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ORCIDJulie Dawn Thompson
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2020 – today
- 2024
[j41]Nicolas Haas, Julie Dawn Thompson, Jean-Paul Renaud, Kirsley Chennen, Olivier Poch
:
StopKB: a comprehensive knowledgebase for nonsense suppression therapies. Database J. Biol. Databases Curation 2024 (2024)- [j40]Hajer Akid, Kirsley Chennen, Gabriel Frey, Julie Dawn Thompson, Mounir Ben Ayed, Nicolas Lachiche:
Graph-based machine learning model for weight prediction in protein-protein networks. BMC Bioinform. 25(1): 349 (2024) - 2023
- [j39]Hiba Khodji, Pierre Collet, Julie Dawn Thompson, Anne Jeannin-Girardon:
De-MISTED: Image-based classification of erroneous multiple sequence alignments using convolutional neural networks. Appl. Intell. 53(15): 18806-18820 (2023) - [j38]Arnaud Kress, Olivier Poch, Odile Lecompte, Julie Dawn Thompson:
Real or fake? Measuring the impact of protein annotation errors on estimates of domain gain and loss events. Frontiers Bioinform. 3 (2023) - 2022
- [c4]Hajer Akid, Kirsley Chennen, Gabriel Frey, Julie Dawn Thompson, Mounir Ben Ayed, Nicolas Lachiche:
Apprentissage automatique basé sur l'agrégation pour la prédiction de liens dans les réseaux d'interactions protéine-protéine. EGC 2022: 481-482 - [c3]Hiba Khodji, Lucille Herbay, Pierre Collet, Julie Dawn Thompson, Anne Jeannin-Girardon:
MERLIN: Identifying Inaccuracies in Multiple Sequence Alignments Using Object Detection. AIAI (1) 2022: 192-203 - 2021
- [j37]Julie Dawn Thompson, Raymond Ripp, Claudine Mayer, Olivier Poch, Christian J. Michel:
Potential role of the X circular code in the regulation of gene expression. Biosyst. 203: 104368 (2021) - [j36]Nicolas Scalzitti, Arnaud Kress, Romain Orhand, Thomas Weber, Luc Moulinier, Anne Jeannin-Girardon, Pierre Collet, Olivier Poch, Julie Dawn Thompson:
Spliceator: multi-species splice site prediction using convolutional neural networks. BMC Bioinform. 22(1): 561 (2021) - 2020
- [j35]Gopal Dila, Christian J. Michel, Julie Dawn Thompson:
Optimality of circular codes versus the genetic code after frameshift errors. Biosyst. 195: 104134 (2020) - [j34]Corentin Meyer, Nicolas Scalzitti, Anne Jeannin-Girardon, Pierre Collet, Olivier Poch, Julie Dawn Thompson:
Understanding the causes of errors in eukaryotic protein-coding gene prediction: a case study of primate proteomes. BMC Bioinform. 21(1): 513 (2020)
2010 – 2019
- 2019
- [j33]Gopal Dila, Christian J. Michel, Olivier Poch, Raymond Ripp, Julie Dawn Thompson:
Evolutionary conservation and functional implications of circular code motifs in eukaryotic genomes. Biosyst. 175: 57-74 (2019) - [j32]Yannis Nevers, Arnaud Kress, Audrey Defosset, Raymond Ripp, Benjamin Linard, Julie Dawn Thompson, Olivier Poch, Odile Lecompte:
OrthoInspector 3.0: open portal for comparative genomics. Nucleic Acids Res. 47(Database-Issue): D411-D418 (2019) - [j31]Ali Ayadi, Cecilia Zanni-Merk, François de Bertrand de Beuvron, Julie Dawn Thompson, Saoussen Krichen:
BNO - An ontology for understanding the transittability of complex biomolecular networks. J. Web Semant. 57 (2019) - 2018
- [j30]Arnaud Kress, Odile Lecompte, Olivier Poch, Julie Dawn Thompson:
PROBE: analysis and visualization of protein block-level evolution. Bioinform. 34(19): 3390-3392 (2018) - 2017
- [c2]Julie Dawn Thompson, Renaud Vanhoutrève, Pierre Collet:
MEMSA: A Robust Parisian EA for Multidimensional Multiple Sequence Alignment. Artificial Evolution 2017: 88-99 - 2016
