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Journal Articles
- 2014
[j12]Sebastian Bartschat, Stephanie Kehr
, Hakim Tafer, Peter F. Stadler, Jana Hertel:
snoStrip: a snoRNA annotation pipeline. Bioinform. 30(1): 115-116 (2014)- [j11]Juliane C. Dohm, André E. Minoche, Daniela Holtgräwe, Salvador Capella-Gutiérrez, Falk Zakrzewski, Hakim Tafer, Oliver Rupp, Thomas Rosleff Sörensen, Ralf Stracke, Richard Reinhardt, Alexander Goesmann, Thomas Kraft, Britta Schulz, Peter F. Stadler, Thomas Schmidt, Toni Gabaldón, Hans Lehrach, Bernd Weisshaar, Heinz Himmelbauer:
The genome of the recently domesticated crop plant sugar beet (Beta vulgaris) Open. Nat. 505(7484): 546-549 (2014) - 2013
- [j10]Radhakrishnan Sabarinathan, Hakim Tafer, Stefan E. Seemann, Ivo L. Hofacker, Peter F. Stadler, Jan Gorodkin:
The RNAsnp web server: predicting SNP effects on local RNA secondary structure. Nucleic Acids Res. 41(Webserver-Issue): 475-479 (2013) - 2011
- [j9]Ronny Lorenz, Stephan H. Bernhart, Christian Höner zu Siederdissen, Hakim Tafer, Christoph Flamm, Peter F. Stadler, Ivo L. Hofacker:
ViennaRNA Package 2.0. Algorithms Mol. Biol. 6: 26 (2011) - [j8]Stephanie Kehr, Sebastian Bartschat, Peter F. Stadler, Hakim Tafer:
PLEXY: efficient target prediction for box C/D snoRNAs. Bioinform. 27(2): 279-280 (2011) - [j7]Hakim Tafer, Fabian Amman, Florian Eggenhofer, Peter F. Stadler, Ivo L. Hofacker:
Fast accessibility-based prediction of RNA-RNA interactions. Bioinform. 27(14): 1934-1940 (2011) - [j6]Florian Eggenhofer, Hakim Tafer, Peter F. Stadler, Ivo L. Hofacker:
RNApredator: fast accessibility-based prediction of sRNA targets. Nucleic Acids Res. 39(Web-Server-Issue): 149-154 (2011) - 2010
- [j5]Hakim Tafer, Stephanie Kehr, Jana Hertel, Ivo L. Hofacker, Peter F. Stadler:
RNAsnoop: efficient target prediction for H/ACA snoRNAs. Bioinform. 26(5): 610-616 (2010) - 2008
- [j4]Hakim Tafer, Ivo L. Hofacker:
RNAplex: a fast tool for RNA-RNA interaction search. Bioinform. 24(22): 2657-2663 (2008) - [j3]Radka Svobodová Vareková, Ivan Bradác, Martin Plchút, Michal Skrdla, Michael Wacenovsky, Helmuth Mahr, Georg Mayer, Herbert Tanner, Hermann Brugger, Josef Withalm, Peter Lederer, Heinrich J. Huber, Gerhard Gierlinger, Ronald Graf, Hakim Tafer, Ivo L. Hofacker, Peter Schuster, Martin Polcík:
www.rnaworkbench.com: A new program for analyzing RNA interference. Comput. Methods Programs Biomed. 90(1): 89-94 (2008) - 2006
- [j2]Stephan H. Bernhart, Hakim Tafer, Ulrike Mückstein, Christoph Flamm, Peter F. Stadler, Ivo L. Hofacker:
Partition function and base pairing probabilities of RNA heterodimers. Algorithms Mol. Biol. 1 (2006) - [j1]Ulrike Mückstein, Hakim Tafer, Jörg Hackermüller, Stephan H. Bernhart, Peter F. Stadler, Ivo L. Hofacker:
Thermodynamics of RNA-RNA binding. Bioinform. 22(10): 1177-1182 (2006)
Conference and Workshop Papers
- 2011
- [c4]David Langenberger, Sebastian Bartschat, Jana Hertel, Steve Hoffmann, Hakim Tafer, Peter F. Stadler:
MicroRNA or Not MicroRNA? BSB 2011: 1-9 - 2008
- [c3]Ulrike Mückstein, Hakim Tafer, Stephan H. Bernhart, Maribel Hernandez-Rosales, Jörg Vogel, Peter F. Stadler, Ivo L. Hofacker:
Translational Control by RNA-RNA Interaction: Improved Computation of RNA-RNA Binding Thermodynamics. BIRD 2008: 114-127 - 2007
- [c2]Hakim Tafer:
RNAplex a Fast and Flexible RNA-RNA Interaction Search Tool. German Conference on Bioinformatics 2007: 56-67 - 2005
- [c1]Ulrike Mückstein, Hakim Tafer, Jörg Hackermüller, Stephan H. Bernhart, Peter F. Stadler, Ivo L. Hofacker:
Thermodynamics of RNA-RNA Binding. German Conference on Bioinformatics 2005: 3-13
Coauthor Index
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