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2020 – today
- 2024
[j17]Hegang Chen
, Yuyin Lu, Zhiming Dai, Yuedong Yang, Qing Li, Yanghui Rao:
Comprehensive single-cell RNA-seq analysis using deep interpretable generative modeling guided by biological hierarchy knowledge. Briefings Bioinform. 25(4) (2024)- [j16]Yuefan Lin, Zixiang Pan, Yuansong Zeng, Yuedong Yang, Zhiming Dai:
Detecting novel cell type in single-cell chromatin accessibility data via open-set domain adaptation. Briefings Bioinform. 25(5) (2024) - [j15]Weichao Ding, Fei Luo, Chunhua Gu, Zhiming Dai, Haifeng Lu:
A Multiagent Meta-Based Task Offloading Strategy for Mobile-Edge Computing. IEEE Trans. Cogn. Dev. Syst. 16(1): 100-114 (2024) - [c8]Shenshen Bu, Yujie Song, Taiji Li, Zhiming Dai:
Dynamic Knowledge Prompt for Chest X-ray Report Generation. LREC/COLING 2024: 5425-5436 - [c7]Shenshen Bu, Taiji Li, Yuedong Yang, Zhiming Dai:
Instance-level Expert Knowledge and Aggregate Discriminative Attention for Radiology Report Generation. CVPR 2024: 14194-14204 - [c6]Yuefan Lin, Zhiming Dai:
Insights into Secondary Mutational Genes in Knockout Strains. ICBBT 2024: 84-87 - 2023
- [j14]Guishan Zhang, Ye Luo, Xianhua Dai, Zhiming Dai:
Benchmarking deep learning methods for predicting CRISPR/Cas9 sgRNA on- and off-target activities. Briefings Bioinform. 24(6) (2023) - [j13]Jiahao Zheng, Yuedong Yang, Zhiming Dai:
Subgraph extraction and graph representation learning for single cell Hi-C imputation and clustering. Briefings Bioinform. 25(1) (2023) - [c5]Siqi Xiao, Zhiming Dai:
CSIFNet: Deep multimodal network based on cellular spatial information fusion for survival prediction. BIBM 2023: 944-948 - [c4]Shenshen Bu, Taiji Li, Zhiming Dai:
Enhancing Medical Report Generation in Multi-Slice Fusion Scenarios. BIBM 2023: 1030-1037 - [c3]Zhiming Dai:
Transcription Factor-target Relationships Complicated by Knockout Analysis. ICBBT 2023: 83-89 - 2020
- [j12]Haitao Yu, Zhiming Dai:
SANPolyA: a deep learning method for identifying Poly(A) signals. Bioinform. 36(8): 2393-2400 (2020)
2010 – 2019
- 2017
- [j11]Yuanyan Xiong, Xiaowei Xie, Yanzhi Wang, Wenbin Ma, Puping Liang, Songyang Zhou, Zhiming Dai:
pgRNAFinder: a web-based tool to design distance independent paired-gRNA. Bioinform. 33(22): 3642-3644 (2017) - 2016
- [j10]Xiaowei Xie, Wenbin Ma, Songyang Zhou, Zhenhua Luo, Junfeng Huang, Zhiming Dai, Yuanyan Xiong:
CCSI: a database providing chromatin-chromatin spatial interaction information. Database J. Biol. Databases Curation 2016 (2016) - 2015
- [j9]Zhenhua Luo, Zhiming Dai, Xiaowei Xie, Xuyang Feng, Dan Liu, Songyang Zhou, Yuanyan Xiong:
TeloPIN: a database of telomeric proteins interaction network in mammalian cells. Database J. Biol. Databases Curation 2015 (2015) - 2013
- [j8]Qingyan Li, Shuabin Lian, Zhiming Dai, Qian Xiang, Xianhua Dai:
BGDB: a database of bivalent genes. Database J. Biol. Databases Curation 2013 (2013) - 2012
- [j7]Zhiming Dai, Xianhua Dai:
Antisense transcription is coupled to nucleosome occupancy in sense promoters. Bioinform. 28(21): 2719-2723 (2012) - 2011
- [j6]Zhiming Dai, Xianhua Dai, Qian Xiang:
Genome-wide DNA sequence polymorphisms facilitate nucleosome positioning in yeast. Bioinform. 27(13): 1758-1764 (2011) - [j5]Zhiming Dai, Xianhua Dai:
Gene Expression Divergence is Coupled to Evolution of DNA Structure in Coding Regions. PLoS Comput. Biol. 7(11) (2011) - 2010
- [j4]Jihua Feng, Xianhua Dai, Zhiming Dai, Qian Xiang, Jiang Wang, Yangyang Deng, Caisheng He:
A simulation model for nucleosome distribution in the yeast genome based on integrated cross-platform positioning datasets. Math. Comput. Model. 52(11-12): 1932-1939 (2010) - [c2]Jiang Wang, Xianhua Dai, Qian Xiang, Yangyang Deng, Jihua Feng, Zhiming Dai, Caisheng He:
Insights into the combinatorial effects of histone modifications in yeast using association rule mining. BIC-TA 2010: 11-15
2000 – 2009
- 2009
- [j3]Zhiming Dai, Xianhua Dai, Qian Xiang, Jihua Feng, Yangyang Deng, Jiang Wang, Caisheng He:
Transcriptional interaction-assisted identification of dynamic nucleosome positioning. BMC Bioinform. 10(S-1) (2009) - [j2]Zhiming Dai, Xianhua Dai, Qian Xiang, Jihua Feng:
Nucleosomal Context of Binding Sites Influences Transcription Factor Binding Affinity and Gene Regulation. Genom. Proteom. Bioinform. 7(4): 155-162 (2009) - 2008
- [j1]Qian Xiang, Xianhua Dai, Yangyang Deng, Caisheng He, Jiang Wang, Jihua Feng, Zhiming Dai:
Missing value imputation for microarray gene expression data using histone acetylation information. BMC Bioinform. 9 (2008) - 2006
- [c1]Zhiming Dai, Xianhua Dai, Jiang Wang:
Identifying Transcription Factor Binding Sites Based on a Neural Network. ISNN (2) 2006: 722-727
Coauthor Index
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