doi = {10.1007/11732488\_9},
timestamp = {Wed, 06 Jan 2021 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/tcsb/Riguidel06.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcsb/SaetreSAT06,
author = {Rune S{\ae}tre and
Harald S{\o}vik and
Tore Amble and
Yoshimasa Tsuruoka},
title = {GeneTUC, {GENIA} and Google: Natural Language Understanding in Molecular
Biology Literature},
journal = {Trans. Comp. Sys. Biology},
volume = {5},
pages = {68--82},
year = {2006},
url = {https://doi.org/10.1007/11790105\_6},
doi = {10.1007/11790105\_6},
timestamp = {Wed, 06 Jan 2021 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/tcsb/SaetreSAT06.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcsb/Sleep06,
author = {Ronan Sleep},
title = {A Grand Challenge for Converging Sciences},
journal = {Trans. Comp. Sys. Biology},
volume = {4},
pages = {38--43},
year = {2006},
url = {https://doi.org/10.1007/11732488\_3},
doi = {10.1007/11732488\_3},
timestamp = {Wed, 06 Jan 2021 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/tcsb/Sleep06.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcsb/TalcottD06,
author = {Carolyn L. Talcott and
David L. Dill},
title = {Multiple Representations of Biological Processes},
journal = {Trans. Comp. Sys. Biology},
volume = {6},
pages = {221--245},
year = {2006},
url = {https://doi.org/10.1007/11880646\_10},
doi = {10.1007/11880646\_10},
timestamp = {Wed, 06 Jan 2021 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/tcsb/TalcottD06.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcsb/WangLH06,
author = {Hei{-}Chia Wang and
Yi{-}Shiun Lee and
Tian{-}Hsiang Huang},
title = {Gene Relation Finding Through Mining Microarray Data and Literature},
journal = {Trans. Comp. Sys. Biology},
volume = {5},
pages = {83--96},
year = {2006},
url = {https://doi.org/10.1007/11790105\_7},
doi = {10.1007/11790105\_7},
timestamp = {Wed, 06 Jan 2021 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/tcsb/WangLH06.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcsb/Wooley06,
author = {John C. Wooley},
title = {Interdisciplinary Innovation in International Initiatives},
journal = {Trans. Comp. Sys. Biology},
volume = {4},
pages = {14--37},
year = {2006},
url = {https://doi.org/10.1007/11732488\_2},
doi = {10.1007/11732488\_2},
timestamp = {Wed, 06 Jan 2021 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/tcsb/Wooley06.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcsb/YuTC06,
author = {Hsieh{-}Hui Yu and
Vincent Shin{-}Mu Tseng and
Jiin{-}Haur Chuang},
title = {A Multi-information Based Gene Scoring Method for Analysis of Gene
Expression Data},
journal = {Trans. Comp. Sys. Biology},
volume = {5},
pages = {97--111},
year = {2006},
url = {https://doi.org/10.1007/11790105\_8},
doi = {10.1007/11790105\_8},
timestamp = {Wed, 06 Jan 2021 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/tcsb/YuTC06.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcsb/ZhouHLLZ06,
author = {Xiaohua Zhou and
Xiaohua Hu and
Guangren Li and
Xia Lin and
Xiaodan Zhang},
title = {Relation-Based Document Retrieval for Biomedical {IR}},
journal = {Trans. Comp. Sys. Biology},
volume = {5},
pages = {112--128},
year = {2006},
url = {https://doi.org/10.1007/11790105\_9},
doi = {10.1007/11790105\_9},
timestamp = {Wed, 07 Dec 2022 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/tcsb/ZhouHLLZ06.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@proceedings{DBLP:journals/tcsb/2006-4,
editor = {Corrado Priami and
Luca Cardelli and
Stephen Emmott},
title = {Transactions on Computational Systems Biology {IV}},
series = {Lecture Notes in Computer Science},
volume = {3939},
publisher = {Springer},
year = {2006},
url = {https://doi.org/10.1007/11732488},
doi = {10.1007/11732488},
isbn = {3-540-33245-6},
timestamp = {Tue, 14 May 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcsb/2006-4.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@proceedings{DBLP:journals/tcsb/2006-5,
editor = {Corrado Priami and
Xiaohua Hu and
