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ORCIDSatoru Kuhara
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2010 – 2019
- 2014
[j24]Toshihide Ono, Satoru Kuhara:
A novel method for gathering and prioritizing disease candidate genes based on construction of a set of disease-related MeSH(R) terms. BMC Bioinform. 15: 179 (2014)- 2013
- [j23]Yuta Taniguchi, Yasuhiro Yamada, Osamu Maruyama, Satoru Kuhara, Daisuke Ikeda:
The Purity Measure for genomic Regions leads to Horizontally Transferred genes. J. Bioinform. Comput. Biol. 11(6) (2013) - [c20]Daisuke Ikeda, Osamu Maruyama, Satoru Kuhara:
Infrequent, Unexpected, and Contrast Pattern Discovery from Bacterial Genomes by Genome-wide Comparative Analysis. BIOINFORMATICS 2013: 308-311 - 2011
- [j22]Haretsugu Hishigaki, Satoru Kuhara:
hERGAPDbase: a database documenting hERG channel inhibitory potentials and APD-prolongation activities of chemical compounds. Database J. Biol. Databases Curation 2011 (2011) - 2010
- [j21]Hirofumi Suzaki, Satoru Kuhara:
An Extension Approach for Neural Networks by Introducing a Nearest Neighbor Algorithm in Relative Coordinates. J. Adv. Comput. Intell. Intell. Informatics 14(4): 325-343 (2010)
2000 – 2009
- 2009
- [c19]Yoshinori Tamada, Hiromitsu Araki, Seiya Imoto, Masao Nagasaki, Atsushi Doi, Yukiko Nakanishi, Yuki Tomiyasu, Kaori Yasuda, Ben Dunmore, Deborah Sanders, Sally Humphreys, Cristin G. Print, Stephen D. Charnock-Jones, Kousuke Tashiro, Satoru Kuhara, Satoru Miyano:
Unraveling Dynamic Activities of Autocrine Pathways that Control Drug-Response Transcriptome Networks. Pacific Symposium on Biocomputing 2009: 251-263 - 2008
- [c18]Osamu Maruyama, Hideki Hirakawa, Takao Iwayanagi, Yoshiko Ishida, Shizu Takeda, Jun Otomo, Satoru Kuhara:
Evaluating Protein Sequence Signatures Inferred from Protein-Protein Interaction Data by Gene Ontology Annotations. BIBM 2008: 417-420 - 2006
- [j20]Satoshi Niijima, Satoru Kuhara:
Recursive gene selection based on maximum margin criterion: a comparison with SVM-RFE. BMC Bioinform. 7: 543 (2006) - [j19]Satoshi Niijima, Satoru Kuhara:
Gene subset selection in kernel-induced feature space. Pattern Recognit. Lett. 27(16): 1884-1892 (2006) - [c17]Seiya Imoto, Yoshinori Tamada, Hiromitsu Araki, Kaori Yasuda, Cristin G. Print, Stephen D. Charnock-Jones, Deborah Sanders, Christopher J. Savoie, Kousuke Tashiro, Satoru Kuhara, Satoru Miyano:
Computational Strategy for Discovering Druggable Gene Networks from Genome-Wide RNA Expression Profiles. Pacific Symposium on Biocomputing 2006: 559-571 - 2005
- [j18]Osamu Maruyama, Akiko Matsuda, Satoru Kuhara:
Reconstructing phylogenetic trees of prokaryote genomes by randomly sampling oligopeptides. Int. J. Bioinform. Res. Appl. 1(4): 429-446 (2005) - [j17]Satoshi Niijima, Satoru Kuhara:
Multiclass Molecular Cancer Classification by Kernel Subspace Methods with Effective Kernel Parameter Selection. J. Bioinform. Comput. Biol. 3(5): 1071-1088 (2005) - [c16]Osamu Maruyama, Akiko Matsuda, Satoru Kuhara:
Reconstructing Phylogenetic Trees of Prokaryote Genomes by Randomly Sampling Oligopeptides. International Conference on Computational Science (2) 2005: 911-918 - 2004
- [j16]Seiya Imoto, Tomoyuki Higuchi, Takao Goto, Kousuke Tashiro, Satoru Kuhara, Satoru Miyano
:
