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Journal Articles
- 2012
[j10]Chengpeng Bi:
Memetic algorithms for de novo motif-finding in biomedical sequences. Artif. Intell. Medicine 56(1): 1-17 (2012)- 2010
- [j9]Chengpeng Bi:
Deterministic local alignment methods improved by a simple genetic algorithm. Neurocomputing 73(13-15): 2394-2406 (2010) - [j8]Chengpeng Bi:
Comparison of optimization techniques for sequence pattern discovery by maximum-likelihood. Pattern Recognit. Lett. 31(14): 2147-2160 (2010) - 2009
- [j7]Chengpeng Bi:
DNA motif alignment by evolving a population of Markov chains. BMC Bioinform. 10(S-1) (2009) - [j6]Chengpeng Bi:
A Monte Carlo EM Algorithm for De Novo Motif Discovery in Biomolecular Sequences. IEEE ACM Trans. Comput. Biol. Bioinform. 6(3): 370-386 (2009) - 2008
- [j5]Chengpeng Bi:
Computational intelligence in multiple sequence alignment. Int. J. Intell. Comput. Cybern. 1(1): 8-24 (2008) - 2007
- [j4]Chengpeng Bi, Michael C. Saunders, Bruce A. McPheron:
Wing Pattern-Based Classification of the Rhagoletis pomonella Species Complex Using Genetic Neural Networks. Int. J. Comput. Sci. Appl. 4(3): 1-14 (2007) - [j3]Chengpeng Bi:
Seam: a Stochastic EM-Type Algorithm for Motif-Finding in Biopolymer Sequences. J. Bioinform. Comput. Biol. 5(1): 47-77 (2007) - 2006
- [j2]Chengpeng Bi, Peter K. Rogan
:
BIPAD: A web server for modeling bipartite sequence elements. BMC Bioinform. 7: 76 (2006) - 2004
- [j1]Craig J. Benham, Chengpeng Bi:
The Analysis of Stress-Induced Duplex Destabilization in Long Genomic DNA Sequences. J. Comput. Biol. 11(4): 519-543 (2004)
Conference and Workshop Papers
- 2012
- [c10]Chengpeng Bi, J. Steven Leeder:
Large-scale computation of pediatric growth percentiles with fuzzy logic justification of parameter selection. CIBCB 2012: 43-46 - 2011
- [c9]Chengpeng Bi:
Tackling the challenging motif problem through hybrid particle swarm optimized alignment clustering. CIBCB 2011: 84-91 - [c8]Chengpeng Bi, Mara Becker, J. Steven Leeder:
Derivation of minimum best sample size from microarray data sets: A Monte Carlo approach. CIBCB 2011: 129-134 - 2010
- [c7]Chengpeng Bi, Carrie A. Vyhlidal, J. Steven Leeder:
Supervised learning of maternal cigarette-smoking signatures from placental gene expression data: A case study. CIBCB 2010: 1-6 - 2008
- [c6]Chengpeng Bi:
Evolutionary metropolis sampling in sequence alignment space. IEEE Congress on Evolutionary Computation 2008: 189-194 - [c5]Chengpeng Bi, Michael C. Saunders, Bruce A. McPheron:
Neuro-fuzzy classification of the Rhagoletis pomonella species group using digitized wing structures. CIBCB 2008: 159-165 - 2007
- [c4]Chengpeng Bi:
A Genetic-Based EM Motif-Finding Algorithm for Biological Sequence Analysis. CIBCB 2007: 275-282 - [c3]Chengpeng Bi:
A Survey of in silico Motif Discovery and Computational Intelligence Applications. IC-AI 2007: 147-153 - [c2]Chengpeng Bi:
Multiple Sequence Local Alignment Using Monte Carlo EM Algorithm. ISBRA 2007: 465-476 - 2003
- [c1]Chengpeng Bi, Craig J. Benham:
The Approximate Algorithm for Analysis of the Strand Separation Transition in Super helical DNA Using Nearest Neighbor Energetics. CSB 2003: 460-461
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