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Journal Articles

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2022
[j12]
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Bogdan Toader, Jérôme Boulanger, Yury Korolev, Martin O. Lenz, James Manton, Carola-Bibiane Schönlieb, Leila Muresan:
Image Reconstruction in Light-Sheet Microscopy: Spatially Varying Deconvolution and Mixed Noise. J. Math. Imaging Vis. 64(9): 968-992 (2022)
2017
[j11]
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Antoine Basset, Patrick Bouthemy, Jérôme Boulanger, François Waharte, Jean Salamero, Charles Kervrann:
An extended model of vesicle fusion at the plasma membrane to estimate protein lateral diffusion from TIRF microscopy images. BMC Bioinform. 18(1): 352 (2017)
2016
[j10]
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Thierry Pécot, Charles Kervrann, Jean Salamero, Jérôme Boulanger:
Counting-Based Particle Flux Estimation for Traffic Analysis in Live Cell Imaging. IEEE J. Sel. Top. Signal Process. 10(1): 203-216 (2016)
2015
[j9]
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Antoine Basset, Jérôme Boulanger, Patrick Bouthemy, Charles Kervrann, Jean Salamero:
Détection de spots avec sélection d'échelle automatique et seuillage adaptatif en microscopie de fluorescence. Traitement du Signal 32(2-3): 287-310 (2015)
[j8]
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Thierry Pécot, Patrick Bouthemy, Jérôme Boulanger, Anatole Chessel, Sabine Bardin, Jean Salamero, Charles Kervrann:
Background Fluorescence Estimation and Vesicle Segmentation in Live Cell Imaging With Conditional Random Fields. IEEE Trans. Image Process. 24(2): 667-680 (2015)
[j7]
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Antoine Basset, Jérôme Boulanger, Jean Salamero, Patrick Bouthemy, Charles Kervrann:
Adaptive Spot Detection With Optimal Scale Selection in Fluorescence Microscopy Images. IEEE Trans. Image Process. 24(11): 4512-4527 (2015)
2011
[j6]
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Charles Kervrann, Jérôme Boulanger, Thierry Pécot, Patrick Pérez, Jean Salamero:
Multiscale NeighborhoodWise Decision Fusion for Redundancy Detection in Image Pairs. Multiscale Model. Simul. 9(4): 1829-1865 (2011)
2010
[j5]
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Jérôme Boulanger, Charles Kervrann, Patrick Bouthemy, Peter Elbau, Jean-Baptiste Sibarita, Jean Salamero:
Patch-Based Nonlocal Functional for Denoising Fluorescence Microscopy Image Sequences. IEEE Trans. Medical Imaging 29(2): 442-454 (2010)
2009
[j4]
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Jérôme Boulanger, Charles Kervrann, Patrick Bouthemy:
A simulation and estimation framework for intracellular dynamics and trafficking in video-microscopy and fluorescence imagery. Medical Image Anal. 13(1): 132-142 (2009)
2008
[j3]
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Charles Kervrann, Jérôme Boulanger:
Local Adaptivity to Variable Smoothness for Exemplar-Based Image Regularization and Representation. Int. J. Comput. Vis. 79(1): 45-69 (2008)
2007
[j2]
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Jérôme Boulanger, Charles Kervrann, Patrick Bouthemy:
Space-Time Adaptation for Patch-Based Image Sequence Restoration. IEEE Trans. Pattern Anal. Mach. Intell. 29(6): 1096-1102 (2007)
2006
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Charles Kervrann, Jérôme Boulanger:
Optimal Spatial Adaptation for Patch-Based Image Denoising. IEEE Trans. Image Process. 15(10): 2866-2878 (2006)