Combining Microarrays and Biological Knowledge for Estimating Gene Networks via Bayesian Networks. J. Bioinform. Comput. Biol. 2(1): 77-98 (2004) - [j15]Yukihiro Maki, Yoriko Takahashi, Yuji Arikawa, Shoji Watanabe, Ken Aoshima, Yukihiro Eguchi, Takanori Ueda, Sachiyo Aburatani, Satoru Kuhara, Masahiro Okamoto:
An Integrated Comprehensive Workbench for Inferring Genetic Networks: voyagene. J. Bioinform. Comput. Biol. 2(3): 533-550 (2004) - 2003
- [j14]Seiya Imoto, SunYong Kim, Takao Goto, Sachiyo Aburatani, Kousuke Tashiro, Satoru Kuhara, Satoru Miyano:
Bayesian Network and Nonparametric Heteroscedastic Regression for Nonlinear Modeling of Genetic Network. J. Bioinform. Comput. Biol. 1(2): 231-252 (2003) - [j13]Seiya Imoto, Christopher J. Savoie, Sachiyo Aburatani, SunYong Kim, Kousuke Tashiro, Satoru Kuhara, Satoru Miyano:
Use of Gene Networks for Identifying and Validating Drug Targets. J. Bioinform. Comput. Biol. 1(3): 459-474 (2003) - [j12]Sachiyo Aburatani, Satoru Kuhara, Hiroyuki Toh, Katsuhisa Horimoto:
Deduction of a gene regulatory relationship framework from gene expression data by the application of graphical Gaussian modeling. Signal Process. 83(4): 777-788 (2003) - [j11]Tatsuya Akutsu, Satoru Miyano, Satoru Kuhara:
A simple greedy algorithm for finding functional relations: efficient implementation and average case analysis. Theor. Comput. Sci. 292(2): 481-495 (2003) - [j10]Tatsuya Akutsu, Satoru Kuhara, Osamu Maruyama, Satoru Miyano:
Identification of genetic networks by strategic gene disruptions and gene overexpressions under a boolean model. Theor. Comput. Sci. 298(1): 235-251 (2003) - [c15]Seiya Imoto, Tomoyuki Higuchi, Takao Goto, Kousuke Tashiro, Satoru Kuhara, Satoru Miyano:
Combining Microarrays and Biological Knowledge for Estimating Gene Networks via Bayesian Networks. CSB 2003: 104-113 - [c14]Yoshinori Tamada, SunYong Kim, Hideo Bannai, Seiya Imoto, Kousuke Tashiro, Satoru Kuhara, Satoru Miyano:
Estimating gene networks from gene expression data by combining Bayesian network model with promoter element detection. ECCB 2003: 227-236 - 2002
- [j9]Osamu Maruyama, Hideo Bannai, Yoshinori Tamada, Satoru Kuhara, Satoru Miyano:
Fast algorithm for extracting multiple unordered short motifs using bit operations. Inf. Sci. 146(1-4): 115-126 (2002) - [c13]Seiya Imoto, SunYong Kim, Takao Goto, Sachiyo Aburatani, Kousuke Tashiro, Satoru Kuhara, Satoru Miyano:
Bayesian Network and Nonparametric Heteroscedastic Regression for Nonlinear Modeling of Genetic Network. CSB 2002: 219-227 - [c12]Osamu Maruyama, Satoru Kuhara, Hideo Bannai, Satoru Miyano, Yoshinori Tamada:
Fast Algorithm for Extracting Multiple Unordered Short Motifs Using Bit Operations. JCIS 2002: 1180-1185 - 2001
- [c11]Osamu Maruyama, Takayoshi Shoudai, Emiko Furuichi, Satoru Kuhara, Satoru Miyano:
Learning Conformation Rules. Discovery Science 2001: 243-257 - 2000
- [j8]Tatsuya Akutsu, Satoru Miyano, Satoru Kuhara:
Inferring qualitative relations in genetic networks and metabolic pathways. Bioinform. 16(8): 727-734 (2000) - [j7]Tatsuya Akutsu, Satoru Miyano, Satoru Kuhara:
Algorithms for Identifying Boolean Networks and Related Biological Networks Based on Matrix Multiplication and Fingerprint Function. J. Comput. Biol. 7(3-4): 331-343 (2000) - [c10]Tatsuya Akutsu, Satoru Miyano, Satoru Kuhara:
A Simple Greedy Algorithm for Finding Functional Relations: Efficient Implementation and Average Case Anaylsis. Discovery Science 2000: 86-98 - [c9]Tatsuya Akutsu, Satoru Miyano, Satoru Kuhara:
