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2020 – today
- 2022
[i1]Zahra Shamsi, Drew Bryant, Jacob Wilson, Xiaoyu Qu, Avinava Dubey, Konik Kothari, Mostafa Dehghani, Mariya Chavarha, Valerii Likhosherstov, Brian Williams, Michael Frumkin, Fred Appelbaum, Krzysztof Choromanski, Ali Bashir, Min Fang:
Automated Deep Aberration Detection from Chromosome Karyotype Images. CoRR abs/2211.14312 (2022)- 2020
- [j11]Oscar L. Rodriguez
, Anna M. Ritz, Andrew J. Sharp, Ali Bashir:
MsPAC: a tool for haplotype-phased structural variant detection. Bioinform. 36(3): 922-924 (2020)
2010 – 2019
- 2016
- [j10]Volkan Sevim, Ali Bashir, Chen-Shan Chin, Karen H. Miga:
Alpha-CENTAURI: assessing novel centromeric repeat sequence variation with long read sequencing. Bioinform. 32(13): 1921-1924 (2016) - 2014
- [j9]Anna M. Ritz, Ali Bashir, Suzanne S. Sindi, David Hsu, Iman Hajirasouliha, Benjamin J. Raphael:
Characterization of structural variants with single molecule and hybrid sequencing approaches. Bioinform. 30(24): 3458-3466 (2014) - [j8]Ajay Ummat, Ali Bashir:
Resolving complex tandem repeats with long reads. Bioinform. 30(24): 3491-3498 (2014) - [j7]Noam D. Beckmann, Sashank Karri, Gang Fang, Ali Bashir:
Detecting epigenetic motifs in low coverage and metagenomics settings. BMC Bioinform. 15(S-9): S16 (2014) - 2011
- [j6]Christine Lo, Ali Bashir, Vikas Bansal, Vineet Bafna:
Strobe sequence design for haplotype assembly. BMC Bioinform. 12(S-1): S24 (2011) - [c2]Benjamin J. Raphael, Suzanne S. Sindi, Anna M. Ritz, Ali Bashir:
Workshop: Characterization of structural variants with next generation DNA sequencing. ICCABS 2011: 275 - 2010
- [j5]Anna M. Ritz, Ali Bashir, Benjamin J. Raphael:
Structural variation analysis with strobe reads. Bioinform. 26(10): 1291-1298 (2010) - [j4]Ali Bashir, Qing Lu, Dennis Carson, Benjamin J. Raphael, Yu-Tsueng Liu, Vineet Bafna:
Optimizing PCR Assays for DNA-Based Cancer Diagnostics. J. Comput. Biol. 17(3): 369-381 (2010)
2000 – 2009
- 2009
- [b1]Ali Bashir:
Computational methods for analyzing and detecting genomic structural variation : applications to cancer. University of California, San Diego, USA, 2009 - [j3]Suzanne S. Sindi, Elena Helman, Ali Bashir, Benjamin J. Raphael:
A geometric approach for classification and comparison of structural variants. Bioinform. 25(12) (2009) - [c1]Ali Bashir, Qing Lu, Dennis Carson, Benjamin J. Raphael, Yu-Tsueng Liu, Vineet Bafna:
Optimizing PCR Assays for DNA Based Cancer Diagnostics. RECOMB 2009: 220-235 - 2008
- [j2]Ali Bashir, Stanislav Volik, Colin C. Collins, Vineet Bafna, Benjamin J. Raphael:
Evaluation of Paired-End Sequencing Strategies for Detection of Genome Rearrangements in Cancer. PLoS Comput. Biol. 4(4) (2008) - 2007
- [j1]Ali Bashir, Yu-Tsueng Liu, Benjamin J. Raphael, Dennis Carson, Vineet Bafna:
Optimization of primer design for the detection of variable genomic lesions in cancer. Bioinform. 23(21): 2807-2815 (2007)
Coauthor Index
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