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ORCIDTakatsugu Hirokawa
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Journal Articles
- 2024
[j14]Genki Kudo
, Takumi Hirao, Ryunosuke Yoshino, Yasuteru Shigeta, Takatsugu Hirokawa:
Site Identification and Next Choice Protocol for Hit-to-Lead Optimization. J. Chem. Inf. Model. 64(11): 4475-4484 (2024)- 2023
- [j13]Genki Kudo, Takumi Hirao, Ryunosuke Yoshino, Yasuteru Shigeta, Takatsugu Hirokawa:
Pocket to concavity: a tool for the refinement of protein-ligand binding site shape from alpha spheres. Bioinform. 39(4) (2023) - [j12]Genki Kudo, Keisuke Yanagisawa, Ryunosuke Yoshino, Takatsugu Hirokawa:
AAp-MSMD: Amino Acid Preference Mapping on Protein-Protein Interaction Surfaces Using Mixed-Solvent Molecular Dynamics. J. Chem. Inf. Model. 63(24): 7768-7777 (2023) - 2021
- [j11]Chie Motono, Shunsuke Yanagida, Miwa Sato, Takatsugu Hirokawa:
MDContactCom: a tool to identify differences of protein molecular dynamics from two MD simulation trajectories in terms of interresidue contacts. Bioinform. 38(1): 273-274 (2021) - 2016
- [j10]Mitsugu Araki, Narutoshi Kamiya, Miwa Sato, Masahiko Nakatsui, Takatsugu Hirokawa, Yasushi Okuno:
The Effect of Conformational Flexibility on Binding Free Energy Estimation between Kinases and Their Inhibitors. J. Chem. Inf. Model. 56(12): 2445-2456 (2016) - 2015
- [j9]Kana Shimizu, Koji Nuida, Hiromi Arai, Shigeo Mitsunari, Nuttapong Attrapadung, Michiaki Hamada, Koji Tsuda, Takatsugu Hirokawa, Jun Sakuma, Goichiro Hanaoka, Kiyoshi Asai:
Privacy-preserving search for chemical compound databases. BMC Bioinform. 16(S18): S6 (2015) - 2014
- [j8]Satoshi Yamasaki, Takatsugu Hirokawa, Kiyoshi Asai, Kazuhiko Fukui:
Tertiary Structure Prediction of RNA-RNA Complexes Using a Secondary Structure and Fragment-Based Method. J. Chem. Inf. Model. 54(2): 672-682 (2014) - [j7]Miwa Sato, Takatsugu Hirokawa:
Extended Template-Based Modeling and Evaluation Method Using Consensus of Binding Mode of GPCRs for Virtual Screening. J. Chem. Inf. Model. 54(11): 3153-3161 (2014) - 2011
- [j6]Shigeru Saito, Takatsugu Hirokawa, Katsuhisa Horimoto:
Discovery of Chemical Compound Groups with Common Structures by a Network Analysis Approach (Affinity Prediction Method). J. Chem. Inf. Model. 51(1): 61-68 (2011) - [j5]Seiji Hitaoka, Hiroshi Matoba, Masataka Harada, Tatsusada Yoshida, Daisuke Tsuji, Takatsugu Hirokawa, Kohji Itoh, Hiroshi Chuman:
Correlation Analyses on Binding Affinity of Sialic Acid Analogues and Anti-Influenza Drugs with Human Neuraminidase Using ab Initio MO Calculations on Their Complex Structures - LERE-QSAR Analysis (IV). J. Chem. Inf. Model. 51(10): 2706-2716 (2011) - 2010
- [j4]Nobuyuki Uchikoga, Takatsugu Hirokawa:
Analysis of protein-protein docking decoys using interaction fingerprints: application to the reconstruction of CaM-ligand complexes. BMC Bioinform. 11: 236 (2010) - 2005
- [j3]Yukimitsu Yabuki, Takahiko Muramatsu, Takatsugu Hirokawa, Hidehito Mukai, Makiko Suwa:
GRIFFIN: a system for predicting GPCR-G-protein coupling selectivity using a support vector machine and a hidden Markov model. Nucleic Acids Res. 33(Web-Server-Issue): 148-153 (2005) - 2002
- [j2]Shigeki Mitaku, Takatsugu Hirokawa, Toshiyuki Tsuji:
Amphiphilicity index of polar amino acids as an aid in the characterization of amino acid preference at membrane-water interfaces. Bioinform. 18(4): 608-616 (2002) - 1998
- [j1]Takatsugu Hirokawa, Seah Boon-Chieng, Shigeki Mitaku:
SOSUI: classification and secondary structure prediction system for membrane proteins. Bioinform. 14(4): 378-379 (1998)
Coauthor Index
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