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Journal Articles
- 2023
[j11]Richard A. Schäfer
, Dominik Rabsch, Guillaume E. Scholz, Peter F. Stadler, Wolfgang R. Hess, Rolf Backofen, Jörg Fallmann, Björn Voß:
RNA interaction format: a general data format for RNA interactions. Bioinform. 39(10) (2023)- 2021
- [j10]Thomas Gatter, Sarah von Löhneysen, Jörg Fallmann, Polina Drozdova, Tom Hartmann, Peter F. Stadler:
LazyB: fast and cheap genome assembly. Algorithms Mol. Biol. 16(1): 8 (2021) - [j9]Halima Saker, Rainer Machné, Jörg Fallmann, Douglas B. Murray, Ahmad M. Shahin, Peter F. Stadler:
Weighted Consensus Segmentations. Comput. 9(2): 17 (2021) - 2020
- [j8]Rituparno Sen, Jörg Fallmann, Maria Emília M. T. Walter, Peter F. Stadler:
Are spliced ncRNA host genes distinct classes of lncRNAs? Theory Biosci. 139(4): 349-359 (2020) - 2019
- [j7]Ali M. Yazbeck, Peter F. Stadler, Kifah Tout, Jörg Fallmann:
Automatic curation of large comparative animal MicroRNA datasets. Bioinform. 35(22): 4553-4559 (2019) - [j6]Jörg Fallmann, Pavankumar Videm, Andrea Bagnacani, Bérénice Batut, Maria A. Doyle, Tomas Klingström, Florian Eggenhofer, Peter F. Stadler, Rolf Backofen, Björn A. Grüning:
The RNA workbench 2.0: next generation RNA data analysis. Nucleic Acids Res. 47(Webserver-Issue): W511-W515 (2019) - 2018
- [j5]Anne Hoffmann, Jörg Fallmann, Elisa Vilardo, Mario Mörl, Peter F. Stadler, Fabian Amman:
Accurate mapping of tRNA reads. Bioinform. 34(7): 1116-1124 (2018) - [j4]Anne Hoffmann, Jörg Fallmann, Elisa Vilardo, Mario Mörl, Peter F. Stadler, Fabian Amman:
Accurate mapping of tRNA reads. Bioinform. 34(13): 2339 (2018) - 2017
- [j3]Björn A. Grüning, Jörg Fallmann, Dilmurat Yusuf, Sebastian Will, Anika Erxleben, Florian Eggenhofer, Torsten Houwaart, Bérénice Batut, Pavankumar Videm, Andrea Bagnacani, Markus Wolfien, Steffen Lott, Youri Hoogstrate, Wolfgang R. Hess, Olaf Wolkenhauer, Steve Hoffmann, Altuna Akalin, Uwe Ohler, Peter F. Stadler, Rolf Backofen:
The RNA workbench: best practices for RNA and high-throughput sequencing bioinformatics in Galaxy. Nucleic Acids Res. 45(Webserver-Issue): W560-W566 (2017) - 2016
- [j2]Jörg Fallmann, Vitaly Sedlyarov, Andrea Tanzer, Pavel Kovarik, Ivo L. Hofacker:
AREsite2: an enhanced database for the comprehensive investigation of AU/GU/U-rich elements. Nucleic Acids Res. 44(Database-Issue): 90-95 (2016) - 2011
- [j1]Andreas R. Gruber, Jörg Fallmann, Franz Kratochvill, Pavel Kovarik, Ivo L. Hofacker:
AREsite: a database for the comprehensive investigation of AU-rich elements. Nucleic Acids Res. 39(Database-Issue): 66-69 (2011)
Conference and Workshop Papers
- 2021
- [c1]Mirele C. S. F. Costa, João Victor de Araújo Oliveira, Waldeyr M. C. Silva, Rituparno Sen, Jörg Fallmann, Peter F. Stadler, Maria Emília M. T. Walter:
Machine Learning Studies of Non-coding RNAs based on Artificially Constructed Training Data. BIOINFORMATICS 2021: 176-183
Data and Artifacts
- 2023
- [d1]Christopher Klapproth, Siegfried Zöztsche, Felix Kühnl, Jörg Fallmann, Peter F. Stadler, Sven Findeiß:
Tailored machine learning models for functional RNA detection in genome-wide screens. Zenodo, 2023
Coauthor Index
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