Algorithms for identifying Boolean networks and related biological networks based on matrix multiplication and fingerprint function. RECOMB 2000: 8-14
1990 – 1999
- 1999
- [j6]Hideki Hirakawa, S. Muta, Satoru Kuhara:
The hydrophobic cores of proteins predicted by wavelet analysis. Bioinform. 15(2): 141-148 (1999) - [c8]Tatsuya Akutsu, Satoru Miyano, Satoru Kuhara:
Identification of Genetic Networks from a Small Number of Gene Expression Patterns Under the Boolean Network Model. Pacific Symposium on Biocomputing 1999: 17-28 - [c7]Christopher J. Savoie, Nobuhiro Kamikawaji, Takehiko Sasazuki, Satoru Kuhara:
Use of Bonsai Decision Trees for the Identification of Potential MHC Class I Peptide Epitope Motifs. Pacific Symposium on Biocomputing 1999: 182-189 - 1998
- [c6]Tatsuya Akutsu, Satoru Kuhara, Osamu Maruyama, Satoru Miyano:
Identification of Gene Regulatory Networks by Strategic Gene Disruptions and Gene Overexpressions. SODA 1998: 695-702 - 1997
- [j5]Y. Tsukamoto, Kyoko Takiguchi, Kenji Satou, Emiko Furuichi, Toshihisa Takagi, Satoru Kuhara:
Application of a deductive database system to search for topological and similar three-dimensional structures in protein. Comput. Appl. Biosci. 13(2): 183-190 (1997) - [c5]Kenji Satou, Toshihide Ono, Yoshihisa Yamamura, Emiko Furuichi, Satoru Kuhara, Toshihisa Takagi:
Extraction of Substructures of Proteins Essential to their Biological Functions by a Data Mining Technique. ISMB 1997: 254-257 - 1995
- [j4]Akio Nishikawa, Kenji Satou, Emiko Furuichi, Satoru Kuhara, Kazuo Ushijima:
Data Classification Component in a Deductive Database System and Its Application to Protein Structural Analysis. IEICE Trans. Inf. Syst. 78-D(11): 1377-1387 (1995) - [c4]Takayoshi Shoudai, Michael Lappe, Satoru Miyano, Ayumi Shinohara, Takeo Okazaki, Setsuo Arikawa, Tomoyuki Uchida, Shinichi Shimozono, Takeshi Shinohara, Satoru Kuhara:
BONSAI Garden: Parallel Knowledge Discovery System for Amino Acid Sequences. ISMB 1995: 359-366 - 1994
- [c3]Takahiko Suzuki, Toshihisa Takagi, Satoru Kuhara, Minoru Kanehisa:
Development of an integrated Database for Genome Mapping and Nucleotide Sequences. HICSS (5) 1994: 68-76 - [c2]Kenji Satou, Emiko Furuichi, Kyoko Takiguchi, Satoru Kuhara, Toshihisa Takagi:
Application of a Deductive Database System PACADE toward Discovery of Clusters of Similar Structures in Proteins. HICSS (5) 1994: 160-170 - 1993
- [j3]Kenji Satou, Emiko Furuichi, Kyoko Takiguchi, Toshihisa Takagi, Satoru Kuhara:
A deductive database system PACADE for analyzing 3-D and secondary structures of protein. Comput. Appl. Biosci. 9(3): 259-265 (1993) - [j2]Setsuo Arikawa, Satoru Miyano, Ayumi Shinohara, Satoru Kuhara, Yasuhito Mukouchi, Takeshi Shinohara:
A Machine Discovery from Amino Acid Sequences by Decision Trees over Regular Patterns. New Gener. Comput. 11(3): 361-375 (1993) - 1992
- [c1]Setsuo Arikawa, Satoru Kuhara, Satoru Miyano, Yasuhito Mukouchi, Ayumi Shinohara, Takeshi Shinohara:
A Machine Discovery from Amino Acid Sequences by Decision Trees over Regular Patterns. FGCS 1992: 618-625
1980 – 1989
- 1984
- [j1]Satoru Kuhara, Fumihiro Matsuo, Syoichi Futamura, Atsushi Fujita, Takeshi Shinohara, Toshihisa Takagi, Yoshiyuki Sakaki:
GENAS: a database system for nucleic acid sequence analysis. Nucleic Acids Res. 12(1): 89-99 (1984)
Coauthor Index
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