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Journal Articles
- 2022
[j8]Colm Seale
, Yasin Tepeli, Joana P. Gonçalves:
Overcoming selection bias in synthetic lethality prediction. Bioinform. 38(18): 4360-4368 (2022)- 2014
- [j7]Kai Sun, Joana P. Gonçalves, Chris Larminie, Natasa Przulj:
Predicting disease associations via biological network analysis. BMC Bioinform. 15: 304 (2014) - [j6]Miguel Cacho Teixeira, Pedro Tiago Monteiro, Joana Fernandes Guerreiro, Joana Pinho Gonçalves, Nuno Pereira Mira, Sandra Costa dos Santos, Tânia Rodrigues Cabrito, Margarida Palma, Catarina Costa, Alexandre Paulo Francisco, Sara Cordeiro Madeira, Arlindo Limede Oliveira, Ana Teresa Freitas, Isabel Sá-Correia:
The YEASTRACT database: an upgraded information system for the analysis of gene and genomic transcription regulation in Saccharomyces cerevisiae. Nucleic Acids Res. 42(Database-Issue): 161-166 (2014) - [j5]Joana P. Gonçalves, Sara C. Madeira:
LateBiclustering: Efficient Heuristic Algorithm for Time-Lagged Bicluster Identification. IEEE ACM Trans. Comput. Biol. Bioinform. 11(5): 801-813 (2014) - 2012
- [j4]Joana P. Gonçalves, Yves Moreau, Sara C. Madeira:
AliBiMotif: Integrating alignment and biclustering to unravel transcription factor binding sites in DNA sequences. Int. J. Data Min. Bioinform. 6(2): 196-215 (2012) - 2011
- [j3]Joana P. Gonçalves, Alexandre P. Francisco, Nuno P. Mira, Miguel C. Teixeira, Isabel Sá-Correia, Arlindo L. Oliveira, Sara C. Madeira:
TFRank: network-based prioritization of regulatory associations underlying transcriptional responses. Bioinform. 27(22): 3149-3157 (2011) - [j2]Daniela Nitsch, Léon-Charles Tranchevent, Joana P. Gonçalves, Josef Korbinian Vogt, Sara C. Madeira, Yves Moreau:
PINTA: a web server for network-based gene prioritization from expression data. Nucleic Acids Res. 39(Web-Server-Issue): 334-338 (2011) - 2010
- [j1]Daniela Nitsch, Joana P. Gonçalves, Fabian Ojeda, Bart De Moor, Yves Moreau:
Candidate gene prioritization by network analysis of differential expression using machine learning approaches. BMC Bioinform. 11: 460 (2010)
Conference and Workshop Papers
- 2013
- [c3]Joana P. Gonçalves, Sara C. Madeira:
Heuristic approaches for time-lagged biclustering. BIOKDD 2013: 1-9 - 2010
- [c2]Joana P. Gonçalves, Sara C. Madeira:
e-BiMotif: Combining Sequence Alignment and Biclustering to Unravel Structured Motifs. IWPACBB 2010: 181-191 - [c1]Joana P. Gonçalves, Sara C. Madeira, Yves Moreau:
Network-Based Disease Candidate Gene Prioritization: Towards Global Diffusion in Heterogeneous Association Networks. NyNaK 2010
Informal and Other Publications
- 2024
- [i1]Yasin Tepeli, Joana P. Gonçalves:
DCAST: Diverse Class-Aware Self-Training Mitigates Selection Bias for Fairer Learning. CoRR abs/2409.20126 (2024)
Coauthor Index
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