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ORCIDJunmei Wang
This is just a disambiguation page, and is not intended to be the bibliography of an actual person. Any publication listed on this page has not been assigned to an actual author yet. If you know the true author of one of the publications listed below, you are welcome to contact us.
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2020 – today
- 2024
[j59]Jiajia Wang
, Jimmy Xiangji Huang, Xinhui Tu, Junmei Wang, Angela Jennifer Huang, Md. Tahmid Rahman Laskar, Amran Bhuiyan:
Utilizing BERT for Information Retrieval: Survey, Applications, Resources, and Challenges. ACM Comput. Surv. 56(7): 185:1-185:33 (2024)- [i2]David Oniani, Jordan Hilsman, Chengxi Zang, Junmei Wang, Lianjin Cai, Jan Zawala, Yanshan Wang:
Emerging Opportunities of Using Large Language Models for Translation Between Drug Molecules and Indications. CoRR abs/2402.09588 (2024) - [i1]Jiajia Wang, Jimmy X. Huang, Xinhui Tu, Junmei Wang, Angela Jennifer Huang, Md. Tahmid Rahman Laskar, Amran Bhuiyan:
Utilizing BERT for Information Retrieval: Survey, Applications, Resources, and Challenges. CoRR abs/2403.00784 (2024) - 2023
- [j58]Jie Yu, Chao Zhang, Junmei Wang, Mingzhi Zhang, Xingguo Zhang, Xiaoqin Li:
Research on Asparagus Recognition Based on Deep Learning. IEEE Access 11: 117362-117367 (2023) - [j57]Viet Hoang Man, Xibing He, Phuong H. Nguyen, Celeste Sagui, Christopher Roland, Xiang-Qun Xie, Junmei Wang:
Unpolarized laser method for infrared spectrum calculation of amide I C=O bonds in proteins using molecular dynamics simulation. Comput. Biol. Medicine 159: 106902 (2023) - [j56]Yuchen Sun, Tingjun Hou, Xibing He, Viet Hoang Man, Junmei Wang:
Development and test of highly accurate endpoint free energy methods. 2: Prediction of logarithm of n-octanol-water partition coefficient (logP) for druglike molecules using MM-PBSA method. J. Comput. Chem. 44(13): 1300-1311 (2023) - [j55]Yuchen Sun, Xibing He, Tingjun Hou, Lianjin Cai, Viet Hoang Man, Junmei Wang:
Development and test of highly accurate endpoint free energy methods. 1: Evaluation of ABCG2 charge model on solvation free energy prediction and optimization of atom radii suitable for more accurate solvation free energy prediction by the PBSA method. J. Comput. Chem. 44(14): 1334-1346 (2023) - [j54]Viet Hoang Man, Xibing He, Fengyang Han, Lianjin Cai, Luxuan Wang, Taoyu Niu, Jingchen Zhai, Beihong Ji, Jie Gao, Junmei Wang:
Phosphorylation at Ser289 Enhances the Oligomerization of Tau Repeat R2. J. Chem. Inf. Model. 63(4): 1351-1361 (2023) - [j53]Jike Wang, Yundian Zeng, Huiyong Sun, Junmei Wang, Xiaorui Wang, Ruofan Jin, Mingyang Wang, Xujun Zhang, Dong-Sheng Cao, Xi Chen, Chang-Yu Hsieh, Tingjun Hou:
Molecular Generation with Reduced Labeling through Constraint Architecture. J. Chem. Inf. Model. 63(11): 3319-3327 (2023) - [j52]David A. Case, Hasan Metin Aktulga, Kellon Belfon, David S. Cerutti, G. Andrés Cisneros, Vinícius Wilian D. Cruzeiro, Negin Forouzesh, Timothy J. Giese, Andreas W. Götz, Holger Gohlke, Saeed Izadi, Koushik Kasavajhala, Mehmet Cagri Kaymak, Edward King, Tom Kurtzman, Tai-Sung Lee, Pengfei Li, Jian Liu, Tyler Luchko, Ray Luo, Madushanka Manathunga, Matías R. Machado, Hai Minh Nguyen, Kurt A. O'Hearn, Alexey V. Onufriev, Feng Pan, Sergio Pantano, Ruxi Qi, Ali Rahnamoun, Ali Risheh, Stephan Schott-Verdugo, Akhil Shajan, Jason M. Swails, Junmei Wang, Haixin Wei, Xiongwu Wu, Yongxian Wu, Shi Zhang, Shiji Zhao, Qiang Zhu, Thomas E. Cheatham, Daniel R. Roe, Adrian E. Roitberg, Carlos Simmerling, Darrin M. York, Maria C. Nagan, Kenneth M. Merz Jr.:
