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Journal Articles
- 2023
[j9]Jover Lee, James Hadfield, Allison Black, Thomas R. Sibley, Richard A. Neher
, Trevor Bedford, John Huddleston:
Joint visualization of seasonal influenza serology and phylogeny to inform vaccine composition. Frontiers Bioinform. 3 (2023)- 2022
- [j8]Pierre Barrat-Charlaix, Timothy G. Vaughan, Richard A. Neher:
TreeKnit: Inferring ancestral reassortment graphs of influenza viruses. PLoS Comput. Biol. 18(8) (2022) - 2021
- [j7]John Huddleston, James Hadfield, Thomas R. Sibley, Jover Lee, Kairsten Fay, Misja Ilcisin, Elias Harkins, Trevor Bedford, Richard A. Neher, Emma B. Hodcroft:
Augur: a bioinformatics toolkit for phylogenetic analyses of human pathogens. J. Open Source Softw. 6(57): 2906 (2021) - [j6]Ivan Aksamentov, Cornelius Roemer, Emma B. Hodcroft, Richard A. Neher:
Nextclade: clade assignment, mutation calling and quality control for viral genomes. J. Open Source Softw. 6(67): 3773 (2021) - 2018
- [j5]James Hadfield, Colin Megill, Sidney M. Bell, John Huddleston, Barney Potter, Charlton Callender, Pavel Sagulenko, Trevor Bedford, Richard A. Neher:
Nextstrain: real-time tracking of pathogen evolution. Bioinform. 34(23): 4121-4123 (2018) - 2017
- [j4]Vadim Puller, Richard A. Neher, Jan Albert:
Estimating time of HIV-1 infection from next-generation sequence diversity. PLoS Comput. Biol. 13(10) (2017) - 2015
- [j3]Richard A. Neher, Trevor Bedford:
nextflu: real-time tracking of seasonal influenza virus evolution in humans. Bioinform. 31(21): 3546-3548 (2015) - 2012
- [j2]Fabio Zanini, Richard A. Neher:
FFPopSim: an efficient forward simulation package for the evolution of large populations. Bioinform. 28(24): 3332-3333 (2012) - 2010
- [j1]Richard A. Neher, Thomas Leitner:
Recombination Rate and Selection Strength in HIV Intra-patient Evolution. PLoS Comput. Biol. 6(1) (2010)
Conference and Workshop Papers
- 2009
- [c1]Fabian J. Theis, Richard A. Neher, Andre Zeug:
Blind Decomposition of Spectral Imaging Microscopy: A Study on Artificial and Real Test Data. ICA 2009: 548-556
Coauthor Index
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