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ORCIDIgor N. Berezovsky
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2020 – today
- 2023
[j20]Zhen Wah Tan, Wei-Ven Tee, Enrico Guarnera, Igor N. Berezovsky
:
AlloMAPS 2: allosteric fingerprints of the AlphaFold and Pfam-trRosetta predicted structures for engineering and design. Nucleic Acids Res. 51(D1): 345-351 (2023)- 2021
- [j19]Melvin Yin, Alexander Goncearenco, Igor N. Berezovsky:
Deriving and Using Descriptors of Elementary Functions in Rational Protein Design. Frontiers Bioinform. 1 (2021) - 2020
- [j18]Zhen Wah Tan, Enrico Guarnera, Wei-Ven Tee, Igor N. Berezovsky:
AlloSigMA 2: paving the way to designing allosteric effectors and to exploring allosteric effects of mutations. Nucleic Acids Res. 48(Webserver-Issue): W116-W124 (2020)
2010 – 2019
- 2019
- [j17]Zhen Wah Tan, Wei-Ven Tee, Enrico Guarnera, Lauren Booth, Igor N. Berezovsky:
AlloMAPS: allosteric mutation analysis and polymorphism of signaling database. Nucleic Acids Res. 47(Database-Issue): D265-D270 (2019) - 2018
- [j16]Wei-Ven Tee, Enrico Guarnera, Igor N. Berezovsky:
Reversing allosteric communication: From detecting allosteric sites to inducing and tuning targeted allosteric response. PLoS Comput. Biol. 14(6) (2018) - [j15]Zhen Wah Tan, Enrico Guarnera, Igor N. Berezovsky:
Exploring chromatin hierarchical organization via Markov State Modelling. PLoS Comput. Biol. 14(12) (2018) - 2017
- [j14]Enrico Guarnera, Zhen Wah Tan, Zejun Zheng, Igor N. Berezovsky:
AlloSigMA: allosteric signaling and mutation analysis server. Bioinform. 33(24): 3996-3998 (2017) - 2016
- [j13]Zejun Zheng, Alexander Goncearenco, Igor N. Berezovsky:
Nucleotide binding database NBDB - a collection of sequence motifs with specific protein-ligand interactions. Nucleic Acids Res. 44(Database-Issue): 301-307 (2016) - [j12]Enrico Guarnera, Igor N. Berezovsky:
Structure-Based Statistical Mechanical Model Accounts for the Causality and Energetics of Allosteric Communication. PLoS Comput. Biol. 12(3) (2016) - 2013
- [j11]Alexander Goncearenco, Simon Mitternacht, Taipang Yong, Birgit Eisenhaber, Frank Eisenhaber, Igor N. Berezovsky:
SPACER: server for predicting allosteric communication and effects of regulation. Nucleic Acids Res. 41(Webserver-Issue): 266-272 (2013) - 2011
- [j10]Alexander Goncearenco, Igor N. Berezovsky:
Computational reconstruction of primordial prototypes of elementary functional loops in modern proteins. Bioinform. 27(17): 2368-2375 (2011) - [j9]Simon Mitternacht, Igor N. Berezovsky:
Binding Leverage as a Molecular Basis for Allosteric Regulation. PLoS Comput. Biol. 7(9) (2011) - [j8]Simon Mitternacht, Igor N. Berezovsky:
Coherent Conformational Degrees of Freedom as a Structural Basis for Allosteric Communication. PLoS Comput. Biol. 7(12) (2011) - 2010
- [j7]Alexander Goncearenco, Igor N. Berezovsky:
Prototypes of elementary functional loops unravel evolutionary connections between protein functions. Bioinform. 26(18) (2010)
2000 – 2009
- 2008
- [j6]Grzegorz Koczyk, Igor N. Berezovsky:
Domain Hierarchy and closed Loops (DHcL): a server for exploring hierarchy of protein domain structure. Nucleic Acids Res. 36(Web-Server-Issue): 239-245 (2008) - 2007
- [j5]Konstantin B. Zeldovich, Igor N. Berezovsky, Eugene I. Shakhnovich:
Protein and DNA Sequence Determinants of Thermophilic Adaptation. PLoS Comput. Biol. 3(1) (2007) - [j4]Igor N. Berezovsky, Konstantin B. Zeldovich, Eugene I. Shakhnovich:
Positive and Negative Design in Stability and Thermal Adaptation of Natural Proteins. PLoS Comput. Biol. 3(3) (2007) - 2006
- [j3]Georg Schneider, Georg Neuberger, Michael Wildpaner, Sun Tian, Igor N. Berezovsky, Frank Eisenhaber:
Application of a sensitive collection heuristic for very large protein families: Evolutionary relationship between adipose triglyceride lipase (ATGL) and classic mammalian lipases. BMC Bioinform. 7: 164 (2006) - 2005
- [j2]Igor N. Berezovsky, William W. Chen, Paul J. Choi, Eugene I. Shakhnovich:
Entropic Stabilization of Proteins and Its Proteomic Consequences. PLoS Comput. Biol. 1(4) (2005) - 2000
- [j1]Igor N. Berezovsky, Natalia G. Esipova, Vladimir G. Tumanyan:
Hierarchy of Regions of Amino Acid Sequence with Respect to Their Role in the Protein Spatial Structure. J. Comput. Biol. 7(1-2): 183-192 (2000)
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