AmberTools. J. Chem. Inf. Model. 63(20): 6183-6191 (2023) - [j51]Fengyang Han, Dongxiao Hao, Xibing He, Luxuan Wang, Taoyu Niu, Junmei Wang:
Distribution of Bound Conformations in Conformational Ensembles for X-ray Ligands Predicted by the ANI-2X Machine Learning Potential. J. Chem. Inf. Model. 63(21): 6608-6618 (2023) - [j50]Min Pan, Quanli Pei, Yu Liu, Teng Li, Ellen Anne Huang, Junmei Wang, Jimmy Xiangji Huang:
SPRF: A semantic Pseudo-relevance Feedback enhancement for information retrieval via ConceptNet. Knowl. Based Syst. 274: 110602 (2023) - [j49]Yongming Li, Wuniu Liu, Junmei Wang, Xianfeng Yu, Chao Li:
Model Checking of Possibilistic Linear-Time Properties Based on Generalized Possibilistic Decision Processes. IEEE Trans. Fuzzy Syst. 31(10): 3495-3506 (2023) - [c20]Jie Yang, Chao Zhang, Pingzeng Liu, Junmei Wang:
Empirical Study on the Factors Influencing Asparagus Prices Based on VAR Model. ICBAR 2023: 344-349 - 2022
- [j48]Junmei Wang, Jin Liu:
Effects of a New Media Data Interaction System on Teaching Efficiency in Vocational Education. Int. J. Emerg. Technol. Learn. 17(7): 163-174 (2022) - [j47]Min Pan, Junmei Wang, Jimmy X. Huang, Angela Jennifer Huang, Qi Chen, Jinguang Chen:
A probabilistic framework for integrating sentence-level semantics via BERT into pseudo-relevance feedback. Inf. Process. Manag. 59(1): 102734 (2022) - [j46]Asuka A. Orr, Suliman Sharif, Junmei Wang, Alexander D. MacKerell Jr.:
Preserving the Integrity of Empirical Force Fields. J. Chem. Inf. Model. 62(16): 3825-3831 (2022) - [j45]Viet Hoang Man, Xibing He, Junmei Wang:
Stable Cavitation Interferes with Aβ16-22 Oligomerization. J. Chem. Inf. Model. 62(16): 3885-3895 (2022) - [j44]Jialu Wu, Junmei Wang, Zhenxing Wu, Shengyu Zhang, Yafeng Deng, Yu Kang, Dong-Sheng Cao, Chang-Yu Hsieh, Tingjun Hou:
ALipSol: An Attention-Driven Mixture-of-Experts Model for Lipophilicity and Solubility Prediction. J. Chem. Inf. Model. 62(23): 5975-5987 (2022) - [c19]Zhichao Chen, Junmei Wang, Xiwei Yang:
A Concept Net-based semantic constraint method for query expansion. WI/IAT 2022: 906-913 - 2021
- [j43]Pora Kim, Hanyang Li, Junmei Wang, Zhongming Zhao:
Landscape of drug-resistance mutations in kinase regulatory hotspots. Briefings Bioinform. 22(3) (2021) - [j42]Beihong Ji, Xibing He, Jingchen Zhai, Yuzhao Zhang, Viet Hoang Man, Junmei Wang:
Machine learning on ligand-residue interaction profiles to significantly improve binding affinity prediction. Briefings Bioinform. 22(5) (2021) - [j41]Yuzhao Zhang, Xibing He, Jingchen Zhai, Beihong Ji, Viet Hoang Man, Junmei Wang:
In silico binding profile characterization of SARS-CoV-2 spike protein and its mutants bound to human ACE2 receptor. Briefings Bioinform. 22(6) (2021) - [j40]Beihong Ji, Xibing He, Yuzhao Zhang, Jingchen Zhai, Viet Hoang Man, Shuhan Liu, Junmei Wang:
Incorporating structural similarity into a scoring function to enhance the prediction of binding affinities. J. Cheminformatics 13(1): 11 (2021) - [j39]Ercheng Wang, Weitao Fu, Dejun Jiang, Huiyong Sun, Junmei Wang, Xujun Zhang, Gaoqi Weng, Hui Liu, Peng Tao, Tingjun Hou:
VAD-MM/GBSA: A Variable Atomic Dielectric MM/GBSA Model for Improved Accuracy in Protein-Ligand Binding Free Energy Calculations. J. Chem. Inf. Model. 61(6): 2844-2856 (2021) - [j38]Yingxue Li, Wenxiao Jia, Junmei Wang, Jianying Guo, Qin Liu, Xiang Li, Guotong Xie, Fei Wang:
ALeRT-COVID: Attentive Lockdown-awaRe Transfer Learning for Predicting COVID-19 Pandemics in Different Countries. J. Heal. Informatics Res. 5(1): 98-113 (2021) - [c18]Chenyang Li, Chao Zhang, Junmei Wang, Yan Zhang, Pingzeng Liu, Xin Liu, Lianlian Liu, Yuanlong Wang:
Effects of ENSO on Climate and Garlic Yield in Main Garlic Production Areas of China. SmartIoT 2021: 283-288 - [c17]Liu Lianlian, Chao Zhang, Junmei Wang, Zhang Qing, Pingzeng Liu, Liu Chenyang, Yifei Sun:
The effect of COVID-19 on garlic prices. SmartIoT 2021: 322-326 - 2020
- [j37]Junmei Wang, Min Pan, Tingting He, Xiang Huang, Xueyan Wang, Xinhui Tu:
A Pseudo-relevance feedback framework combining relevance matching and semantic matching for information retrieval. Inf. Process. Manag. 57(6): 102342 (2020) - [j36]Junmei Wang:
Fast Identification of Possible Drug Treatment of Coronavirus Disease-19 (COVID-19) through Computational Drug Repurposing Study. J. Chem. Inf. Model. 60(6): 3277-3286 (2020) - [j35]Ercheng Wang, Hui Liu, Junmei Wang, Gaoqi Weng, Huiyong Sun, Zhe Wang, Yu Kang, Tingjun Hou:
Development and Evaluation of MM/GBSA Based on a Variable Dielectric GB Model for Predicting Protein-Ligand Binding Affinities. J. Chem. Inf. Model. 60(11): 5353-5365 (2020) - [j34]Dongxiao Hao, Xibing He, Beihong Ji, Shengli Zhang, Junmei Wang:
How Well Does the Extended Linear Interaction Energy Method Perform in Accurate Binding Free Energy Calculations? J. Chem. Inf. Model. 60(12): 6624-6633 (2020) - [j33]Xiao Xu, Xiaoshuang Liu, Yanni Kang, Xian Xu, Junmei Wang, Yuyao Sun, Quanhe Chen, Xiaoyu Jia, Xinyue Ma, Xiaoyan Meng, Xiang Li, Guotong Xie:
A Multi-directional Approach for Missing Value Estimation in Multivariate Time Series Clinical Data. J. Heal. Informatics Res. 4(4): 365-382 (2020)
2010 – 2019
- 2019
- [j32]Xibing He, Viet Hoang Man, Beihong Ji, Xiang-Qun Xie, Junmei Wang:
Calculate protein-ligand binding affinities with the extended linear interaction energy method: application on the Cathepsin S set in the D3R Grand Challenge 3. J. Comput. Aided Mol. Des. 33(1): 105-117 (2019) - [j31]Haixia Ge, Yuemin Bian, Xibing He, Xiang-Qun Xie, Junmei Wang:
Significantly different effects of tetrahydroberberrubine enantiomers on dopamine D1/D2 receptors revealed by experimental study and integrated in silico simulation. J. Comput. Aided Mol. Des. 33(4): 447-459 (2019) - [j30]Junmei Wang, Yubin Ge, Xiang-Qun Xie:
Development and Testing of Druglike Screening Libraries. J. Chem. Inf. Model. 59(1): 53-65 (2019) - [c16]Xiang Li, Yanni Kang, Xiaoyu Jia, Junmei Wang, Guotong Xie:
TASP: A Time-Phased Model for Sepsis Prediction. CinC 2019: 1-4 - [c15]Anqi Huang, Chao Zhang, Pingzeng Liu, Junmei Wang, Wanming Ren, Yong Zheng:
Input-Output Analysis of Chinese National Agricultural Science and Technology Park. ICAIS (2) 2019: 509-523 - [c14]Xiao Xu, Junmei Wang, Xian Xu, Yuyao Sun, Quanhe Chen, Xiang Li, Guotong Xie:
Estimating Missing Values in Multivariate-Time-Series Clinical Data using Gradient Boosting Tree on Temporal and Cross-variable Features. ICHI 2019: 1-3 - [c13]Hao Hu, Junmei Wang, Xinhui Tu, Tingting He:
CCNU_IRGroup @ TREC 2019 Deep Learning Track. TREC 2019 - 2018
- [j29]Guohua Qu, Weihua Qu, Junmei Wang, Haisheng Zhou, Zengliang Liu:
Factorial-Quality Scalar and an Extension of ELECTRE in Intuitionistic Fuzzy Sets. Int. J. Inf. Technol. Decis. Mak. 17(1): 183-208 (2018) - [j28]Jun Shang, Ben Hu, Junmei Wang, Feng Zhu, Yu Kang, Dan Li, Huiyong Sun, De-Xin Kong, Tingjun Hou:
Cheminformatic Insight into the Differences between Terrestrial and Marine Originated Natural Products. J. Chem. Inf. Model. 58(6): 1182-1193 (2018) - [j27]Na Liu, Wenfang Zhou, Yue Guo, Junmei Wang, Weitao Fu, Huiyong Sun, Dan Li, Mojie Duan, Tingjun Hou:
Molecular Dynamics Simulations Revealed the Regulation of Ligands to the Interactions between Androgen Receptor and Its Coactivator. J. Chem. Inf. Model. 58(8): 1652-1661 (2018) - [c12]Xueru Yu, Pingzeng Liu, Wanming Ren, Chao Zhang, Junmei Wang, Yong Zheng:
Safety Traceability System of Livestock and Poultry Industrial Chain. ICCCS (6) 2018: 3-12 - [c11]Chao Zhang, Junmei Wang:
The Internet of Things and Big Data in the Submarine Cable Release Process of Finite Element Simulation and Matlab Simulation. ICCCS (6) 2018: 133-143 - [c10]Lining Liu, Pingzeng Liu, Wanming Ren, Yong Zheng, Chao Zhang, Junmei Wang:
The Traceability Information Management Platform of Duck Product Industry Chain. ICCCS (6) 2018: 144-153 - [c9]Chao Zhang, Junmei Wang, Pingzeng Liu, Wanming Ren, Weijie Chen, Yanyan Wang:
Traffic Accident Time Series Analysis. ICCCS (2) 2018: 344-356 - [c8]Chao Zhang, Lei Zhang, Junmei Wang, Pingzeng Liu, Yong Zheng, Wanming Ren:
Based on Data Analysis and JC Retrofit Scheme of Dam Risk Function and the Simulation Experiment. ICCCS (6) 2018: 452-463 - [c7]Baojia Wang, Pingzeng Liu, Chao Zhang, Junmei Wang, Liu Peng:
Prediction of Garlic Price Based on ARIMA Model. ICCCS (1) 2018: 731-739 - 2014
- [j26]Qian Zhang, Wei Zhang, Youyong Li, Junmei Wang, Jian Zhang, Tingjun Hou:
MORT: a powerful foundational library for computational biology and CADD. J. Cheminformatics 6(1): 36 (2014) - [j25]Huiyong Sun, Youyong Li, Sheng Tian, Junmei Wang, Tingjun Hou:
P-loop Conformation Governed Crizotinib Resistance in G2032R-Mutated ROS1 Tyrosine Kinase: Clues from Free Energy Landscape. PLoS Comput. Biol. 10(7) (2014) - 2013
- [j24]Sheng Tian, Youyong Li, Junmei Wang, Xiaojie Xu, Lei Xu, Xiaohong Wang, Lei Chen, Tingjun Hou:
Drug-likeness analysis of traditional Chinese medicines: 2. Characterization of scaffold architectures for drug-like compounds, non-drug-like compounds, and natural compounds from traditional Chinese medicines. J. Cheminformatics 5: 5 (2013) - [j23]Sheng Tian, Youyong Li, Dan Li, Xiaojie Xu, Junmei Wang, Qian Zhang, Tingjun Hou:
