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Journal Articles
- 2013
[j8]Jed Zaretzki, Charles Bergeron, Tao-wei Huang, Patrik Rydberg, S. Joshua Swamidass
, Curt M. Breneman:
RS-WebPredictor: a server for predicting CYP-mediated sites of metabolism on drug-like molecules. Bioinform. 29(4): 497-498 (2013)- [j7]Tao-wei Huang, Jed Zaretzki, Charles Bergeron, Kristin P. Bennett, Curt M. Breneman:
DR-Predictor: Incorporating Flexible Docking with Specialized Electronic Reactivity and Machine Learning Techniques to Predict CYP-Mediated Sites of Metabolism. J. Chem. Inf. Model. 53(12): 3352-3366 (2013) - 2012
- [j6]Jed Zaretzki, Patrik Rydberg, Charles Bergeron, Kristin P. Bennett, Lars Olsen, Curt M. Breneman:
RS-Predictor Models Augmented with SMARTCyp Reactivities: Robust Metabolic Regioselectivity Predictions for Nine CYP Isozymes. J. Chem. Inf. Model. 52(6): 1637-1659 (2012) - [j5]Charles Bergeron, Gregory M. Moore, Jed Zaretzki, Curt M. Breneman, Kristin P. Bennett:
Fast Bundle Algorithm for Multiple-Instance Learning. IEEE Trans. Pattern Anal. Mach. Intell. 34(6): 1068-1079 (2012) - 2011
- [j4]Jed Zaretzki, Charles Bergeron, Patrik Rydberg, Tao-wei Huang, Kristin P. Bennett, Curt M. Breneman:
RS-Predictor: A New Tool for Predicting Sites of Cytochrome P450-Mediated Metabolism Applied to CYP 3A4. J. Chem. Inf. Model. 51(7): 1667-1689 (2011) - [j3]Charles Bergeron, Gregory M. Moore, Michael P. Krein, Curt M. Breneman, Kristin P. Bennett:
Exploiting Domain Knowledge for Improved Quantitative High-Throughput Screening Curve Fitting. J. Chem. Inf. Model. 51(11): 2808-2820 (2011) - [j2]Gregory M. Moore, Charles Bergeron, Kristin P. Bennett:
Model selection for primal SVM. Mach. Learn. 85(1-2): 175-208 (2011) - 2005
- [j1]Charles Bergeron, Farida Cheriet, Janet Lenore Ronsky, Ronald F. Zernicke, Hubert Labelle:
Prediction of anterior scoliotic spinal curve from trunk surface using support vector regression. Eng. Appl. Artif. Intell. 18(8): 973-983 (2005)
Conference and Workshop Papers
- 2009
- [c3]Gregory M. Moore, Charles Bergeron, Kristin P. Bennett:
Nonsmooth Bilevel Programming for Hyperparameter Selection. ICDM Workshops 2009: 374-381 - 2008
- [c2]Charles Bergeron, Jed Zaretzki, Curt M. Breneman, Kristin P. Bennett:
Multiple instance ranking. ICML 2008: 48-55 - 2005
- [c1]Charles Bergeron, Hubert Labelle, Janet Lenore Ronsky, Ronald F. Zernicke:
Robust prediction of three-dimensional spinal curve from back surface for non-invasive follow-up of scoliosis. Medical Imaging: Image-Guided Procedures 2005
Informal and Other Publications
- 2011
- [i1]Charles Bergeron, Theresa Hepburn, C. Matthew Sundling, Michael P. Krein, William P. Katt, Nagamani Sukumar, Curt M. Breneman, Kristin P. Bennett:
Prediction of peptide bonding affinity: kernel methods for nonlinear modeling. CoRR abs/1108.5397 (2011)
Coauthor Index
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