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Journal Articles
- 2023
[j37]Arsen O. Batagov
, Rinkoo Dalan, Andrew Wu, Wenbin Lai, Colin S. Tan, Frank Eisenhaber:
Generalized metabolic flux analysis framework provides mechanism-based predictions of ophthalmic complications in type 2 diabetes patients. Health Inf. Sci. Syst. 11(1): 18 (2023)- 2019
- [j36]Sebastian Maurer-Stroh, Nora L. Krutz, Petra S. Kern, Vithiagaran Gunalan, Minh N. Nguyen, Vachiranee Limviphuvadh, Frank Eisenhaber, G. Frank Gerberick:
AllerCatPro - prediction of protein allergenicity potential from the protein sequence. Bioinform. 35(17): 3020-3027 (2019) - [j35]Zhang Zhang, Jun Yu, Frank Eisenhaber, Xin Gao, Takashi Gojobori:
In Memory of Vladimir B. Bajic (1952-2019). Genom. Proteom. Bioinform. 17(5): 473-474 (2019) - [j34]Weihong Tay, Erwin Tantoso, Frank Eisenhaber, Wing-Cheong Wong:
Translational Informatics Management System (TIMS): Towards OMICS based clinical data management for long term curation of clinical studies. J. Open Source Softw. 4(40): 1533 (2019) - 2015
- [j33]Westley Arthur Sherman, Durga Kuchibhatla, Vachiranee Limviphuvadh, Sebastian Maurer-Stroh, Birgit Eisenhaber, Frank Eisenhaber:
HPMV: Human protein mutation viewer - relating sequence mutations to protein sequence architecture and function changes. J. Bioinform. Comput. Biol. 13(5): 1550028:1-1550028:18 (2015) - 2014
- [j32]Wing-Cheong Wong, Sebastian Maurer-Stroh, Birgit Eisenhaber, Frank Eisenhaber:
On the necessity of dissecting sequence similarity scores into segment-specific contributions for inferring protein homology, function prediction and annotation. BMC Bioinform. 15: 166 (2014) - [j31]Frank Eisenhaber:
Unix interfaces, Kleisli, bucandin structure, etc. - The heroic beginning of bioinformatics in Singapore. J. Bioinform. Comput. Biol. 12(3) (2014) - [j30]Frank Eisenhaber, Westley Arthur Sherman:
10 years for the Journal of Bioinformatics and Computational Biology (2003-2013) - A retrospective. J. Bioinform. Comput. Biol. 12(3) (2014) - [j29]Frank Eisenhaber, Wing-Kin Sung, Limsoon Wong:
Guest Editorial for the International Conference on Genome Informatics (GIW 2013). IEEE ACM Trans. Comput. Biol. Bioinform. 11(1): 5-6 (2014) - 2013
- [j28]Frank Eisenhaber, Wing-Kin Sung, Limsoon Wong:
International Conference on Genome Informatics (GIW 2013) in Singapore: introduction to the systems biology contributions. BMC Syst. Biol. 7(S-6): I1 (2013) - [j27]Vladimir A. Kuznetsov, Hwee Kuan Lee, Sebastian Maurer-Stroh, Maria Judit Molnár, Sándor Pongor, Birgit Eisenhaber, Frank Eisenhaber:
How bioinformatics influences health informatics: usage of biomolecular sequences, expression profiles and automated microscopic image analyses for clinical needs and public health. Health Inf. Sci. Syst. 1(1): 2 (2013) - [j26]Sebastian Maurer-Stroh, He Gao, Hao Han, Lies Baeten, Joost Schymkowitz, Frederic Rousseau, Louxin Zhang, Frank Eisenhaber:
Motif Discovery with Data Mining in 3D protein Structure Databases: Discovery, Validation and Prediction of the U-Shape zinc binding ("Huf-zinc") Motif. J. Bioinform. Comput. Biol. 11(1) (2013) - [j25]Frank Eisenhaber, Wing-Kin Sung, Limsoon Wong:
