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2010 – 2019
- 2016
[j12]Tyler W. H. Backman
, Thomas Girke:
systemPipeR: NGS workflow and report generation environment. BMC Bioinform. 17: 388 (2016)- [j11]Tyler W. H. Backman, Thomas Girke:
bioassayR: Cross-Target Analysis of Small Molecule Bioactivity. J. Chem. Inf. Model. 56(7): 1237-1242 (2016) - 2014
- [j10]Ergude Bao, Tao Jiang, Thomas Girke:
AlignGraph: algorithm for secondary de novo genome assembly guided by closely related references. Bioinform. 30(12): 319-328 (2014) - 2013
- [j9]Ergude Bao, Tao Jiang, Thomas Girke:
BRANCH: boosting RNA-Seq assemblies with partial or related genomic sequences. Bioinform. 29(10): 1250-1259 (2013) - [j8]Ei-Wen Yang, Thomas Girke, Tao Jiang:
Differential gene expression analysis using coexpression and RNA-Seq data. Bioinform. 29(17): 2153-2161 (2013) - [j7]Yan Wang, Tyler W. H. Backman, Kevin Horan, Thomas Girke:
fmcsR: mismatch tolerant maximum common substructure searching in R. Bioinform. 29(21): 2792-2794 (2013) - [c2]Ei-Wen Yang, Thomas Girke, Tao Jiang:
Differential gene expression analysis using coexpression and RNA-Seq data. ICCABS 2013: 1 - 2011
- [j6]Ergude Bao, Tao Jiang, Isgouhi Kaloshian, Thomas Girke:
SEED: efficient clustering of next-generation sequences. Bioinform. 27(18): 2502-2509 (2011) - [j5]Tyler W. H. Backman, Yiqun Cao, Thomas Girke:
ChemMine tools: an online service for analyzing and clustering small molecules. Nucleic Acids Res. 39(Web-Server-Issue): 486-491 (2011) - 2010
- [j4]Yiqun Cao, Tao Jiang, Thomas Girke:
Accelerated similarity searching and clustering of large compound sets by geometric embedding and locality sensitive hashing. Bioinform. 26(7): 953-959 (2010) - [j3]Xinping Cui, Na You, Thomas Girke, Richard Michelmore, Allen Van Deynze:
Single feature polymorphism detection using recombinant inbred line microarray expression data. Bioinform. 26(16): 1983-1989 (2010) - [j2]Kevin Horan, Christian R. Shelton, Thomas Girke:
Predicting conserved protein motifs with Sub-HMMs. BMC Bioinform. 11: 205 (2010)
2000 – 2009
- 2008
- [j1]Yiqun Cao, Anna Charisi, Li-Chang Cheng, Tao Jiang, Thomas Girke:
ChemmineR: a compound mining framework for R. Bioinform. 24(15): 1733-1734 (2008) - [c1]Yiqun Cao, Tao Jiang, Thomas Girke:
A maximum common substructure-based algorithm for searching and predicting drug-like compounds. ISMB 2008: 366-374
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