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ORCIDOsmar Norberto de Souza
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2010 – 2019
- 2019
[c20]Walter Ritzel Paixão-Cortes, Vanessa Stangherlin Machado Paixão-Cortes, Cristiane Ellwanger, Osmar Norberto de Souza:
Development and Usability Evaluation of a Prototype Conversational Interface for Biological Information Retrieval via Bioinformatics. HCI (4) 2019: 575-593- 2018
- [j13]Renata De Paris, Christian Vahl Quevedo, Duncan D. Ruiz
, Furia Gargano, Osmar Norberto de Souza:
A selective method for optimizing ensemble docking-based experiments on an InhA Fully-Flexible receptor model. BMC Bioinform. 19(1): 235:1-235:16 (2018) - [j12]Vanessa Stangherlin Machado Paixão-Cortes, Michele dos Santos da Silva Tanus, Walter Ritzel Paixão-Cortes, Osmar Norberto de Souza, Márcia de Borba Campos, Milene Selbach Silveira:
Usability as the Key Factor to the Design of a Web Server for the CReF Protein Structure Predictor: The wCReF. Inf. 9(1): 20 (2018) - [c19]Vanessa Stangherlin Machado Paixão-Cortes, Walter Ritzel Paixão-Cortes, Márcia de Borba Campos, Osmar Norberto de Souza:
A Panorama on Selection and Use of Bioinformatics Tools in the Brazilian University Context. HCI (8) 2018: 553-573 - 2017
- [c18]Vanessa Stangherlin Machado, Walter Ritzel Paixão-Cortes, Osmar Norberto de Souza, Márcia de Borba Campos:
Decision-Making for Interactive Systems: A Case Study for Teaching and Learning in Bioinformatics. HCI (26) 2017: 90-109 - 2016
- [c17]Thiago Lipinski-Paes, Michele dos Santos da Silva Tanus, José Fernando Ruggiero Bachega, Osmar Norberto de Souza:
A Multiagent Ab Initio Protein Structure Prediction Tool for Novices and Experts. ISBRA 2016: 163-174 - 2015
- [j11]Renata De Paris, Christian Vahl Quevedo, Duncan Dubugras A. Ruiz, Osmar Norberto de Souza, Rodrigo C. Barros:
Clustering Molecular Dynamics Trajectories for Optimizing Docking Experiments. Comput. Intell. Neurosci. 2015: 916240:1-916240:9 (2015) - [c16]Renata De Paris, Duncan Dubugras A. Ruiz, Osmar Norberto de Souza:
A Cloud-Based Workflow Approach for Optimizing Molecular Docking Simulations of Fully-Flexible Receptor Models and Multiple Ligands. CloudCom 2015: 495-498 - [c15]Patricia Hübler, Duncan Dubugras A. Ruiz, João Eduardo Ferreira, Osmar Norberto de Souza:
P-SaMI: a data-flow pattern to perform massively-parallel molecular docking experiments using a fully-flexible receptor model. SAC 2015: 54-57 - 2014
- [j10]Christian Vahl Quevedo, Renata De Paris, Duncan D. Ruiz, Osmar Norberto de Souza:
A strategic solution to optimize molecular docking simulations using Fully-Flexible Receptor models. Expert Syst. Appl. 41(16): 7608-7620 (2014) - [c14]Thiago Lipinski-Paes, Osmar Norberto de Souza:
MASTERS: A General Sequence-based MultiAgent System for Protein TERtiary Structure Prediction. CS2Bio 2014: 45-59 - 2013
- [j9]Karina C. M. Dall'Agno, Osmar Norberto de Souza:
An expert protein loop refinement protocol by molecular dynamics simulations with restraints. Expert Syst. Appl. 40(7): 2568-2574 (2013) - [j8]Márcio Dorn, Osmar Norberto de Souza:
An interval-based algorithm to represent conformational states of experimentally determined polypeptide templates and fast prediction of approximated 3D protein structures. Int. J. Bioinform. Res. Appl. 9(5): 462-486 (2013) - [j7]Ivani Pauli, Ricardo N. dos Santos, Diana C. Rostirolla, Leonardo K. Martinelli, Rodrigo G. Ducati, Luís Fernando S. M. Timmers, Luiz Augusto Basso, Diógenes Santiago Santos, Rafael V. C. Guido, Adriano D. Andricopulo, Osmar Norberto de Souza:
Discovery of New Inhibitors of Mycobacterium tuberculosis InhA Enzyme Using Virtual Screening and a 3D-Pharmacophore-Based Approach. J. Chem. Inf. Model. 53(9): 2390-2401 (2013) - 2012
- [j6]Rodrigo C. Barros, Ana T. Winck, Karina S. Machado, Márcio P. Basgalupp, André Carlos Ponce de Leon Ferreira de Carvalho, Duncan D. Ruiz, Osmar Norberto de Souza:
