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Journal Articles
- 2020
[j7]Magdalena E. Strauß
, Paul D. W. Kirk, John E. Reid, Lorenz Wernisch:
GPseudoClust: deconvolution of shared pseudo-profiles at single-cell resolution. Bioinform. 36(5): 1484-1491 (2020)- 2019
- [j6]Magdalena E. Strauß, John E. Reid, Lorenz Wernisch:
GPseudoRank: a permutation sampler for single cell orderings. Bioinform. 35(4): 611-618 (2019) - 2018
- [j5]Christopher A. Penfold, Anastasiya Sybirna, John E. Reid, Yun Huang, Lorenz Wernisch, Zoubin Ghahramani, Murray Grant, M. Azim Surani:
Branch-recombinant Gaussian processes for analysis of perturbations in biological time series. Bioinform. 34(17): i1005-i1013 (2018) - 2017
- [j4]Evelina Gabasova, John E. Reid, Lorenz Wernisch:
Clusternomics: Integrative context-dependent clustering for heterogeneous datasets. PLoS Comput. Biol. 13(10) (2017) - 2016
- [j3]John E. Reid, Lorenz Wernisch:
Pseudotime estimation: deconfounding single cell time series. Bioinform. 32(19): 2973-2980 (2016) - 2010
- [j2]Hashem Koohy, Nigel P. Dyer, John E. Reid, Georgy Koentges, Sascha Ott:
An alignment-free model for comparison of regulatory sequences. Bioinform. 26(19): 2391-2397 (2010) - 2009
- [j1]John E. Reid, Sascha Ott, Lorenz Wernisch:
Transcriptional programs: Modelling higher order structure in transcriptional control. BMC Bioinform. 10 (2009)
Informal and Other Publications
- 2019
- [i2]Dan Andrei Calian, Peter Roelants, Jacques Calì, Ben Carr, Krishna Dubba, John E. Reid, Dell Zhang:
SCRAM: Spatially Coherent Randomized Attention Maps. CoRR abs/1905.10308 (2019) - [i1]Alex Hawkins-Hooker, Henry Kenlay, John E. Reid:
Projection layers improve deep learning models of regulatory DNA function. F1000Research 8: 151 (2019)
Coauthor Index
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