Modeling Compound-Target Interaction Network of Traditional Chinese Medicines for Type II Diabetes Mellitus: Insight for Polypharmacology and Drug Design. J. Chem. Inf. Model. 53(7): 1787-1803 (2013) - [j22]Qian Zhang, Junmei Wang, Ginés D. Guerrero, José M. Cecilia, José M. García, Youyong Li, Horacio Emilio Pérez Sánchez, Tingjun Hou:
Accelerated Conformational Entropy Calculations Using Graphic Processing Units. J. Chem. Inf. Model. 53(8): 2057-2064 (2013) - [c6]Qian Zhang, José M. García, Junmei Wang, Tingjun Hou, Horacio Emilio Pérez Sánchez:
A GPU based Conformational Entropy Calculation Method. IWBBIO 2013: 735-743 - 2012
- [j21]Qian Zhang, Wei Zhang, Youyong Li, Junmei Wang, Liling Zhang, Tingjun Hou:
A rule-based algorithm for automatic bond type perception. J. Cheminformatics 4: 26 (2012) - [j20]Mingyun Shen, Sheng Tian, Youyong Li, Qian Li, Xiaojie Xu, Junmei Wang, Tingjun Hou:
Drug-likeness analysis of traditional Chinese medicines: 1. property distributions of drug-like compounds, non-drug-like compounds and natural compounds from traditional Chinese medicines. J. Cheminformatics 4: 31 (2012) - [j19]Dongyue Cao, Junmei Wang, Rui Zhou, Youyong Li, Huidong Yu, Tingjun Hou:
ADMET Evaluation in Drug Discovery. 11. PharmacoKinetics Knowledge Base (PKKB): A Comprehensive Database of Pharmacokinetic and Toxic Properties for Drugs. J. Chem. Inf. Model. 52(5): 1132-1137 (2012) - [j18]Junmei Wang, Tingjun Hou:
Develop and Test a Solvent Accessible Surface Area-Based Model in Conformational Entropy Calculations. J. Chem. Inf. Model. 52(5): 1199-1212 (2012) - 2011
- [j17]Tingjun Hou, Junmei Wang, Youyong Li, Wei Wang:
Assessing the performance of the molecular mechanics/Poisson Boltzmann surface area and molecular mechanics/generalized Born surface area methods. II. The accuracy of ranking poses generated from docking. J. Comput. Chem. 32(5): 866-877 (2011) - [j16]Junmei Wang, Tingjun Hou:
Application of molecular dynamics simulations in molecular property prediction II: Diffusion coefficient. J. Comput. Chem. 32(16): 3505-3519 (2011) - [j15]Tingjun Hou, Junmei Wang, Youyong Li, Wei Wang:
Assessing the Performance of the MM/PBSA and MM/GBSA Methods. 1. The Accuracy of Binding Free Energy Calculations Based on Molecular Dynamics Simulations. J. Chem. Inf. Model. 51(1): 69-82 (2011) - 2010
- [j14]Junmei Wang, Tingjun Hou:
Drug and Drug Candidate Building Block Analysis. J. Chem. Inf. Model. 50(1): 55-67 (2010)
2000 – 2009
- 2009
- [j13]Junmei Wang, Tingjun Hou, Xiaojie Xu:
Aqueous Solubility Prediction Based on Weighted Atom Type Counts and Solvent Accessible Surface Areas. J. Chem. Inf. Model. 49(3): 571-581 (2009) - 2007
- [j12]Tingjun Hou, Junmei Wang, Wei Zhang, Xiaojie Xu:
ADME Evaluation in Drug Discovery, 7. Prediction of Oral Absorption by Correlation and Classification. J. Chem. Inf. Model. 47(1): 208-218 (2007) - [j11]Tingjun Hou, Junmei Wang, Wei Zhang, Xiaojie Xu:
ADME Evaluation in Drug Discovery, 6. Can Oral Bioavailability in Humans Be Effectively Predicted by Simple Molecular Property-Based Rules? J. Chem. Inf. Model. 47(2): 460-463 (2007) - [j10]Junmei Wang, George Krudy, Tingjun Hou, Wei Zhang, George Holland, Xiaojie Xu:
Development of Reliable Aqueous Solubility Models and Their Application in Druglike Analysis. J. Chem. Inf. Model. 47(4): 1395-1404 (2007) - [j9]Jian-zhong Chen, Junmei Wang, Xiang-Qun Xie:
GPCR Structure-Based Virtual Screening Approach for CB2 Antagonist Search. J. Chem. Inf. Model. 47(4): 1626-1637 (2007) - [j8]Tingjun Hou, Junmei Wang, Youyong Li:
ADME Evaluation in Drug Discovery, 8. The Prediction of Human Intestinal Absorption by a Support Vector Machine. J. Chem. Inf. Model. 47(6): 2408-2415 (2007) - 2006
- [j7]Junmei Wang, George Krudy, Xiang-Qun Xie, Chengde Wu, George Holland:
Genetic Algorithm-Optimized QSPR Models for Bioavailability, Protein Binding, and Urinary Excretion. J. Chem. Inf. Model. 46(6): 2674-2683 (2006) - [c5]Junmei Wang, Wynne Hsu, Mong-Li Lee, Chang Sheng:
A Partition-Based Approach to Graph Mining. ICDE 2006: 74 - 2005
- [j6]Junmei Wang, Romain M. Wolf, James W. Caldwell, Peter A. Kollman, David A. Case:
Junmei Wang, Romain M. Wolf, James W. Caldwell, Peter A. Kollman, and David A. Case, "Development and testing of a general amber force field" Journal of Computational Chemistry(2004) 25(9) 1157-1174. J. Comput. Chem. 26(1): 114- (2005) - [c4]Junmei Wang, Wynne Hsu, Mong-Li Lee:
A framework for mining topological patterns in spatio-temporal databases. CIKM 2005: 429-436 - [c3]Junmei Wang, Wynne Hsu, Mong-Li Lee:
Mining Generalized Spatio-Temporal Patterns. DASFAA 2005: 649-661 - [p1]Junmei Wang, Wynne Hsu, Mong-Li Lee:
Mining in Spatiotemporal Databases. Spatial Databases 2005: 272-293 - 2004
- [j5]Junmei Wang, Romain M. Wolf, James W. Caldwell, Peter A. Kollman, David A. Case:
Development and testing of a general amber force field. J. Comput. Chem. 25(9): 1157-1174 (2004) - [c2]Junmei Wang, Wynne Hsu, Mong-Li Lee:
Discovering Geographical Features for Location-Based Services. DASFAA 2004: 244-254 - [c1]Junmei Wang, Wynne Hsu, Mong-Li Lee, Jason Tsong-Li Wang:
FlowMiner: Finding Flow Patterns in Spatio-Temporal Databases. ICTAI 2004: 14-21 - 2003
- [j4]Yong Duan, Chun Wu, Shibasish Chowdhury, Mathew C. Lee, Guoming Xiong, Wei Zhang, Rong Yang, Piotr Cieplak, Ray Luo, Tai-Sung Lee, James W. Caldwell, Junmei Wang, Peter A. Kollman:
A point-charge force field for molecular mechanics simulations of proteins based on condensed-phase quantum mechanical calculations. J. Comput. Chem. 24(16): 1999-2012 (2003) - 2001
- [j3]Junmei Wang, Peter A. Kollman:
Automatic parameterization of force field by systematic search and genetic algorithms. J. Comput. Chem. 22(12): 1219-1228 (2001) - 2000
- [j2]Junmei Wang, Piotr Cieplak, Peter A. Kollman:
How well does a restrained electrostatic potential (RESP) model perform in calculating conformational energies of organic and biological molecules? J. Comput. Chem. 21(12): 1049-1074 (2000)
1990 – 1999
- 1999
- [j1]Tingjun Hou, Junmei Wang, N. Liao, Xiaojie Xu:
Applications of Genetic Algorithms on the Structure-Activity Relationship Analysis of Some Cinnamamides. J. Chem. Inf. Comput. Sci. 39(5): 775-781 (1999)
Coauthor Index
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