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2020 – today
- 2023
[j24]Sunghwan Kim
, Jie Chen, Tiejun Cheng, Asta Gindulyte, Jia He, Siqian He, Qingliang Li, Benjamin A. Shoemaker, Paul A. Thiessen, Bo Yu, Leonid Zaslavsky, Jian Zhang, Evan E. Bolton:
PubChem 2023 update. Nucleic Acids Res. 51(D1): 1373-1380 (2023)- [c1]Qingliang Li, Sunghwan Kim, Leonid Zaslavsky, Tiejun Cheng, Bo Yu, Evan E. Bolton:
Resource Description Framework (RDF) Modeling of Named Entity Co-occurrences Derived from Biomedical Literature in the PubChemRDF. SWAT4HCLS 2023: 32-41 - 2021
- [j23]Leonid Zaslavsky, Tiejun Cheng, Asta Gindulyte, Siqian He, Sunghwan Kim, Qingliang Li, Paul A. Thiessen, Bo Yu, Evan Bolton:
Discovering and Summarizing Relationships Between Chemicals, Genes, Proteins, and Diseases in PubChem. Frontiers Res. Metrics Anal. 6: 689059 (2021) - [j22]Sunghwan Kim, Jie Chen, Tiejun Cheng, Asta Gindulyte, Jia He, Siqian He, Qingliang Li, Benjamin A. Shoemaker, Paul A. Thiessen, Bo Yu, Leonid Zaslavsky, Jian Zhang, Evan Bolton:
PubChem in 2021: new data content and improved web interfaces. Nucleic Acids Res. 49(Database-Issue): D1388-D1395 (2021) - 2020
- [j21]Sushma Naithani, Parul Gupta, Justin Preece, Peter D'Eustachio, Justin Elser, Priyanka Garg, Daemon A. Dikeman, Jason Kiff, Justin Cook, Andrew Olson, Sharon Wei, Marcela K. Tello-Ruiz, Antonio Fabregat Mundo, Alfonso Muñoz-Pomer Fuentes, Suhaib Mohammed, Tiejun Cheng, Evan Bolton, Irene Papatheodorou, Lincoln Stein, Doreen Ware, Pankaj Jaiswal:
Plant Reactome: a knowledgebase and resource for comparative pathway analysis. Nucleic Acids Res. 48(Database-Issue): D1093-D1103 (2020)
2010 – 2019
- 2019
- [j20]Sunghwan Kim, Paul A. Thiessen, Tiejun Cheng, Jian Zhang, Asta Gindulyte, Evan Bolton:
PUG-View: programmatic access to chemical annotations integrated in PubChem. J. Cheminformatics 11(1): 56:1-56:11 (2019) - [j19]Sunghwan Kim, Jie Chen, Tiejun Cheng, Asta Gindulyte, Jia He, Siqian He, Qingliang Li, Benjamin A. Shoemaker, Paul A. Thiessen, Bo Yu, Leonid Zaslavsky, Jian Zhang, Evan Bolton:
PubChem 2019 update: improved access to chemical data. Nucleic Acids Res. 47(Database-Issue): D1102-D1109 (2019) - 2018
- [j18]Sunghwan Kim, Paul A. Thiessen, Tiejun Cheng, Bo Yu, Evan Bolton:
An update on PUG-REST: RESTful interface for programmatic access to PubChem. Nucleic Acids Res. 46(Webserver-Issue): W563-W570 (2018) - [j17]Tiejun Cheng, Panpan Wang, Qianyi Lu:
Risk scenario prediction for sudden water pollution accidents based on Bayesian networks. Int. J. Syst. Assur. Eng. Manag. 9(5): 1165-1177 (2018) - 2017
- [j16]Amrita Roy Choudhury, Tiejun Cheng, Lon Phan, Stephen H. Bryant, Yanli Wang:
Supporting precision medicine by data mining across multi-disciplines: an integrative approach for generating comprehensive linkages between single nucleotide variants (SNVs) and drug-binding sites. Bioinform. 33(11): 1621-1629 (2017) - [j15]Takako Takeda, Ming Hao, Tiejun Cheng, Stephen H. Bryant, Yanli Wang:
Predicting drug-drug interactions through drug structural similarities and interaction networks incorporating pharmacokinetics and pharmacodynamics knowledge. J. Cheminformatics 9(1): 16:1-16:9 (2017) - [j14]Yanli Wang, Stephen H. Bryant, Tiejun Cheng, Jiyao Wang, Asta Gindulyte, Benjamin A. Shoemaker, Paul A. Thiessen, Siqian He, Jian Zhang:
PubChem BioAssay: 2017 update. Nucleic Acids Res. 45(Database-Issue): D955-D963 (2017) - [j13]Tiejun Cheng, Qianli Xu, Fengping Wu:
Research on the adaptability evaluation model for emergency response plan based on 2-tuple linguistic. Int. J. Syst. Assur. Eng. Manag. 8(2s): 954-960 (2017) - 2016
- [j12]Sunghwan Kim, Paul A. Thiessen, Tiejun Cheng, Bo Yu, Benjamin A. Shoemaker, Jiyao Wang, Evan Bolton, Yanli Wang, Stephen H. Bryant:
Literature information in PubChem: associations between PubChem records and scientific articles. J. Cheminformatics 8(1): 32:1-32:15 (2016) - 2014
- [j11]Yongmei Pan, Tiejun Cheng, Yanli Wang, Stephen H. Bryant:
Pathway Analysis for Drug Repositioning Based on Public Database Mining. J. Chem. Inf. Model. 54(2): 407-418 (2014) - [j10]Yanli Wang, Tugba O. Suzek, Jian Zhang, Jiyao Wang, Siqian He, Tiejun Cheng, Benjamin A. Shoemaker, Asta Gindulyte, Stephen H. Bryant:
PubChem BioAssay: 2014 update. Nucleic Acids Res. 42(Database-Issue): 1075-1082 (2014) - 2012
- [j9]Tiejun Cheng, Yanli Wang, Stephen H. Bryant:
FSelector: a Ruby gem for feature selection. Bioinform. 28(21): 2851-2852 (2012) - 2011
- [j8]Tiejun Cheng, Qingliang Li, Yanli Wang, Stephen H. Bryant:
Binary Classification of Aqueous Solubility Using Support Vector Machines with Reduction and Recombination Feature Selection. J. Chem. Inf. Model. 51(2): 229-236 (2011) - [j7]Tiejun Cheng, Qingliang Li, Yanli Wang, Stephen H. Bryant:
Identifying Compound-Target Associations by Combining Bioactivity Profile Similarity Search and Public Databases Mining. J. Chem. Inf. Model. 51(9): 2440-2448 (2011) - 2010
- [j6]Tiejun Cheng, Yanli Wang, Stephen H. Bryant:
Investigating the correlations among the chemical structures, bioactivity profiles and molecular targets of small molecules. Bioinform. 26(22): 2881-2888 (2010) - [j5]Tiejun Cheng, Zhihai Liu, Renxiao Wang:
A knowledge-guided strategy for improving the accuracy of scoring functions in binding affinity prediction. BMC Bioinform. 11: 193 (2010) - [j4]Xun Li, Yan Li, Tiejun Cheng, Zhihai Liu, Renxiao Wang:
Evaluation of the performance of four molecular docking programs on a diverse set of protein-ligand complexes. J. Comput. Chem. 31(11): 2109-2125 (2010)
2000 – 2009
- 2009
- [j3]Tiejun Cheng, Xun Li, Yan Li, Zhihai Liu, Renxiao Wang:
Comparative Assessment of Scoring Functions on a Diverse Test Set. J. Chem. Inf. Model. 49(4): 1079-1093 (2009) - 2007
- [j2]Yuan Zhao, Tiejun Cheng, Renxiao Wang:
Automatic Perception of Organic Molecules Based on Essential Structural Information. J. Chem. Inf. Model. 47(4): 1379-1385 (2007) - [j1]Tiejun Cheng, Yuan Zhao, Xun Li, Fu Lin, Yong Xu, Xing-long Zhang, Yan Li, Renxiao Wang, Luhua Lai:
Computation of Octanol-Water Partition Coefficients by Guiding an Additive Model with Knowledge. J. Chem. Inf. Model. 47(6): 2140-2148 (2007)
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