The 24th International Conference on genome Informatics, Giw2013, in Singapore. J. Bioinform. Comput. Biol. 11(6) (2013) - [j24]Jianmin Ma, Frank Eisenhaber, Sebastian Maurer-Stroh:
Automatic phylogenetic Classification of bacterial beta-Lactamase Sequences including Structural and Antibiotic substrate Preference Information. J. Bioinform. Comput. Biol. 11(6) (2013) - [j23]Sebastian Maurer-Stroh, Vithiagaran Gunalan, Wing-Cheong Wong, Frank Eisenhaber:
A Simple Shortcut to Unsupervised Alignment-Free phylogenetic genome Groupings, even from Unassembled sequencing reads. J. Bioinform. Comput. Biol. 11(6) (2013) - [j22]Alexander Goncearenco, Simon Mitternacht, Taipang Yong, Birgit Eisenhaber, Frank Eisenhaber, Igor N. Berezovsky:
SPACER: server for predicting allosteric communication and effects of regulation. Nucleic Acids Res. 41(Webserver-Issue): 266-272 (2013) - 2012
- [j21]Joshua Tan, Durga Kuchibhatla, Fernanda L. Sirota, Westley A. Sherman, Tobias Gattermayer, Chia Yee Kwoh, Frank Eisenhaber, Georg Schneider, Sebastian Maurer-Stroh:
Tachyon search speeds up retrieval of similar sequences by several orders of magnitude. Bioinform. 28(12): 1645-1646 (2012) - [j20]Frank Eisenhaber:
A Decade after the First Full Human genome sequencing: when will We Understand our Own genome? J. Bioinform. Comput. Biol. 10(5) (2012) - [j19]Fernanda L. Sirota, Arsen O. Batagov, Georg Schneider, Birgit Eisenhaber, Frank Eisenhaber, Sebastian Maurer-Stroh:
Beware of Moving targets: Reference proteome Content Fluctuates substantially over the Years. J. Bioinform. Comput. Biol. 10(6) (2012) - [j18]Wing-Cheong Wong, Sebastian Maurer-Stroh, Georg Schneider, Frank Eisenhaber:
Transmembrane helix: simple or complex. Nucleic Acids Res. 40(Web-Server-Issue): 370-375 (2012) - 2011
- [j17]Wing-Cheong Wong, Sebastian Maurer-Stroh, Frank Eisenhaber:
The Janus-Faced E-Values of Hmmer2: Extreme Value Distribution or logistic Function? J. Bioinform. Comput. Biol. 9(1): 179-206 (2011) - 2010
- [j16]Vachiranee Limviphuvadh, Ling Ling Chua, Frank Eisenhaber, Sharmila Adhikari, Sebastian Maurer-Stroh:
Is Lgi2 the Candidate Gene for Partial Epilepsy with Pericentral Spikes? J. Bioinform. Comput. Biol. 8(1): 117-127 (2010) - [j15]Wing-Cheong Wong, Sebastian Maurer-Stroh, Frank Eisenhaber:
More Than 1, 001 Problems with Protein Domain Databases: Transmembrane Regions, Signal Peptides and the Issue of Sequence Homology. PLoS Comput. Biol. 6(7) (2010) - 2009
- [j14]Hong Sain Ooi, Chia Yee Kwoh, Michael Wildpaner, Fernanda L. Sirota, Birgit Eisenhaber, Sebastian Maurer-Stroh, Wing-Cheong Wong, Alexander Schleiffer, Frank Eisenhaber, Georg Schneider:
ANNIE: integrated de novo protein sequence annotation. Nucleic Acids Res. 37(Web-Server-Issue): 435-440 (2009) - [j13]Frank Eisenhaber, Chee Keong Kwoh, See-Kiong Ng, Wing-Kin Sung, Limsoon Wong:
Brief Overview of Bioinformatics Activities in Singapore. PLoS Comput. Biol. 5(9) (2009) - 2007
- [j12]Sebastian Maurer-Stroh, Manfred Koranda, Wolfgang Benetka, Georg Schneider, Fernanda L. Sirota, Frank Eisenhaber:
Towards Complete Sets of Farnesylated and Geranylgeranylated Proteins. PLoS Comput. Biol. 3(4) (2007) - 2006
- [j11]Georg Schneider, Georg Neuberger, Michael Wildpaner, Sun Tian, Igor N. Berezovsky, Frank Eisenhaber:
Application of a sensitive collection heuristic for very large protein families: Evolutionary relationship between adipose triglyceride lipase (ATGL) and classic mammalian lipases. BMC Bioinform. 7: 164 (2006) - [j10]Maria Novatchkova, Georg Schneider, Richard Fritz, Frank Eisenhaber, Alexander Schleiffer:
DOUTfinder - identification of distant domain outliers using subsignificant sequence similarity. Nucleic Acids Res. 34(Web-Server-Issue): 214-218 (2006) - 2005
- [j9]Maria Novatchkova, Andreas Bachmair, Birgit Eisenhaber, Frank Eisenhaber:
Proteins with two SUMO-like domains in chromatin-associated complexes: The RENi (Rad60-Esc2-NIP45) family. BMC Bioinform. 6: 22 (2005) - [j8]Maria Novatchkova, Michael Wildpaner, Dieter Schweizer, Frank Eisenhaber:
PhyloDome - visualization of taxonomic distributions of domains occurring in eukaryote protein sequence sets. Nucleic Acids Res. 33(Web-Server-Issue): 121-125 (2005) - 2004
- [j7]Miklós Cserzo, Frank Eisenhaber, Birgit Eisenhaber, István Simon:
TM or not TM: transmembrane protein prediction with low false positive rate using DAS-TMfilter. Bioinform. 20(1): 136-137 (2004) - 2003
- [j6]Stefan Washietl, Frank Eisenhaber:
Reannotation of the CELO genome characterizes a set of previously unassigned open reading frames and points to novel modes of host interaction in avian adenoviruses. BMC Bioinform. 4: 55 (2003) - [j5]Frank Eisenhaber, Birgit Eisenhaber, Werner Kubina, Sebastian Maurer-Stroh, Georg Neuberger, Georg Schneider, Michael Wildpaner:
Prediction of lipid posttranslational modifications and localization signals from protein sequences: big-, NMT and PTS1. Nucleic Acids Res. 31(13): 3631-3634 (2003) - 2001
- [j4]Michael Wildpaner, Georg Schneider, Alexander Schleiffer, Frank Eisenhaber:
Taxonomy workbench. Bioinform. 17(12): 1179-1182 (2001) - 1999
- [j3]Frank Eisenhaber, Peer Bork:
Evaluation of human-readable annotation in biomolecular sequence databases with biological rule libraries. Bioinform. 15(7): 528-535 (1999) - 1995
- [j2]Frank Eisenhaber, Philip Lijnzaad, Patrick Argos, Chris Sander, Michael Scharf:
The Double Cubic Lattice Method: Efficient Approaches to Numerical Integration of Surface Area and Volume and to Dot Surface Contouring of Molecular Assemblies. J. Comput. Chem. 16(3): 273-284 (1995) - 1993
- [j1]Frank Eisenhaber, Patrick Argos:
Improved strategy in analytic surface calculation for molecular systems: Handling of singularities and computational efficiency. J. Comput. Chem. 14(11): 1272-1280 (1993)
Conference and Workshop Papers
- 1998
- [c1]Shamil R. Sunyaev, Igor V. Rodchenkov, Frank Eisenhaber, Eugene N. Kuznetsov:
Analysis of the position dependent amino acid probabilities and its application to the search for remote homologues. RECOMB 1998: 258-265
Coauthor Index
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