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ORCIDGilles Bernot
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2020 – today
- 2021
[c30]Laetitia Gibart, Gilles Bernot, Hélène Collavizza, Jean-Paul Comet:
TotemBioNet Enrichment Methodology: Application to the Qualitative Regulatory Network of the Cell Metabolism. BIOINFORMATICS 2021: 85-92- 2020
- [c29]Déborah Boyenval, Gilles Bernot, Hélène Collavizza, Jean-Paul Comet
:
What is a Cell Cycle Checkpoint? The TotemBioNet Answer. CMSB 2020: 362-372
2010 – 2019
- 2019
- [j17]Gilles Bernot, Jean-Paul Comet, Zohra Khalis, Adrien Richard, Olivier F. Roux:
A genetically modified Hoare logic. Theor. Comput. Sci. 765: 145-157 (2019) - [c28]Eman Ahmed, Reda A. El-Khoribi, Alexandre Muzy, Gilles Bernot, Gamal Darwish:
Modeling of Goal-oriented Human Motion Evolution using Hidden Markov Models. ICPRAM 2019: 605-612 - 2018
- [c27]Ophélie Guinaudeau, Gilles Bernot, Alexandre Muzy, Daniel Gaffé, Franck Grammont:
Computer-aided Formal Proofs about Dendritic Integration within a Neuron. BIOINFORMATICS 2018: 49-60 - [c26]Ophélie Guinaudeau, Gilles Bernot, Alexandre Muzy, Daniel Gaffé, Franck Grammont:
Formal Neuron Models: Delays Offer a Simplified Dendritic Integration for Free. BIOSTEC (Selected Papers) 2018: 167-191 - 2017
- [c25]Benjamin Miraglio, Gilles Bernot, Jean-Paul Comet, Christine Risso-de Faverney:
A Qualitative Framework Dedicated to Toxicology. BIOINFORMATICS 2017: 93-103 - [c24]Benjamin Miraglio, Gilles Bernot, Jean-Paul Comet, Christine Risso-de Faverney:
Detecting Toxicity Pathways with a Formal Framework Based on Equilibrium Changes. CMSB 2017: 196-213 - 2016
- [j16]Jonathan Behaegel, Jean-Paul Comet, Gilles Bernot, Emilien Cornillon, Franck Delaunay:
A hybrid model of cell cycle in mammals. J. Bioinform. Comput. Biol. 14(1): 1640001:1-1640001:17 (2016) - 2015
- [c23]Gilles Bernot, Jean-Paul Comet, Olivier F. Roux:
A Genetically Modified Hoare Logic that Identifies the Parameters of a Gene Network. CMSB 2015: 8-12 - [i1]Gilles Bernot, Jean-Paul Comet, Zohra Khalis, Adrien Richard, Olivier F. Roux:
A Genetically Modified Hoare Logic. CoRR abs/1506.05887 (2015) - 2012
- [c22]Jean-Paul Comet, Gilles Bernot, Aparna Das, Francine Diener, Camille Massot, Amélie Cessieux:
Simplified Models for the Mammalian Circadian Clock. CSBio 2012: 127-138 - 2011
- [j15]Vic Norris, Abdallah Zemirline, Patrick Amar, Jean Nicolas Audinot, Pascal Ballet, Eshel Ben-Jacob, Gilles Bernot, Guillaume Beslon, Armelle Cabin, Eric Fanchon, Jean-Louis Giavitto, Nicolas Glade, Patrick Greussay, Yohann Grondin, James A. Foster, Guillaume Hutzler, Jürgen Jost, François Képès, Olivier Michel, Franck Molina, Jacqueline Signorini, Pasquale Stano, Alain R. Thierry:
Computing with bacterial constituents, cells and populations: from bioputing to bactoputing. Theory Biosci. 130(3): 211-228 (2011) - 2010
- [c21]Jean-Paul Comet, Jonathan Fromentin, Gilles Bernot, Olivier F. Roux:
A Formal Model for Gene Regulatory Networks with Time Delays. CSBio 2010: 1-13
2000 – 2009
- 2009
- [j14]Gilles Bernot, Fariza Tahi:
Behaviour Preservation of a Biological Regulatory Network when Embedded into a Larger Network. Fundam. Informaticae 91(3-4): 463-485 (2009) - [j13]Sylvie Troncale, Jean-Paul Comet, Gilles Bernot:
Enzymatic competition: Modeling and verification with timed hybrid petri nets. Pattern Recognit. 42(4): 562-566 (2009) - [c20]Gilles Bernot, Jean-Paul Comet:
On the Use of Temporal Formal Logic to Model Gene Regulatory Networks. CIBB 2009: 112-138 - 2008
- [j12]Ana Carolina Fierro, Raphael Thuret, Kristof Engelen, Gilles Bernot, Kathleen Marchal, Nicolas Pollet:
Evaluation of time profile reconstruction from complex two-color microarray designs. BMC Bioinform. 9 (2008) - [j11]Patrick Amar, Guillaume Legent, Michel Thellier, Camille Ripoll, Gilles Bernot, Thomas Nyström, Milton H. Saier Jr., Vic Norris:
A stochastic automaton shows how enzyme assemblies may contribute to metabolic efficiency. BMC Syst. Biol. 2: 27 (2008) - [j10]Jamil Ahmad, Olivier F. Roux, Gilles Bernot, Jean-Paul Comet, Adrien Richard:
Analysing formal models of genetic regulatory networks with delays. Int. J. Bioinform. Res. Appl. 4(3): 240-262 (2008) - 2007
- [j9]Gilles Bernot, François Képès:
Chronique : Le programme d'épigénomique. Tech. Sci. Informatiques 26(1-2): 237-240 (2007) - 2006
