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ORCIDBreschine Cummins
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Journal Articles
- 2024
[j14]William Duncan, Breschine Cummins, Tomás Gedeon:
Subnetwork inclusion and switching of multilevel Boolean networks preserve parameter graph structure and dynamics. Frontiers Appl. Math. Stat. 10 (2024)- 2023
- [j13]Tomás Gedeon
, Breschine Cummins:
Oscillator death in coupled biochemical oscillators. Math. Control. Signals Syst. 35(4): 781-801 (2023) - 2022
- [j12]Francis C. Motta, Robert C. Moseley, Bree Cummins, Anastasia Deckard, Steven B. Haase:
Conservation of dynamic characteristics of transcriptional regulatory elements in periodic biological processes. BMC Bioinform. 23(1): 94 (2022) - [j11]Breschine Cummins, Francis C. Motta, Robert C. Moseley, Anastasia Deckard, Sophia Campione, Marcio Gameiro, Tomás Gedeon, Konstantin Mischaikow, Steven B. Haase:
Experimental guidance for discovering genetic networks through hypothesis reduction on time series. PLoS Comput. Biol. 18(10): 1010145 (2022) - [j10]Bree Cummins, Marcio Gameiro, Tomás Gedeon, Shane Kepley, Konstantin Mischaikow, Lun Zhang:
Extending Combinatorial Regulatory Network Modeling to Include Activity Control and Decay Modulation. SIAM J. Appl. Dyn. Syst. 21(3): 2096-2125 (2022) - [j9]Peter Crawford-Kahrl, Bree Cummins, Tomás Gedeon:
Joint realizability of monotone Boolean functions. Theor. Comput. Sci. 922: 447-474 (2022) - 2020
- [j8]Ying Xin, Bree Cummins, Tomás Gedeon:
Multistability in the epithelial-mesenchymal transition network. BMC Bioinform. 21(1): 71 (2020) - 2019
- [j7]Peter Crawford-Kahrl, Bree Cummins, Tomás Gedeon:
Comparison of Combinatorial Signatures of Global Network Dynamics Generated by Two Classes of ODE Models. SIAM J. Appl. Dyn. Syst. 18(1): 418-457 (2019) - 2018
- [j6]Tomás Gedeon, Bree Cummins, Shaun Harker, Konstantin Mischaikow:
Identifying robust hysteresis in networks. PLoS Comput. Biol. 14(4) (2018) - [j5]Bree Cummins, Tomás Gedeon, Shaun Harker, Konstantin Mischaikow:
Model Rejection and Parameter Reduction via Time Series. SIAM J. Appl. Dyn. Syst. 17(2): 1589-1616 (2018) - 2016
- [j4]Bree Cummins, Tomás Gedeon, Shaun Harker, Konstantin Mischaikow, Kafung Mok:
Combinatorial Representation of Parameter Space for Switching Networks. SIAM J. Appl. Dyn. Syst. 15(4): 2176-2212 (2016) - 2015
- [j3]Bree Cummins, Tomás Gedeon, Kelly Spendlove:
On the Efficacy of State Space Reconstruction Methods in Determining Causality. SIAM J. Appl. Dyn. Syst. 14(1): 335-381 (2015) - 2012
- [j2]Bree Cummins, Ricardo Cortez, Ivo M. Foppa, Justin Walbeck, James Mac Hyman:
A Spatial Model of Mosquito Host-Seeking Behavior. PLoS Comput. Biol. 8(5) (2012) - 2010
- [j1]Ricardo Cortez, Bree Cummins, Karin Leiderman, Douglas Varela:
Computation of three-dimensional Brinkman flows using regularized methods. J. Comput. Phys. 229(20): 7609-7624 (2010)
Conference and Workshop Papers
- 2018
- [c2]Zane Huttinga, Bree Cummins, Tomas Geadon:
Combinatorial Dynamics for Regulatory Networks. MLCSB 2018: 56-73 - 2017
- [c1]Bree Cummins, Tomás Gedeon, Shaun Harker, Konstantin Mischaikow:
Database of Dynamic Signatures Generated by Regulatory Networks (DSGRN). CMSB 2017: 300-308
Informal and Other Publications
- 2022
- [i2]Robin Belton, Bree Cummins, Brittany Terese Fasy, Tomás Gedeon:
Extremal Event Graphs: A (Stable) Tool for Analyzing Noisy Time Series Data. CoRR abs/2203.09552 (2022) - 2019
- [i1]Robert Nerem, Peter Crawford-Kahrl, Bree Cummins, Tomás Gedeon:
A poset metric from the directed maximum common edge subgraph. CoRR abs/1910.14638 (2019)
Coauthor Index
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