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Journal Articles
- 2016
[j8]Jiarui Ding, Sohrab P. Shah, Anne Condon:
densityCut: an efficient and versatile topological approach for automatic clustering of biological data. Bioinform. 32(17): 2567-2576 (2016)- 2013
- [j7]Jiarui Ding, Sohrab P. Shah:
A robust hidden semi-Markov model with application to aCGH data processing. Int. J. Data Min. Bioinform. 8(4): 427-442 (2013) - 2012
- [j6]Jiarui Ding, Ali Bashashati, Andrew Roth
, Arusha Oloumi, Kane Tse, Thomas Zeng, Gholamreza Haffari, Martin Hirst, Marco A. Marra, Anne Condon, Sam Aparicio, Sohrab P. Shah:
Feature-based classifiers for somatic mutation detection in tumour-normal paired sequencing data. Bioinform. 28(2): 167-175 (2012) - [j5]Andrew Roth, Jiarui Ding, Ryan D. Morin, Anamaria Crisan, Gavin Ha, Ryan Giuliany, Ali Bashashati, Martin Hirst, Gulisa Turashvili, Arusha Oloumi, Marco A. Marra, Sam Aparicio, Sohrab P. Shah:
JointSNVMix: a probabilistic model for accurate detection of somatic mutations in normal/tumour paired next-generation sequencing data. Bioinform. 28(7): 907-913 (2012) - 2011
- [j4]Jiarui Ding, Jin-Hong Shi, Fang-Xiang Wu:
SVM-RFE based feature selection for tandem mass spectrum quality assessment. Int. J. Data Min. Bioinform. 5(1): 73-88 (2011) - 2010
- [j3]An-Min Zou, Jin-Hong Shi, Jiarui Ding, Fang-Xiang Wu:
Charge state determination of peptide tandem mass spectra using support vector machine (SVM). IEEE Trans. Inf. Technol. Biomed. 14(3): 552-558 (2010) - 2009
- [j2]An-Min Zou, Fang-Xiang Wu, Jiarui Ding, Guy G. Poirier:
Quality assessment of tandem mass spectra using support vector machine (SVM). BMC Bioinform. 10(S-1) (2009) - 2008
- [j1]Fang-Xiang Wu, Jiarui Ding, Guy G. Poirier:
An approach to assessing peptide mass spectral quality without prior information. Int. J. Funct. Informatics Pers. Medicine 1(2): 140-155 (2008)
Conference and Workshop Papers
- 2013
- [c6]Kai Liu, Jinwei He, Jiarui Ding, Yuanchao Zhu, Zhimin Liu:
Base station power model and application for energy efficient LTE. ICCT 2013: 86-92 - 2010
- [c5]Wenjun Chris Lin, Fang-Xiang Wu, Jinhon Shi, Jiarui Ding, Wenjun Zhang:
An adaptive approach to denoising tandem mass spectra. BIBM Workshops 2010: 89-94 - [c4]Jiarui Ding, Sohrab P. Shah:
Robust hidden semi-Markov modeling of array CGH data. BIBM 2010: 603-608 - 2008
- [c3]An-Min Zou, Jiarui Ding, Jin-Hong Shi, Fang-Xiang Wu:
Charge state determination of peptide tandem mass spectra using support vector machine (SVM). BIBE 2008: 1-6 - [c2]Jiarui Ding, Jin-Hong Shi, An-Min Zou, Fang-Xiang Wu:
Feature Selection for Tandem Mass Spectrum Quality Assessment. BIBM 2008: 310-313 - 2007
- [c1]Fang-Xiang Wu, Jiarui Ding, Guy G. Poirier:
A Framework for Mass Spectral Quality Assessment without Prior Information. BIBE 2007: 1419-1423
Informal and Other Publications
- 2023
- [i2]Jiarui Ding, Sayem Nazmuz Zaman, P. Y. Chen, David Wang:
Latent Space Inference For Spatial Transcriptomics. CoRR abs/2311.00330 (2023) - [i1]Nikhil Shenoy, Prudencio Tossou, Emmanuel Noutahi, Hadrien Mary, Dominique Beaini, Jiarui Ding:
Role of Structural and Conformational Diversity for Machine Learning Potentials. CoRR abs/2311.00862 (2023)
Coauthor Index
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