Yi Pan and
Tsau Young Lin},
title = {Transactions on Computational Systems Biology {V}},
series = {Lecture Notes in Computer Science},
volume = {4070},
publisher = {Springer},
year = {2006},
url = {https://doi.org/10.1007/11790105},
doi = {10.1007/11790105},
isbn = {3-540-36048-4},
timestamp = {Fri, 09 Apr 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcsb/2006-5.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@proceedings{DBLP:journals/tcsb/2006-6,
editor = {Corrado Priami and
Gordon D. Plotkin},
title = {Transactions on Computational Systems Biology {VI}},
series = {Lecture Notes in Computer Science},
volume = {4220},
publisher = {Springer},
year = {2006},
url = {https://doi.org/10.1007/11880646},
doi = {10.1007/11880646},
isbn = {3-540-45779-8},
timestamp = {Tue, 14 May 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcsb/2006-6.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@proceedings{DBLP:journals/tcsb/2006-7,
editor = {Corrado Priami and
Anna Ing{\'{o}}lfsd{\'{o}}ttir and
Bud Mishra and
Hanne Riis Nielson},
title = {Transactions on Computational Systems Biology {VII}},
series = {Lecture Notes in Computer Science},
volume = {4230},
publisher = {Springer},
year = {2006},
url = {https://doi.org/10.1007/11905455},
doi = {10.1007/11905455},
isbn = {3-540-48837-5},
timestamp = {Tue, 14 May 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcsb/2006-7.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcsb/ArmanoMO05,
author = {Giuliano Armano and
Luciano Milanesi and
Alessandro Orro},
title = {Using Secondary Structure Information to Perform Multiple Alignment},
journal = {Trans. Comp. Sys. Biology},
volume = {3},
pages = {78--88},
year = {2005},
url = {https://doi.org/10.1007/11599128\_6},
doi = {10.1007/11599128\_6},
timestamp = {Wed, 06 Jan 2021 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/tcsb/ArmanoMO05.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcsb/ArmanoMOV05,
author = {Giuliano Armano and
Gianmaria Mancosu and
Alessandro Orro and
Eloisa Vargiu},
title = {A Multi-agent System for Protein Secondary Structure Prediction},
journal = {Trans. Comp. Sys. Biology},
volume = {3},
pages = {14--32},
year = {2005},
url = {https://doi.org/10.1007/11599128\_2},
doi = {10.1007/11599128\_2},
timestamp = {Wed, 06 Jan 2021 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/tcsb/ArmanoMOV05.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcsb/BlinFRV05,
author = {Guillaume Blin and
Guillaume Fertin and
Romeo Rizzi and
St{\'{e}}phane Vialette},
title = {What Makes the Arc-Preserving Subsequence Problem Hard?},
journal = {Trans. Comp. Sys. Biology},
volume = {2},
pages = {1--36},
year = {2005},
url = {https://doi.org/10.1007/11567752\_1},
doi = {10.1007/11567752\_1},
timestamp = {Thu, 14 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcsb/BlinFRV05.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcsb/CannataCMOR05,
author = {Nicola Cannata and
Flavio Corradini and
Emanuela Merelli and
Andrea Omicini and
Alessandro Ricci},
title = {An Agent-Oriented Conceptual Framework for Systems Biology},
journal = {Trans. Comp. Sys. Biology},
volume = {3},
pages = {105--122},
year = {2005},
url = {https://doi.org/10.1007/11599128\_8},
doi = {10.1007/11599128\_8},
timestamp = {Sat, 09 Apr 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcsb/CannataCMOR05.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcsb/Cardelli05,
author = {Luca Cardelli},
title = {Abstract Machines of Systems Biology},
journal = {Trans. Comp. Sys. Biology},
volume = {3},
pages = {145--168},
year = {2005},
url = {https://doi.org/10.1007/11599128\_10},
doi = {10.1007/11599128\_10},
timestamp = {Wed, 06 Jan 2021 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/tcsb/Cardelli05.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcsb/CiocchettaPQ05,
author = {Federica Ciocchetta and
Corrado Priami and
Paola Quaglia},
title = {Modeling Kohn Interaction Maps with Beta-Binders: An Example},