Conference and Workshop Papers

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2021
[c19]
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Suman Kumar Maji, Jérôme Boulanger:
A Variational Model For Poisson Gaussian Joint Denoising Deconvolution. ISBI 2021: 1527-1530
2020
[c18]
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  - conf/cvip/AetesamMB20
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Hazique Aetesam, Suman Kumar Maji, Jérôme Boulanger:
A Two-Phase Splitting Approach for the Removal of Gaussian-Impulse Noise from Hyperspectral Images. CVIP (1) 2020: 179-190
2016
[c17]
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Suman Kr. Maji, Catherine Dargemont, Jean Salamero, Jérôme Boulanger:
Joint denoising-deconvolution approach for fluorescence microscopy. ISBI 2016: 128-131
2015
[c16]
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Antoine Basset, Patrick Bouthemy, Jérôme Boulanger, François Waharte, Charles Kervrann, Jean Salamero:
Detection and estimation of membrane diffusion during exocytosis in TIRFM image sequences. ISBI 2015: 695-698
2014
[c15]
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Thierry Pécot, Jérôme Boulanger, Charles Kervrann, Patrick Bouthemy, Jean Salamero:
Estimation of the flow of particles within a partition of the image domain in fluorescence video-microscopy. ISBI 2014: 453-456
[c14]
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Antoine Basset, Jérôme Boulanger, Patrick Bouthemy, Charles Kervrann, Jean Salamero:
SLT-LoG: A vesicle segmentation method with automatic scale selection and local thresholding applied to TIRF microscopy. ISBI 2014: 533-536
[c13]
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  - conf/isbi/CondatBPSS14
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Laurent Condat, Jérôme Boulanger, Nelly Pustelnik, Souleymen Sahnoun, Lucie Sengmanivong:
A 2-D spectral analysis method to estimate the modulation parameters in structured illumination microscopy. ISBI 2014: 604-607
[c12]
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Antoine Basset, Patrick Bouthemy, Jérôme Boulanger, Jean Salamero, Charles Kervrann:
Localization and classification of membrane dynamics in TIRF microscopy image sequences. ISBI 2014: 830-833
[c11]
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Jérôme Boulanger, Nelly Pustelnik, Laurent Condat:
Non-smooth convex optimization for an efficient reconstruction in structured illumination microscopy. ISBI 2014: 995-998
2013
[c10]
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  - conf/isbi/RoudotKBW13
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Philippe Roudot, Charles Kervrann, Jérôme Boulanger, François Waharte:
Noise modeling for intensified camera in fluorescence imaging: Application to image denoising. ISBI 2013: 600-603
2012
[c9]
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Philippe Roudot, Charles Kervrann, François Waharte, Jérôme Boulanger:
Lifetime map reconstruction in frequency-domain fluorescence lifetime imaging microscopy. ICIP 2012: 2537-2540
2010
[c8]
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  - conf/isbi/ChesselCBBSK10
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Anatole Chessel, Bertrand Cinquin, Sabine Bardin, Jérôme Boulanger, Jean Salamero, Charles Kervrann:
A detection-based framework for the analysis of recycling in TIRF microscopy. ISBI 2010: 1281-1284
2008
[c7]
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Jérôme Boulanger, Jean-Baptiste Sibarita, Charles Kervrann, Patrick Bouthemy:
Non-parametric regression for patch-based fluorescence microscopy image sequence denoising. ISBI 2008: 748-751
2007
[c6]
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Thierry Pécot, Jérôme Boulanger, Charles Kervrann, Patrick Bouthemy:
Network Tomography for Trafficking Simulation and Analysis in Fluorescence Microscopy Imaging. ISBI 2007: 268-271
[c5]
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  - conf/scalespace/KervrannBC07
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Charles Kervrann, Jérôme Boulanger, Pierrick Coupé:
Bayesian Non-local Means Filter, Image Redundancy and Adaptive Dictionaries for Noise Removal. SSVM 2007: 520-532
2006
[c4]
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Charles Kervrann, Jérôme Boulanger:
Unsupervised Patch-Based Image Regularization and Representation. ECCV (4) 2006: 555-567
[c3]
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Jérôme Boulanger, Charles Kervrann, Patrick Bouthemy:
Estimation of Dynamic Background for Fluorescence Video-Microscopy. ICIP 2006: 2509-2512
2005
[c2]
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Jérôme Boulanger, Charles Kervrann, Patrick Bouthemy:
An adaptive statistical method for denoising 4D fluorescence image sequences with preservation of spatio-temporal discontinuities. ICIP (2) 2005: 145-148
[c1]
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Jérôme Boulanger, Charles Kervrann, Patrick Bouthemy:
Adaptive Spatio-Temporal Restoration for 4D Fluorescence Microscopic Imaging. MICCAI 2005: 893-901

Parts in Books or Collections

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2011
[p1]
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Jérôme Boulanger, Peter Elbau, Carsten Pontow, Otmar Scherzer:
Non-Local Functionals for Imaging. Fixed-Point Algorithms for Inverse Problems in Science and Engineering 2011: 131-154

Informal and Other Publications

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2021
[i1]
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  - journals/corr/abs-2108-03642
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Bogdan Toader, Jérôme Boulanger, Yury Korolev, Martin O. Lenz, James Manton, Carola-Bibiane Schönlieb, Leila Muresan:
Image reconstruction in light-sheet microscopy: spatially varying deconvolution and mixed noise. CoRR abs/2108.03642 (2021)

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