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ORCIDZaida Luthey-Schulten
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Journal Articles
- 2021
[j14]Melih Sener, Stuart Levy, John E. Stone
, A. J. Christensen, Barry Isralewitz, Robert Patterson, Kalina Borkiewicz, Jeffrey Carpenter, C. Neil Hunter, Zaida Luthey-Schulten, Donna J. Cox:
Multiscale modeling and cinematic visualization of photosynthetic energy conversion processes from electronic to cell scales. Parallel Comput. 102: 102698 (2021)- 2020
- [j13]Zhaleh Ghaemi, Joseph R. Peterson, Martin Gruebele, Zaida Luthey-Schulten:
An in-silico human cell model reveals the influence of spatial organization on RNA splicing. PLoS Comput. Biol. 16(3) (2020) - 2017
- [j12]Piyush Labhsetwar, Marcelo C. R. Melo, John A. Cole, Zaida Luthey-Schulten:
Population FBA predicts metabolic phenotypes in yeast. PLoS Comput. Biol. 13(9) (2017) - 2015
- [j11]John A. Cole, Lars Kohler, Jamila Hedhli, Zaida Luthey-Schulten:
Spatially-resolved metabolic cooperativity within dense bacterial colonies. BMC Syst. Biol. 9: 15 (2015) - 2014
- [j10]Michael J. Hallock, John E. Stone, Elijah Roberts, Corey Fry, Zaida Luthey-Schulten:
Simulation of reaction diffusion processes over biologically relevant size and time scales using multi-GPU workstations. Parallel Comput. 40(5-6): 86-99 (2014) - 2013
- [j9]Elijah Roberts, John E. Stone, Zaida Luthey-Schulten:
Lattice microbes: High-performance stochastic simulation method for the reaction-diffusion master equation. J. Comput. Chem. 34(3): 245-255 (2013) - 2012
- [j8]John Eargle, Zaida Luthey-Schulten:
NetworkView: 3D display and analysis of protein·RNA interaction networks. Bioinform. 28(22): 3000-3001 (2012) - 2011
- [j7]Elijah Roberts, Andrew T. Magis, Julio O. Ortiz, Wolfgang Baumeister, Zaida Luthey-Schulten:
Noise Contributions in an Inducible Genetic Switch: A Whole-Cell Simulation Study. PLoS Comput. Biol. 7(3) (2011) - 2006
- [j6]John Eargle, Dan Wright, Zaida Luthey-Schulten:
Multiple Alignment of protein structures and sequences for VMD. Bioinform. 22(4): 504-506 (2006) - [j5]Elijah Roberts, John Eargle, Dan Wright, Zaida Luthey-Schulten:
MultiSeq: unifying sequence and structure data for evolutionary analysis. BMC Bioinform. 7: 382 (2006) - [j4]John Eargle, Zaida Luthey-Schulten:
Visualizing the dual space of biological molecules. Comput. Biol. Chem. 30(3): 219-226 (2006) - 2004
- [j3]Felix Autenrieth, Emad Tajkhorshid, Jérôme Baudry, Zaida Luthey-Schulten:
Classical force field parameters for the heme prosthetic group of cytochrome c. J. Comput. Chem. 25(13): 1613-1622 (2004) - 2002
- [j2]Corey Hardin, Michael P. Eastwood, Michael C. Prentiss, Zaida Luthey-Schulten, Peter G. Wolynes:
Folding funnels: The key to robust protein structure prediction. J. Comput. Chem. 23(1): 138-146 (2002) - 2001
- [j1]Michael P. Eastwood, Corey Hardin, Zaida Luthey-Schulten, Peter G. Wolynes:
Evaluating protein structure-prediction schemes using energy landscape theory. IBM J. Res. Dev. 45(3): 475-498 (2001)
Conference and Workshop Papers
- 2016
- [c4]John E. Stone, Michael J. Hallock, James C. Phillips, Joseph R. Peterson, Zaida Luthey-Schulten, Klaus Schulten:
Evaluation of Emerging Energy-Efficient Heterogeneous Computing Platforms for Biomolecular and Cellular Simulation Workloads. IPDPS Workshops 2016: 89-100 - [c3]Michael J. Hallock, Zaida Luthey-Schulten:
Improving Reaction Kernel Performance in Lattice Microbes: Particle-Wise Propensities and Run-Time Generated Code. IPDPS Workshops 2016: 428-434 - 2009
- [c2]Elijah Roberts, John E. Stone, Leonardo Sepulveda, Wen-mei W. Hwu, Zaida Luthey-Schulten:
Long time-scale simulations of in vivo diffusion using GPU hardware. IPDPS 2009: 1-8 - 1994
- [c1]Richard A. Goldstein, Zaida Luthey-Schulten, Peter G. Wolynes:
A Bayesian Approach to Sequence Alignment Algorithms for Protein Structure Recognition. HICSS (5) 1994: 306-315
Coauthor Index
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