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Books and Theses
- 2011
[b1]Jiahua He:
PMap : unlocking the performance genes of HPC applications. University of California, San Diego, USA, 2011
Journal Articles
- 2021
- [j6]Jiahua He
, Sheng-You Huang:
EMNUSS: a deep learning framework for secondary structure annotation in cryo-EM maps. Briefings Bioinform. 22(6) (2021) - [j5]Jiahua He, Sheng-You Huang:
Full-length de novo protein structure determination from cryo-EM maps using deep learning. Bioinform. 37(20): 3480-3490 (2021) - 2020
- [j4]Zeyu Wen, Jiahua He, Sheng-You Huang:
Topology-independent and global protein structure alignment through an FFT-based algorithm. Bioinform. 36(2): 478-486 (2020) - 2019
- [j3]Zeyu Wen, Jiahua He, Huanyu Tao, Sheng-You Huang:
PepBDB: a comprehensive structural database of biological peptide-protein interactions. Bioinform. 35(1): 175-177 (2019) - [j2]Jiahua He, Huanyu Tao, Sheng-You Huang:
Protein-ensemble-RNA docking by efficient consideration of protein flexibility through homology models. Bioinform. 35(23): 4994-5002 (2019) - [j1]Jiahua He, Jun Wang, Huanyu Tao, Yi Xiao, Sheng-You Huang:
HNADOCK: a nucleic acid docking server for modeling RNA/DNA-RNA/DNA 3D complex structures. Nucleic Acids Res. 47(Webserver-Issue): W35-W42 (2019)
Conference and Workshop Papers
- 2011
- [c6]Jiahua He, Allan Snavely, Rob F. Van der Wijngaart, Michael A. Frumkin:
Automatic Recognition of Performance Idioms in Scientific Applications. IPDPS 2011: 118-127 - 2010
- [c5]Adrian M. Caulfield, Joel Coburn, Todor I. Mollov, Arup De, Ameen Akel, Jiahua He, Arun Jagatheesan, Rajesh K. Gupta, Allan Snavely, Steven Swanson:
Understanding the Impact of Emerging Non-Volatile Memories on High-Performance, IO-Intensive Computing. SC 2010: 1-11 - [c4]Jiahua He, Arun Jagatheesan, Sandeep K. S. Gupta, Jeffrey Bennett, Allan Snavely:
DASH: a Recipe for a Flash-based Data Intensive Supercomputer. SC 2010: 1-11 - [c3]Jiahua He, Jeffrey Bennett, Allan Snavely:
DASH-IO: an empirical study of flash-based IO for HPC. TG 2010: 10:1-10:8 - 2008
- [c2]Jiahua He, Allan Snavely, Rob F. Van der Wijngaart, Michael A. Frumkin:
Code coverage, performance approximation and automatic recognition of idioms in scientific applications. HPDC 2008: 223-224 - 2006
- [c1]Omid Khalili, Jiahua He, Catherine Olschanowsky, Allan Snavely, Henri Casanova:
Measuring the Performance and Reliability of Production Computational Grids. GRID 2006: 293-300
Coauthor Index
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