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2020 – today
- 2024
[j13]Helder Veras Ribeiro filho
, Gabriel Ernesto Jara, João Victor da Silva Guerra, Melyssa Cheung, Nathaniel R. Felbinger, José Geraldo de Carvalho Pereira, Brian G. Pierce, Paulo Sérgio Lopes-de-Oliveira:
Exploring the potential of structure-based deep learning approaches for T cell receptor design. PLoS Comput. Biol. 20(9): 1012489 (2024)- 2023
- [j12]Rui Yin, Helder Veras Ribeiro filho, Valerie Lin, Ragul Gowthaman, Melyssa Cheung, Brian G. Pierce:
TCRmodel2: high-resolution modeling of T cell receptor recognition using deep learning. Nucleic Acids Res. 51(W1): 569-576 (2023) - 2021
- [j11]Tyler Borrman, Brian G. Pierce, Thom Vreven, Brian M. Baker, Zhiping Weng:
High-throughput modeling and scoring of TCR-pMHC complexes to predict cross-reactive peptides. Bioinform. 36(22-23): 5377-5385 (2021) - [j10]Ragul Gowthaman, Johnathan D. Guest, Rui Yin, Jared Adolf-Bryfogle, William R. Schief, Brian G. Pierce:
CoV3D: a database of high resolution coronavirus protein structures. Nucleic Acids Res. 49(Database-Issue): D282-D287 (2021) - [j9]Rui Yin, Johnathan D. Guest, Ghazaleh Taherzadeh, Ragul Gowthaman, Ipsa Mittra, Jane Quackenbush, Brian G. Pierce:
Structural and energetic profiling of SARS-CoV-2 receptor binding domain antibody recognition and the impact of circulating variants. PLoS Comput. Biol. 17(9) (2021)
2010 – 2019
- 2019
- [j8]Ragul Gowthaman, Brian G. Pierce:
TCR3d: The T cell receptor structural repertoire database. Bioinform. 35(24): 5323-5325 (2019) - 2018
- [j7]Ragul Gowthaman, Brian G. Pierce:
TCRmodel: high resolution modeling of T cell receptors from sequence. Nucleic Acids Res. 46(Webserver-Issue): W396-W401 (2018) - 2015
- [e1]Jun Huan, Satoru Miyano, Amarda Shehu, Xiaohua Tony Hu, Bin Ma, Sanguthevar Rajasekaran, Vijay K. Gombar, Matthieu-P. Schapranow, Illhoi Yoo, Jiayu Zhou, Brian Chen, Vinay Pai, Brian G. Pierce:
2015 IEEE International Conference on Bioinformatics and Biomedicine, BIBM 2015, Washington, DC, USA, November 9-12, 2015. IEEE Computer Society 2015, ISBN 978-1-4673-6799-8 [contents] - 2014
- [j6]Thom Vreven, Howook Hwang, Brian G. Pierce, Zhiping Weng:
Evaluating template-based and template-free protein-protein complex structure prediction. Briefings Bioinform. 15(2): 169-176 (2014) - [j5]Brian G. Pierce, Kevin Wiehe, Howook Hwang, Bong-Hyun Kim, Thom Vreven, Zhiping Weng:
ZDOCK server: interactive docking prediction of protein-protein complexes and symmetric multimers. Bioinform. 30(12): 1771-1773 (2014) - [j4]Brian G. Pierce, Thom Vreven, Zhiping Weng:
Modeling T cell receptor recognition of CD1-lipid and MR1-metabolite complexes. BMC Bioinform. 15: 319 (2014) - [j3]Brian G. Pierce, Lance M. Hellman, Moushumi Hossain, Nishant K. Singh, Craig W. Vander Kooi, Zhiping Weng, Brian M. Baker:
Computational Design of the Affinity and Specificity of a Therapeutic T Cell Receptor. PLoS Comput. Biol. 10(2) (2014) - 2013
- [j2]Jie Wang, Jiali Zhuang, Sowmya Iyer, Xin-Ying Lin, Melissa C. Greven, Bong-Hyun Kim, Jill Moore, Brian G. Pierce, Xianjun Dong, Daniel Virgil, Ewan Birney, Jui-Hung Hung, Zhiping Weng:
Factorbook.org: a Wiki-based database for transcription factor-binding data generated by the ENCODE consortium. Nucleic Acids Res. 41(Database-Issue): 171-176 (2013)
2000 – 2009
- 2005
- [j1]Brian G. Pierce, Weiwei Tong, Zhiping Weng:
M-ZDOCK: a grid-based approach for Cn symmetric multimer docking. Bioinform. 21(8): 1472-1478 (2005)
Coauthor Index
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