- [j8]Didier Filopon, Annabelle Mérieau, Gilles Bernot, Jean-Paul Comet, Rozenne LeBerre, Benoit Guery, Benoit Polack, Janine Guespin-Michel:
Epigenetic acquisition of inducibility of type III cytotoxicity in P. aeruginosa. BMC Bioinform. 7: 272 (2006) - [c19]Jamil Ahmad, Adrien Richard, Gilles Bernot, Jean-Paul Comet, Olivier F. Roux:
Delays in Biological Regulatory Networks (BRN). International Conference on Computational Science (2) 2006: 887-894 - 2005
- [j7]Adrien Richard, Jean-Paul Comet, Gilles Bernot:
R. Thomas' Modeling of Biological Regulatory Networks: Introduction of Singular States in the Qualitative Dynamics. Fundam. Informaticae 65(4): 373-392 (2005) - 2004
- [c18]Adrien Richard, Jean-Paul Comet, Gilles Bernot:
Graph-Based Modeling of Biological Regulatory Networks: Introduction of Singular States. CMSB 2004: 58-72 - [c17]Christine Collet, Khalid Belhajjame, Gilles Bernot, Christophe Bobineau, Gennaro Bruno, Béatrice Finance, Fabrice Jouanot, Zoubida Kedad, David Laurent, Fariza Tahi, Genoveva Vargas-Solar, Tuyet-Trinh Vu, Xiaohui Xue:
Towards a Mediation System Framework for Transparent Access to Largely Distributed Sources. The MediaGrid Project. ICSNW 2004: 65-78 - 2003
- [c16]Vincent Bassano, Gilles Bernot:
Marked Regulatory Graphs: A Formal Framework to Simulate Biological Regulatory Networks with Simple Automata. IEEE International Workshop on Rapid System Prototyping 2003: 93-99 - [c15]Gilles Bernot, Franck Cassez, Jean-Paul Comet, Franck Delaplace, Céline Müller, Olivier F. Roux:
Semantics of Biological Regulatory Networks. BioConcur@CONCUR 2003: 3-14
1990 – 1999
- 1999
- [p1]Marie-Claude Gaudel, Gilles Bernot:
The Role of Formal Specifications. Algebraic Foundations of Systems Specification 1999: 1-12 - 1998
- [c14]Sophie Coudert, Gilles Bernot, Pascale Le Gall:
Hierarchical Heterogeneous Specifications. WADT 1998: 107-121 - 1997
- [c13]Gilles Bernot, Laurent Bouaziz, Pascale Le Gall:
A Theory of Probabilistic Functional Testing. ICSE 1997: 216-226 - 1996
- [c12]Gilles Bernot, Sophie Coudert, Pascale Le Gall:
Towards Heterogeneous Formal Specification. AMAST 1996: 458-472 - 1995
- [j6]Gilles Bernot, Michel Bidoit, Teodor Knapik:
Observational Specifications and the Indistinguishability Assumption. Theor. Comput. Sci. 139(1&2): 275-314 (1995) - 1994
- [j5]Gilles Bernot, Michel Bidoit, Teodor Knapik:
Behavioural Approaches to Algebraic Specifications: A Comparative Study. Acta Informatica 31(7): 651-671 (1994) - [j4]Gilles Bernot, Pascale Le Gall, Marc Aiguier:
Label Algebras and Exception Handling. Sci. Comput. Program. 23(2-3): 227-286 (1994) - 1993
- [c11]Gilles Bernot, Pascale Le Gall:
Exception Handling and Term Labelling. TAPSOFT 1993: 421-436 - 1992
- [c10]Gilles Bernot, Michel Bidoit, Teodor Knapik:
Towards an Adequate Notion of Observation. ESOP 1992: 39-55 - 1991
- [j3]Gilles Bernot, Marie-Claude Gaudel, Bruno Marre:
Software testing based on formal specifications: a theory and a tool. Softw. Eng. J. 6(6): 387-405 (1991) - [c9]Gilles Bernot, Michel Bidoit:
Proving the Correctness of Algebraically Specified Software: Modularity and Observability Issues. AMAST 1991: 216-239 - [c8]Gilles Bernot, Marie-Claude Gaudel, Bruno Marre:
A Formal Approach to Software Testing. AMAST 1991: 243-253 - [c7]Gilles Bernot, Pascale Le Gall:
Label Algebras: A Systematic Use of Terms. COMPASS/ADT 1991: 144-163 - [c6]Gilles Bernot:
Testing Against Formal Specifications: A Theoretical View. TAPSOFT, Vol.2 1991: 99-119
1980 – 1989
- 1989
- [j2]Gilles Bernot:
Correctness Proofs for Abstract Implementation. Inf. Comput. 80(2): 121-151 (1989) - 1987
- [c5]Gilles Bernot:
Good Functors... are Those Preserving Philosophy. Category Theory and Computer Science 1987: 182-195 - 1986
- [j1]Gilles Bernot, Michel Bidoit, Christine Choppy:
Abstract Data Types with Exception Handling: An Initial Approach Based on a Distinction Between Exceptions and Errors. Theor. Comput. Sci. 46(3): 13-45 (1986) - [c4]Gilles Bernot:
Abstract Implementation with Exception Handling. ADT 1986 - [c3]Gilles Bernot:
Correctness Proofs for Abstract Implementations. ADT 1986 - [c2]Gilles Bernot, Michel Bidoit, Christine Choppy:
Algebraic Semantics of Exception Handling. ESOP 1986: 173-186 - [c1]Gilles Bernot, Michel Bidoit, Christine Choppy:
Abstract Implementations and Correctness Proofs. STACS 1986: 236-251
Coauthor Index
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