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Jun Cheng 0007

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affiliation: NEC Laboratories Europe GmbH, Heidelberg, Germany
affiliation: Technical University of Munich, Department of Informatics, QBM, Garching, Germany

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2020 – today

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2021
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Jun Cheng, Kaïdre Bendjama, Karola Rittner, Brandon M. Malone:
BERTMHC: improved MHC-peptide class II interaction prediction with transformer and multiple instance learning. Bioinform. 37(22): 4172-4179 (2021)
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Jun Cheng, Carolin Lawrence, Mathias Niepert:
VEGN: Variant Effect Prediction with Graph Neural Networks. CoRR abs/2106.13642 (2021)

2010 – 2019

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2018
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  - journals/bioinformatics/AvsecBCG18
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Ziga Avsec, Mohammadamin Barekatain, Jun Cheng, Julien Gagneur:
Modeling positional effects of regulatory sequences with spline transformations increases prediction accuracy of deep neural networks. Bioinform. 34(8): 1261-1269 (2018)
2016
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Jun Cheng, Franziska Metge, Christoph Dieterich:
Specific identification and quantification of circular RNAs from sequencing data. Bioinform. 32(7): 1094-1096 (2016)

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