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2020 – today
- 2023
[j9]Hanqing Zhao, Matthijs Leon Souilljee, Pavlos Pavlidis, Nikolaos Alachiotis:
Genome-wide scans for selective sweeps using convolutional neural networks. Bioinform. 39(Supplement-1): 194-203 (2023)- [c7]Hanqing Zhao
, Pavlos Pavlidis, Nikolaos Alachiotis:
SweepNet: A Lightweight CNN Architecture for the Classification of Adaptive Genomic Regions. PASC 2023: 12:1-12:10 - 2022
- [j8]Aristeidis Litos, Evangelia Intze, Pavlos Pavlidis, Ilias Lagkouvardos:
Cronos: A Machine Learning Pipeline for Description and Predictive Modeling of Microbial Communities Over Time. Frontiers Bioinform. 2 (2022) - 2021
- [j7]Michaela Areti Zervou, Effrosyni Doutsi, Pavlos Pavlidis, Panagiotis Tsakalides:
Structural classification of proteins based on the computationally efficient recurrence quantification analysis and horizontal visibility graphs. Bioinform. 37(13): 1796-1804 (2021) - 2020
- [c6]Charalampos Theodoris, Nikolaos Alachiotis, Tze Meng Low, Pavlos Pavlidis:
qLD: High-performance Computation of Linkage Disequilibrium on CPU and GPU. BIBE 2020: 65-72 - [c5]Michaela Areti Zervou, Effrosyni Doutsi, Pavlos Pavlidis, Panagiotis Tsakalides:
Efficient Dynamic Analysis of Low-similarity Proteins for Structural Class Prediction. EUSIPCO 2020: 1328-1332
2010 – 2019
- 2017
- [j6]Paschalia Kapli, Sarah Lutteropp, Jiajie Zhang, Kassian Kobert, Pavlos Pavlidis, Alexandros Stamatakis, Tomás Flouri:
Multi-rate Poisson tree processes for single-locus species delimitation under maximum likelihood and Markov chain Monte Carlo. Bioinform. 33(11): 1630-1638 (2017) - [j5]Duo Xu, Yousef Jaber, Pavlos Pavlidis, Omer Gokcumen:
VCFtoTree: a user-friendly tool to construct locus-specific alignments and phylogenies from thousands of anthropologically relevant genome sequences. BMC Bioinform. 18(1): 426:1-426:8 (2017) - [c4]Dimitrios Bozikas, Nikolaos Alachiotis, Pavlos Pavlidis, Euripides Sotiriades, Apostolos Dollas:
Deploying FPGAs to future-proof genome-wide analyses based on linkage disequilibrium. FPL 2017: 1-8 - 2014
- [j4]Marc Pybus, Giovanni Marco Dall'Olio, Pierre Luisi, Manu Uzkudun, Angel Carreño-Torres, Pavlos Pavlidis, Hafid Laayouni, Jaume Bertranpetit, Johannes Engelken:
1000 Genomes Selection Browser 1.0: a genome browser dedicated to signatures of natural selection in modern humans. Nucleic Acids Res. 42(Database-Issue): 903-909 (2014) - 2013
- [j3]Jiajie Zhang, Paschalia Kapli, Pavlos Pavlidis, Alexandros Stamatakis:
A general species delimitation method with applications to phylogenetic placements. Bioinform. 29(22): 2869-2876 (2013) - [c3]Solon P. Pissis, Alexandros Stamatakis, Pavlos Pavlidis:
MoTeX: A word-based HPC tool for MoTif eXtraction. BCB 2013: 13 - [c2]Solon P. Pissis, Christian Goll, Pavlos Pavlidis, Alexandros Stamatakis:
Accelerating String Matching on MIC Architecture for Motif Extraction. PPAM (2) 2013: 258-267 - 2012
- [j2]Nikolaos Alachiotis, Alexandros Stamatakis, Pavlos Pavlidis:
OmegaPlus: a scalable tool for rapid detection of selective sweeps in whole-genome datasets. Bioinform. 28(17): 2274-2275 (2012) - [c1]Nikolaos Alachiotis, Pavlos Pavlidis, Alexandros Stamatakis:
Exploiting Multi-grain Parallelism for Efficient Selective Sweep Detection. ICA3PP (1) 2012: 56-68
2000 – 2009
- 2006
- [j1]Pavlos Pavlidis, Panayiota Poirazi:
Individualized markers optimize class prediction of microarray data. BMC Bioinform. 7: 345 (2006)
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