journal = {Trans. Comp. Sys. Biology},
volume = {3},
pages = {33--48},
year = {2005},
url = {https://doi.org/10.1007/11599128\_3},
doi = {10.1007/11599128\_3},
timestamp = {Wed, 06 Jan 2021 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/tcsb/CiocchettaPQ05.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcsb/FeytmansNP05,
author = {Ernest Feytmans and
Denis Noble and
Manuel C. Peitsch},
title = {Genome Size and Numbers of Biological Functions},
journal = {Trans. Comp. Sys. Biology},
volume = {1},
pages = {44--49},
year = {2005},
url = {https://doi.org/10.1007/978-3-540-32126-2\_4},
doi = {10.1007/978-3-540-32126-2\_4},
timestamp = {Thu, 14 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcsb/FeytmansNP05.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcsb/FreschiB05,
author = {Valerio Freschi and
Alessandro Bogliolo},
title = {Computer-Aided {DNA} Base Calling from Forward and Reverse Electropherograms},
journal = {Trans. Comp. Sys. Biology},
volume = {3},
pages = {1--13},
year = {2005},
url = {https://doi.org/10.1007/11599128\_1},
doi = {10.1007/11599128\_1},
timestamp = {Wed, 06 Jan 2021 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/tcsb/FreschiB05.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcsb/GomezAPGJV05,
author = {Manuel J. G{\'{o}}mez and
Ram{\'{o}}n Alonso{-}Allende and
Florencio Pazos and
Osvaldo Gra{\~{n}}a and
David de Juan and
Alfonso Valencia},
title = {Accessible Protein Interaction Data for Network Modeling. Structure
of the Information and Available Repositories},
journal = {Trans. Comp. Sys. Biology},
volume = {1},
pages = {1--13},
year = {2005},
url = {https://doi.org/10.1007/978-3-540-32126-2\_1},
doi = {10.1007/978-3-540-32126-2\_1},
timestamp = {Sat, 19 Aug 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcsb/GomezAPGJV05.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcsb/IngolfsdottirG05,
author = {Anna Ing{\'{o}}lfsd{\'{o}}ttir and
Daniel Gudbjartsson},
title = {Genetic Linkage Analysis Algorithms and Their Implementation},
journal = {Trans. Comp. Sys. Biology},
volume = {3},
pages = {123--144},
year = {2005},
url = {https://doi.org/10.1007/11599128\_9},
doi = {10.1007/11599128\_9},
timestamp = {Wed, 06 Jan 2021 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/tcsb/IngolfsdottirG05.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcsb/KolliLHPP05,
author = {Vijaya Smitha Kolli and
Hui Liu and
Jieyue He and
Michelle Hong Pan and
Yi Pan},
title = {Calculating Genomic Distances in Parallel Using OpenMP},
journal = {Trans. Comp. Sys. Biology},
volume = {2},
pages = {113--123},
year = {2005},
url = {https://doi.org/10.1007/11567752\_8},
doi = {10.1007/11567752\_8},
timestamp = {Thu, 14 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcsb/KolliLHPP05.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcsb/LeiD05,
author = {Zhengdeng Lei and
Yang Dai},
title = {A Class of New Kernels Based on High-Scored Pairs of k-Peptides for
SVMs and Its Application for Prediction of Protein Subcellular Localization},
journal = {Trans. Comp. Sys. Biology},
volume = {2},
pages = {48--58},
year = {2005},
url = {https://doi.org/10.1007/11567752\_3},
doi = {10.1007/11567752\_3},
timestamp = {Thu, 14 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcsb/LeiD05.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcsb/LiuSMC05,
author = {Chunmei Liu and
Yinglei Song and
Russell L. Malmberg and
Liming Cai},
title = {Profiling and Searching for {RNA} Pseudoknot Structures in Genomes},
journal = {Trans. Comp. Sys. Biology},
volume = {2},
pages = {37--47},
year = {2005},
url = {https://doi.org/10.1007/11567752\_2},
doi = {10.1007/11567752\_2},
timestamp = {Thu, 14 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcsb/LiuSMC05.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcsb/MandoiuPT05,
author = {Ion I. Mandoiu and
Claudia Prajescu and
Dragos Trinca},
title = {Improved Tag Set Design and Multiplexing Algorithms for Universal
Arrays},
journal = {Trans. Comp. Sys. Biology},
