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ORCIDYiannis N. Kaznessis
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Journal Articles
- 2018
[j17]Michail Vlysidis, Yiannis N. Kaznessis
:
A linearization method for probability moment equations. Comput. Chem. Eng. 112: 1-5 (2018)- [j16]Michail Vlysidis, Yiannis N. Kaznessis:
On Differences between Deterministic and Stochastic Models of Chemical Reactions: Schlögl Solved with ZI-Closure. Entropy 20(9): 678 (2018) - [j15]Michail Vlysidis, Yiannis N. Kaznessis:
Solving Stochastic Reaction Networks with Maximum Entropy Lagrange Multipliers. Entropy 20(9): 700 (2018) - 2012
- [j14]Konstantinos Biliouris, David Babson, Claudia Schmidt-Dannert, Yiannis N. Kaznessis:
Stochastic simulations of a synthetic bacteria-yeast ecosystem. BMC Syst. Biol. 6: 58 (2012) - 2011
- [j13]Konstantinos Biliouris, Prodromos Daoutidis, Yiannis N. Kaznessis:
Stochastic simulations of the tetracycline operon. BMC Syst. Biol. 5: 9 (2011) - [j12]Marie-Nathalie Contou-Carrere, Vassilios Sotiropoulos, Yiannis N. Kaznessis, Prodromos Daoutidis:
Model reduction of multi-scale chemical Langevin equations. Syst. Control. Lett. 60(1): 75-86 (2011) - 2010
- [j11]Emma M. B. Weeding, Jason Houle, Yiannis N. Kaznessis:
SynBioSS designer: a web-based tool for the automated generation of kinetic models for synthetic biological constructs. Briefings Bioinform. 11(4): 394-402 (2010) - 2009
- [j10]Dan S. Bolintineanu, Abdallah Sayyed-Ahmad, H. Ted Davis, Yiannis N. Kaznessis:
Poisson-Nernst-Planck Models of Nonequilibrium Ion Electrodiffusion through a Protegrin Transmembrane Pore. PLoS Comput. Biol. 5(1) (2009) - [j9]Vassilios Sotiropoulos, Marie-Nathalie Contou-Carrere, Prodromos Daoutidis, Yiannis N. Kaznessis:
Model Reduction of Multiscale Chemical Langevin Equations: A Numerical Case Study. IEEE ACM Trans. Comput. Biol. Bioinform. 6(3): 470-482 (2009) - 2008
- [j8]Anthony D. Hill, Jonathan R. Tomshine, Emma M. B. Weeding, Vassilios Sotiropoulos, Yiannis N. Kaznessis:
SynBioSS: the synthetic biology modeling suite. Bioinform. 24(21): 2551-2553 (2008) - 2007
- [j7]Vassilios Sotiropoulos, Yiannis N. Kaznessis:
Synthetic tetracycline-inducible regulatory networks: computer-aided design of dynamic phenotypes. BMC Syst. Biol. 1: 7 (2007) - [j6]Yiannis N. Kaznessis:
Models for synthetic biology. BMC Syst. Biol. 1: 47 (2007) - 2006
- [j5]Howard M. Salis, Vassilios Sotiropoulos, Yiannis N. Kaznessis:
Multiscale Hy3S: Hybrid stochastic simulation for supercomputers. BMC Bioinform. 7: 93 (2006) - [j4]Yuhua Duan, Boojala V. B. Reddy, Yiannis N. Kaznessis:
Residue Conservation Information for Generating near-native Structures in Protein-protein Docking. J. Bioinform. Comput. Biol. 4(4): 793-806 (2006) - 2005
- [j3]Howard M. Salis, Yiannis N. Kaznessis:
Numerical simulation of stochastic gene circuits. Comput. Chem. Eng. 29(3): 577-588 (2005) - [j2]Boojala V. B. Reddy, Yiannis N. Kaznessis:
A Quantitative Analysis of Interfacial Amino Acid Conservation in Protein-protein Hetero Complexes. J. Bioinform. Comput. Biol. 3(5): 1137-1150 (2005) - 2001
- [j1]Yiannis N. Kaznessis, Mark E. Snow, C. John Blankley:
Prediction of blood-brain partitioning using Monte Carlo simulations of molecules in water. J. Comput. Aided Mol. Des. 15(8): 697-708 (2001)
Conference and Workshop Papers
- 2008
- [c1]Yiannis N. Kaznessis, Vassilios Sotiropoulos, Anthony D. Hill, Jonathan R. Tomshine, Katherine Volzing, John Barrett, Emma M. B. Weeding:
Multiscale Models for Synthetic Biology. BIOCOMP 2008: 835-837
Coauthor Index
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