- [j29]Renaud Vanhoutrève, Arnaud Kress, Baptiste Legrand, Hélène Gass, Olivier Poch, Julie Dawn Thompson:
LEON-BIS: multiple alignment evaluation of sequence neighbours using a Bayesian inference system. BMC Bioinform. 17: 271 (2016) - 2015
- [j28]Benjamin Linard, Alexis Allot, Raphael Schneider, Can Morel, Raymond Ripp, Marc Bigler, Julie Dawn Thompson, Olivier Poch, Odile Lecompte:
OrthoInspector 2.0: Software and database updates. Bioinform. 31(3): 447-448 (2015) - 2014
- [j27]Walyd Khenoussi, Renaud Vanhoutrève, Olivier Poch, Julie Dawn Thompson:
SIBIS: a Bayesian model for inconsistent protein sequence estimation. Bioinform. 30(17): 2432-2439 (2014) - [j26]Carlos Bermejo-Das-Neves, Hoan-Ngoc Nguyen, Olivier Poch, Julie Dawn Thompson:
A comprehensive study of small non-frameshift insertions/deletions in proteins and prediction of their phenotypic effects by a machine learning method (KD4i). BMC Bioinform. 15: 111 (2014) - [j25]Hoan Nguyen, Laurent Michel, Julie Dawn Thompson, Olivier Poch:
Heterogeneous biological data integration with declarative query language. IBM J. Res. Dev. 58(2/3) (2014) - [p1]Hoan Nguyen, Julie Dawn Thompson, Patrick Schutz, Olivier Poch:
Intelligent Integrative Knowledge Bases: Bridging Genomics, Integrative Biology and Translational Medicine. Interactive Knowledge Discovery and Data Mining in Biomedical Informatics 2014: 255-270 - 2013
- [c1]Lina Fahed, Gabriel Frey, Julie Dawn Thompson, Nicolas Lachiche:
Classification multi-étiquettes pour l'alignement multiple de séquences protéiques. EGC 2013: 431-436 - 2012
- [j24]Tien-Dao Luu, Alin-Mihai Rusu, Vincent Walter, Raymond Ripp, Luc Moulinier, Jean Muller, Thierry Toursel, Julie Dawn Thompson, Olivier Poch, Hoan Nguyen:
MSV3d: database of human MisSense variants mapped to 3D protein structure. Database J. Biol. Databases Curation 2012 (2012) - [j23]Tien-Dao Luu, Alin Rusu, Vincent Walter, Benjamin Linard, Laetitia Poidevin, Raymond Ripp, Luc Moulinier, Jean Muller, Wolfgang Raffelsberger, Nicolas Wicker, Odile Lecompte, Julie Dawn Thompson, Olivier Poch, Hoan Nguyen:
KD4v: comprehensible knowledge discovery system for missense variant. Nucleic Acids Res. 40(Web-Server-Issue): 71-75 (2012) - 2011
- [j22]Benjamin Linard, Julie Dawn Thompson, Olivier Poch, Odile Lecompte:
OrthoInspector: comprehensive orthology analysis and visual exploration. BMC Bioinform. 12: 11 (2011) - [j21]Christopher J. Creevey, Jean Muller, Tobias Doerks, Julie Dawn Thompson, Detlev Arendt, Peer Bork:
Identifying Single Copy Orthologs in Metazoa. PLoS Comput. Biol. 7(12) (2011) - 2010
- [j20]Jean Muller, Christopher J. Creevey, Julie Dawn Thompson, Detlev Arendt, Peer Bork:
AQUA: automated quality improvement for multiple sequence alignments. Bioinform. 26(2): 263-265 (2010)
2000 – 2009
- 2009
- [j19]Mohamed Radhouene Aniba, Sophie Siguenza, Anne Friedrich, Frédéric Plewniak, Olivier Poch, Aron Marchler-Bauer, Julie Dawn Thompson:
Knowledge-based expert systems and a proof-of-concept case study for multiple sequence alignment construction and analysis. Briefings Bioinform. 10(1): 11-23 (2009) - [j18]Philippe Gouret, Julie Dawn Thompson, Pierre Pontarotti:
PhyloPattern: regular expressions to identify complex patterns in phylogenetic trees. BMC Bioinform. 10: 298 (2009) - [j17]Valentín Ruano-Rubio, Olivier Poch, Julie Dawn Thompson:
Comparison of eukaryotic phylogenetic profiling approaches using species tree aware methods. BMC Bioinform. 10: 383 (2009) - 2008
- [j16]Emmanuel Perrodou, Claudia Chica, Olivier Poch, Toby J. Gibson, Julie Dawn Thompson:
A new protein linear motif benchmark for multiple sequence alignment software. BMC Bioinform. 9 (2008) - 2007
- [j15]Mark A. Larkin, Gordon Blackshields, Nigel P. Brown, R. Chenna, Paul A. McGettigan, Hamish McWilliam, Franck Valentin, Iain M. Wallace, Andreas Wilm, Rodrigo Lopez, Julie Dawn Thompson, Toby J. Gibson, Desmond G. Higgins:
Clustal W and Clustal X version 2.0. Bioinform. 23(21): 2947-2948 (2007) - 2006
- [j14]Nicolas B. Garnier, Anne Friedrich, Raphael Bolze, Emmanuel Bettler, Luc Moulinier, Christophe Geourjon, Julie Dawn Thompson, Gilbert Deléage, Olivier Poch:
MAGOS: multiple alignment and modelling server. Bioinform. 22(17): 2164-2165 (2006) - [j13]Julie Dawn Thompson, Arnaud Muller, Andrew M. Waterhouse, James B. Procter, Geoffrey J. Barton, Frédéric Plewniak, Olivier Poch:
MACSIMS : multiple alignment of complete sequences information management system. BMC Bioinform. 7: 318 (2006) - 2005
- [j12]Frédéric Chalmel, Aurélie Lardenois, Julie Dawn Thompson, Jean Muller, José-Alain Sahel, Thierry Léveillard, Olivier Poch:
GOAnno: GO annotation based on multiple alignment. Bioinform. 21(9): 2095-2096 (2005) - [j11]Laurent Bianchetti, Julie Dawn Thompson, Odile Lecompte, Frédéric Plewniak, Olivier Poch:
Valid: Validation of Protein Sequence Quality Based on Multiple Alignment Data. J. Bioinform. Comput. Biol. 3(4): 929-948 (2005) - 2003
- [j10]Julie Dawn Thompson, Jean-Claude Thierry, Olivier Poch:
RASCAL: Rapid Scanning and Correction of Multiple Sequence Alignments. Bioinform. 19(9): 1155-1161 (2003) - [j9]Chenna Ramu, Hideaki Sugawara, Tadashi Koike, Rodrigo Lopez, Toby J. Gibson, Desmond G. Higgins, Julie Dawn Thompson:
Multiple sequence alignment with the Clustal series of programs. Nucleic Acids Res. 31(13): 3497-3500 (2003) - [j8]Frédéric Plewniak, Laurent Bianchetti, Yann Brelivet, Annaick Carles, Frédéric Chalmel, Odile Lecompte, Thiebaut Mochel, Luc Moulinier, Arnaud Muller, Jean Muller, Veronique Prigent, Raymond Ripp, Jean-Claude Thierry, Julie Dawn Thompson, Nicolas Wicker, Olivier Poch:
PipeAlign: a new toolkit for protein family analysis. Nucleic Acids Res. 31(13): 3829-3832 (2003) - 2001
- [j7]Anne Bahr, Julie Dawn Thompson, Jean-Claude Thierry, Olivier Poch:
BAliBASE (Benchmark Alignment dataBASE): enhancements for repeats, transmembrane sequences and circular permutations. Nucleic Acids Res. 29(1): 323-326 (2001) - 2000
- [j6]Frédéric Plewniak, Julie Dawn Thompson, Olivier Poch:
Ballast: Blast post-processing based on locally conserved segments. Bioinform. 16(9): 750-759 (2000)
1990 – 1999
- 1999
- [j5]Julie Dawn Thompson, Frédéric Plewniak, Olivier Poch:
BAliBASE: a benchmark alignment database for the evaluation of multiple alignment programs. Bioinform. 15(1): 87-88 (1999) - [j4]Julie Dawn Thompson, Frédéric Plewniak, Olivier Poch:
A comprehensive comparison of multiple sequence alignment programs. Nucleic Acids Res. 27(13): 2682-2690 (1999) - 1995
- [j3]Julie Dawn Thompson:
Introducing variable gap penalties to sequence alignment in linear space. Comput. Appl. Biosci. 11(2): 181-186 (1995) - 1994
- [j2]Julie Dawn Thompson, Desmond G. Higgins, Toby J. Gibson:
Improved sensitivity of profile searches through the use of sequence weights and gap excision. Comput. Appl. Biosci. 10(1): 19-29 (1994) - [j1]Toby J. Gibson, Julie Dawn Thompson:
Detection of dsRNA-binding domains in RNA helicase A and Drosophila maleless: implications for monomeric RNA helicases. Nucleic Acids Res. 22(13): 2552-2556 (1994)
Coauthor Index
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