volume = {2},
pages = {124--137},
year = {2005},
url = {https://doi.org/10.1007/11567752\_9},
doi = {10.1007/11567752\_9},
timestamp = {Thu, 14 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcsb/MandoiuPT05.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcsb/NakhlehW05,
author = {Luay Nakhleh and
Li{-}San Wang},
title = {Phylogenetic Networks: Properties and Relationship to Trees and Clusters},
journal = {Trans. Comp. Sys. Biology},
volume = {2},
pages = {82--99},
year = {2005},
url = {https://doi.org/10.1007/11567752\_6},
doi = {10.1007/11567752\_6},
timestamp = {Thu, 14 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcsb/NakhlehW05.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcsb/PriamiQ05,
author = {Corrado Priami and
Paola Quaglia},
title = {Operational Patterns in Beta-Binders},
journal = {Trans. Comp. Sys. Biology},
volume = {1},
pages = {50--65},
year = {2005},
url = {https://doi.org/10.1007/978-3-540-32126-2\_5},
doi = {10.1007/978-3-540-32126-2\_5},
timestamp = {Thu, 14 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcsb/PriamiQ05.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcsb/Roux-RouquieS05,
author = {Magali Roux{-}Rouqui{\'{e}} and
Michel Soto},
title = {Virtualization in Systems Biology: Metamodels and Modeling Languages
for Semantic Data Integration},
journal = {Trans. Comp. Sys. Biology},
volume = {1},
pages = {28--43},
year = {2005},
url = {https://doi.org/10.1007/978-3-540-32126-2\_3},
doi = {10.1007/978-3-540-32126-2\_3},
timestamp = {Thu, 14 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcsb/Roux-RouquieS05.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcsb/SchreiberS05,
author = {Falk Schreiber and
Henning Schw{\"{o}}bbermeyer},
title = {Frequency Concepts and Pattern Detection for the Analysis of Motifs
in Networks},
journal = {Trans. Comp. Sys. Biology},
volume = {3},
pages = {89--104},
year = {2005},
url = {https://doi.org/10.1007/11599128\_7},
doi = {10.1007/11599128\_7},
timestamp = {Wed, 06 Jan 2021 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/tcsb/SchreiberS05.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcsb/ShenhavSLK05,
author = {Barak Shenhav and
Ariel Solomon and
Doron Lancet and
Ran Kafri},
title = {Early Systems Biology and Prebiotic Networks},
journal = {Trans. Comp. Sys. Biology},
volume = {1},
pages = {14--27},
year = {2005},
url = {https://doi.org/10.1007/978-3-540-32126-2\_2},
doi = {10.1007/978-3-540-32126-2\_2},
timestamp = {Thu, 14 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcsb/ShenhavSLK05.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcsb/SongSHA05,
author = {Min Song and
Il{-}Yeol Song and
Xiaohua Hu and
Robert B. Allen},
title = {KXtractor: An Effective Biomedical Information Extraction Technique
Based on Mixture Hidden Markov Models},
journal = {Trans. Comp. Sys. Biology},
volume = {2},
pages = {68--81},
year = {2005},
url = {https://doi.org/10.1007/11567752\_5},
doi = {10.1007/11567752\_5},
timestamp = {Fri, 09 Apr 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcsb/SongSHA05.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcsb/StumpfINW05,
author = {Michael P. H. Stumpf and
Piers J. Ingram and
Ian Nouvel and
Carsten Wiuf},
title = {Statistical Model Selection Methods Applied to Biological Networks},
journal = {Trans. Comp. Sys. Biology},
volume = {3},
pages = {65--77},
year = {2005},
url = {https://doi.org/10.1007/11599128\_5},
doi = {10.1007/11599128\_5},
timestamp = {Wed, 06 Jan 2021 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/tcsb/StumpfINW05.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcsb/UhrmacherDZ05,
author = {Adelinde M. Uhrmacher and
Daniela Degenring and
Bernard P. Zeigler},
title = {Discrete Event Multi-level Models for Systems Biology},
journal = {Trans. Comp. Sys. Biology},
volume = {1},
pages = {66--89},
year = {2005},
url = {https://doi.org/10.1007/978-3-540-32126-2\_6},
doi = {10.1007/978-3-540-32126-2\_6},