Automatic design of decision-tree induction algorithms tailored to flexible-receptor docking data. BMC Bioinform. 13: 310 (2012) - [c13]Ana T. Winck, Christian Vahl Quevedo, Karina S. Machado, Osmar Norberto de Souza, Duncan D. Ruiz:
A Comparative Analysis of Public Ligand Databases Based on Molecular Descriptors. BSB 2012: 156-167 - 2011
- [j5]Karina S. Machado, Ana T. Winck, Duncan D. Ruiz, Osmar Norberto de Souza:
Mining flexible-receptor molecular docking data. WIREs Data Mining Knowl. Discov. 1(6): 532-541 (2011) - [c12]Renata De Paris, Fábio A. Frantz, Osmar Norberto de Souza, Duncan D. Ruiz:
A Conceptual Many Tasks Computing Architecture to Execute Molecular Docking Simulations of a Fully-Flexible Receptor Model. BSB 2011: 75-78 - [e1]Osmar Norberto de Souza, Guilherme P. Telles, Mathew J. Palakal:
Advances in Bioinformatics and Computational Biology - 6th Brazilian Symposium on Bioinformatics, BSB 2011, Brasilia, Brazil, August 10-12, 2011. Proceedings. Lecture Notes in Computer Science 6832, Springer 2011, ISBN 978-3-642-22824-7 [contents] - 2010
- [j4]Márcio Dorn, Osmar Norberto de Souza:
A3N: An artificial neural network n-gram-based method to approximate 3-D polypeptides structure prediction. Expert Syst. Appl. 37(12): 7497-7508 (2010) - [j3]Márcio Dorn, Osmar Norberto de Souza:
Mining the Protein Data Bank with CReF to predict approximate 3-D structures of polypeptides. Int. J. Data Min. Bioinform. 4(3): 281-299 (2010) - [c11]Karina S. Machado, Ana T. Winck, Duncan D. Ruiz, Osmar Norberto de Souza:
Discretization of Flexible-Receptor Docking Data. BSB 2010: 75-79
2000 – 2009
- 2009
- [c10]Ana T. Winck, Karina S. Machado, Osmar Norberto de Souza, Duncan D. Ruiz:
FReDD: Supporting Mining Strategies through a Flexible-Receptor Docking Database. BSB 2009: 143-146 - 2008
- [c9]Márcio Dorn, Osmar Norberto de Souza:
CReF: a central-residue-fragment-based method for predicting approximate 3-D polypeptides structures. SAC 2008: 1261-1267 - [c8]Márcio Dorn, Ardala Breda, Osmar Norberto de Souza:
A Hybrid Method for the Protein Structure Prediction Problem. BSB 2008: 47-56 - [c7]Karina S. Machado, Evelyn K. Schroeder, Duncan D. Ruiz, Ana Wink, Osmar Norberto de Souza:
Extracting Information from Flexible Receptor-Flexible Ligand Docking Experiments. BSB 2008: 104-114 - 2007
- [j2]Cláudia Lemelle Fernandes, Ardala Breda, Diógenes Santiago Santos, Luiz Augusto Basso, Osmar Norberto de Souza:
A structural model for chorismate synthase from Mycobacterium tuberculosis in complex with coenzyme and substrate. Comput. Biol. Medicine 37(2): 149-158 (2007) - [c6]Karina S. Machado, Evelyn K. Schroeder, Duncan D. Ruiz, Osmar Norberto de Souza:
Automating Molecular Docking with Explicit Receptor Flexibility Using Scientific Workflows. BSB 2007: 1-11 - 2006
- [c5]Ricardo M. Czekster, Osmar Norberto de Souza:
SimVIZ - A Desktop Virtual Environment for Visualization and Analysis of Protein Multiple Simulation Trajectories. ICCSA (1) 2006: 202-211 - 2005
- [c4]Marco Aurélio Stelmar Netto, Ardala Breda, Osmar Norberto de Souza:
Scheduling complex computer simulations on heterogeneous non-dedicated machines: a case study in structural bioinformatics. CCGRID 2005: 768-775 - [c3]Andrei Oliveira da Silva, Osmar Norberto de Souza:
A framework for result handling in bioinformatics: an application to computer assisted drug design. SAC 2005: 128-132 - [c2]Cláudia Lemelle Fernandes, Diógenes Santiago Santos, Luiz Augusto Basso, Osmar Norberto de Souza:
Structure Prediction and Docking Studies of Chorismate Synthase from Mycobacterium Tuberculosis. BSB 2005: 118-127 - [c1]Ricardo M. Czekster, Osmar Norberto de Souza:
VIZ - A Graphical Open-Source Architecture for Use in Structural Bioinformatics. BSB 2005: 226-229
1990 – 1999
- 1994
- [j1]Osmar Norberto de Souza, Julia M. Goodfellow:
Molecular dynamics simulations of oligonucleotides in solution: Visualisation of intrinsic curvature. J. Comput. Aided Mol. Des. 8(3): 307-322 (1994)
Coauthor Index
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