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Jesse A. Gillis
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2020 – today
- 2024
- [j18]Hector Roux de Bézieux, Kelly Street, Stephan Fischer, Koen Van den Berge, Rebecca Chance, Davide Risso, Jesse A. Gillis, John Ngai, Elizabeth Purdom, Sandrine Dudoit:
Improving replicability in single-cell RNA-Seq cell type discovery with Dune. BMC Bioinform. 25(1): 198 (2024) - 2023
- [j17]Risa Karakida Kawaguchi, Ziqi Tang, Stephan Fischer, Chandana Rajesh, Rohit Tripathy, Peter K. Koo, Jesse A. Gillis:
Learning single-cell chromatin accessibility profiles using meta-analytic marker genes. Briefings Bioinform. 24(1) (2023) - 2022
- [j16]Stephan Fischer, Jesse A. Gillis:
Defining the extent of gene function using ROC curvature. Bioinform. 38(24): 5390-5397 (2022) - 2020
- [j15]John Lee, Manthan Shah, Sara Ballouz, Megan Crow, Jesse A. Gillis:
CoCoCoNet: conserved and comparative co-expression across a diverse set of species. Nucleic Acids Res. 48(Webserver-Issue): W566-W571 (2020)
2010 – 2019
- 2017
- [j14]Sara Ballouz, Melanie Weber, Paul Pavlidis, Jesse A. Gillis:
EGAD: ultra-fast functional analysis of gene networks. Bioinform. 33(4): 612-614 (2017) - 2016
- [j13]Wim Verleyen, Sara Ballouz, Jesse A. Gillis:
Positive and negative forms of replicability in gene network analysis. Bioinform. 32(7): 1065-1073 (2016) - [j12]Sara Ballouz, Jesse A. Gillis:
AuPairWise: A Method to Estimate RNA-Seq Replicability through Co-expression. PLoS Comput. Biol. 12(4) (2016) - 2015
- [j11]Wim Verleyen, Sara Ballouz, Jesse A. Gillis:
Measuring the wisdom of the crowds in network-based gene function inference. Bioinform. 31(5): 745-752 (2015) - [j10]Sara Ballouz, Wim Verleyen, Jesse A. Gillis:
Guidance for RNA-seq co-expression network construction and analysis: safety in numbers. Bioinform. 31(13): 2123-2130 (2015) - 2013
- [j9]Jesse A. Gillis, Paul Pavlidis:
Assessing identity, redundancy and confounds in Gene Ontology annotations over time. Bioinform. 29(4): 476-482 (2013) - [j8]Jesse A. Gillis, Paul Pavlidis:
Characterizing the state of the art in the computational assignment of gene function: lessons from the first critical assessment of functional annotation (CAFA). BMC Bioinform. 14(S-3): S15 (2013) - 2012
- [j7]Anton Zoubarev, Kelsey M. Hamer, Kiran Keshav, E. Luke McCarthy, Joseph Roy C. Santos, Thea Van Rossum, Cameron McDonald, Adam Hall, Xiang Wan, Raymond Lim, Jesse A. Gillis, Paul Pavlidis:
Gemma: a resource for the reuse, sharing and meta-analysis of expression profiling data. Bioinform. 28(17): 2272-2273 (2012) - [j6]Jesse A. Gillis, Paul Pavlidis:
"Guilt by Association" Is the Exception Rather Than the Rule in Gene Networks. PLoS Comput. Biol. 8(3) (2012) - [i1]Paul Pavlidis, Jesse A. Gillis:
Progress and challenges in the computational prediction of gene function using networks. F1000Research 1: 14 (2012) - 2011
- [j5]Jesse A. Gillis, Paul Pavlidis:
The role of indirect connections in gene networks in predicting function. Bioinform. 27(13): 1860-1866 (2011) - 2010
- [j4]Jesse A. Gillis, Liang Zhang, Frances K. Skinner:
Spatial coherence and stationarity of local field potentials in an isolated whole hippocampal preparation in vitro. J. Comput. Neurosci. 29(3): 521-532 (2010)
2000 – 2009
- 2009
- [j3]Jesse A. Gillis, Paul Pavlidis:
A methodology for the analysis of differential coexpression across the human lifespan. BMC Bioinform. 10: 306 (2009) - 2006
- [j2]Jesse A. Gillis, Liang Zhang, Frances K. Skinner:
Deficiencies in traditional measures of in vitro hippocampal rhythms. Neurocomputing 69(10-12): 1385-1390 (2006) - 2005
- [j1]Jesse A. Gillis, W. P. Luk, Liang Zhang, Frances K. Skinner:
Characterizing in vitro hippocampal ripples using time-frequency analysis. Neurocomputing 65-66: 357-364 (2005)
Coauthor Index
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