timestamp = {Thu, 14 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcsb/UhrmacherDZ05.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcsb/XuZ05,
author = {Xian Xu and
Aidong Zhang},
title = {Virtual Gene: Using Correlations Between Genes to Select Informative
Genes on Microarray Datasets},
journal = {Trans. Comp. Sys. Biology},
volume = {2},
pages = {138--152},
year = {2005},
url = {https://doi.org/10.1007/11567752\_10},
doi = {10.1007/11567752\_10},
timestamp = {Thu, 14 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcsb/XuZ05.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcsb/ZhangCS05,
author = {Qiangfeng Zhang and
Francis Y. L. Chin and
Hong Shen},
title = {Minimum Parent-Offspring Recombination Haplotype Inference in Pedigrees},
journal = {Trans. Comp. Sys. Biology},
volume = {2},
pages = {100--112},
year = {2005},
url = {https://doi.org/10.1007/11567752\_7},
doi = {10.1007/11567752\_7},
timestamp = {Thu, 14 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcsb/ZhangCS05.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcsb/ZhengL05,
author = {Wei{-}Mou Zheng and
Xin Liu},
title = {A Protein Structural Alphabet and Its Substitution Matrix {CLESUM}},
journal = {Trans. Comp. Sys. Biology},
volume = {2},
pages = {59--67},
year = {2005},
url = {https://doi.org/10.1007/11567752\_4},
doi = {10.1007/11567752\_4},
timestamp = {Thu, 14 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcsb/ZhengL05.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcsb/ZobeleyLKIK05,
author = {J{\"{u}}rgen Zobeley and
Dirk Lebiedz and
Julia Kammerer and
Anton Ishmurzin and
Ursula Kummer},
title = {A New Time-Dependent Complexity Reduction Method for Biochemical Systems},
journal = {Trans. Comp. Sys. Biology},
volume = {1},
pages = {90--110},
year = {2005},
url = {https://doi.org/10.1007/978-3-540-32126-2\_7},
doi = {10.1007/978-3-540-32126-2\_7},
timestamp = {Thu, 14 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcsb/ZobeleyLKIK05.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcsb/dInvernoP05,
author = {Mark d'Inverno and
Jane Prophet},
title = {Multidisciplinary Investigation into Adult Stem Cell Behavior},
journal = {Trans. Comp. Sys. Biology},
volume = {3},
pages = {49--64},
year = {2005},
url = {https://doi.org/10.1007/11599128\_4},
doi = {10.1007/11599128\_4},
timestamp = {Wed, 06 Jan 2021 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/tcsb/dInvernoP05.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@proceedings{DBLP:journals/tcsb/2005-1,
editor = {Corrado Priami},
title = {Transactions on Computational Systems Biology {I}},
series = {Lecture Notes in Computer Science},
volume = {3380},
publisher = {Springer},
year = {2005},
url = {https://doi.org/10.1007/b107357},
doi = {10.1007/B107357},
isbn = {3-540-25422-6},
timestamp = {Tue, 14 May 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcsb/2005-1.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@proceedings{DBLP:journals/tcsb/2005-2,
editor = {Corrado Priami and
Alexander Zelikovsky},
title = {Transactions on Computational Systems Biology {II}},
series = {Lecture Notes in Computer Science},
volume = {3680},
publisher = {Springer},
year = {2005},
url = {https://doi.org/10.1007/11567752},
doi = {10.1007/11567752},
isbn = {3-540-29401-5},
timestamp = {Tue, 14 May 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcsb/2005-2.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@proceedings{DBLP:journals/tcsb/2005-3,
editor = {Corrado Priami and
Emanuela Merelli and
Pedro Pablo Gonz{\'{a}}lez P{\'{e}}rez and
Andrea Omicini},
title = {Transactions on Computational Systems Biology {III}},
series = {Lecture Notes in Computer Science},
volume = {3737},
publisher = {Springer},
year = {2005},
url = {https://doi.org/10.1007/11599128},
doi = {10.1007/11599128},
isbn = {3-540-30883-0},
timestamp = {Tue, 14 May 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcsb/2005-3.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
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