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2020 – today
- 2024
[j38]Tao Yue
, Si-Yi Chen, Wen-Kang Shen, Zhan-Ye Zhang, Liming Cheng, An-Yuan Guo:
TCRosetta: An Integrated Analysis and Annotation Platform for T-cell Receptor Sequences. Genom. Proteom. Bioinform. 22(4) (2024)- 2023
- [j37]Chun-Jie Liu, Fei-Fei Hu, Gui-Yan Xie, Ya-Ru Miao, Xin-Wen Li, Yan Zeng, An-Yuan Guo:
GSCA: an integrated platform for gene set cancer analysis at genomic, pharmacogenomic and immunogenomic levels. Briefings Bioinform. 24(1) (2023) - [j36]Wen-Kang Shen, Si-Yi Chen, Zi-Quan Gan, Yu-Zhu Zhang, Tao Yue, Miaomiao Chen, Yu Xue, Hui Hu, An-Yuan Guo:
AnimalTFDB 4.0: a comprehensive animal transcription factor database updated with variation and expression annotations. Nucleic Acids Res. 51(D1): 39-45 (2023) - [j35]Yanbo Yang, Dongyang Wang, Ya-Ru Miao, Xiaohong Wu, Haohui Luo, Wen Cao, Wenqian Yang, Jianye Yang, An-Yuan Guo, Jing Gong:
lncRNASNP v3: an updated database for functional variants in long non-coding RNAs. Nucleic Acids Res. 51(D1): 192-198 (2023) - 2022
- [j34]Gui-Yan Xie, Chun-Jie Liu, An-Yuan Guo:
EVAtool: an optimized reads assignment tool for small ncRNA quantification and its application in extracellular vesicle datasets. Briefings Bioinform. 23(5) (2022) - [j33]Ya-Ru Miao, Meng-Xuan Xia, Mei Luo, Tao Luo, Mei Yang, An-Yuan Guo:
ImmuCellAI-mouse: a tool for comprehensive prediction of mouse immune cell abundance and immune microenvironment depiction. Bioinform. 38(3): 785-791 (2022) - [j32]Chun-Jie Liu, Gui-Yan Xie, Ya-Ru Miao, Meng-Xuan Xia, Yi Wang, Qian Lei, Qiong Zhang, An-Yuan Guo:
EVAtlas: a comprehensive database for ncRNA expression in human extracellular vesicles. Nucleic Acids Res. 50(D1): 111-117 (2022) - 2021
- [j31]Fei-Fei Hu, Chun-Jie Liu, Lan-Lan Liu, Qiong Zhang, An-Yuan Guo:
Expression profile of immune checkpoint genes and their roles in predicting immunotherapy response. Briefings Bioinform. 22(3) (2021) - [j30]Qiong Zhang, Mei Luo, Chun-Jie Liu, An-Yuan Guo:
CCLA: an accurate method and web server for cancer cell line authentication using gene expression profiles. Briefings Bioinform. 22(3) (2021) - [j29]Hui Hu, Qiong Zhang, Fei-Fei Hu, Chun-Jie Liu, An-Yuan Guo:
A comprehensive survey for human transcription factors on expression, regulation, interaction, phenotype and cancer survival. Briefings Bioinform. 22(5) (2021) - [j28]Chun-Jie Liu, Xin Fu, Meng-Xuan Xia, Qiong Zhang, Zhifeng Gu, An-Yuan Guo:
miRNASNP-v3: a comprehensive database for SNPs and disease-related variations in miRNAs and miRNA targets. Nucleic Acids Res. 49(Database-Issue): D1276-D1281 (2021) - [j27]Yongbiao Xue, Yiming Bao, Zhang Zhang, Wenming Zhao, Jing-Fa Xiao, Shunmin He, Guoqing Zhang, Yixue Li, Guoping Zhao, Runsheng Chen, Shuhui Song, Lina Ma, Dong Zou, Dongmei Tian, Cuiping Li, Junwei Zhu, Zheng Gong, Meili Chen, Anke Wang, Yingke Ma, Mengwei Li, Xufei Teng, Ying Cui, Guangya Duan, Mochen Zhang, Tong Jin, Chengmin Shi, Zhenglin Du, Yadong Zhang, Chuandong Liu, Rujiao Li, Jingyao Zeng, Lili Hao, Shuai Jiang, Hua Chen, Dali Han, Tao Zhang, Wang Kang, Fei Yang, Jing Qu, Weiqi Zhang, Guanghui Liu, Lin Liu, Yang Zhang, Guangyi Niu, Tongtong Zhu, Changrui Feng, Xiaonan Liu, Yuansheng Zhang, Zhao Li, Ruru Chen, Qianpeng Li, Zhongyi Hua, Chao Jiang, Ziyuan Chen, Fangshu He, Yuyang Zhao, Yan Jin, Luqi Huang, Yuan Yuan, Chenfen Zhou, Qingwei Xu, Sheng He, Wei Ye, Ruifang Cao, Pengyu Wang, Yunchao Ling, Xing Yan, Qingzhong Wang, Qiang Du, Wenting Zong, Hongen Kang, Zhuang Xiong, Wendi Huan, Sirui Zhang, Qiguang Xia, Xiaojuan Fan, Zefeng Wang, Xu Chen, Tingting Chen, Sisi Zhang, Bixia Tang, Lili Dong, Zhewen Zhang, Zhonghuang Wang, Hailong Kang, Yanqing Wang, Song Wu, Ming Chen, Chang Liu, Yujia Xiong, Xueying Shao, Yanyan Li, Honghong Zhou, Xiaomin Chen, Yu Zheng, Quan Kang, Di Hao, Lili Zhang, Huaxia Luo, Yajing Hao, Peng Zhang, Zhi Nie, Shuhuan Yu, Jian Sang, Zhaohua Li, Xiangquan Zhang, Qing Zhou, Shuang Zhai, Yaping Zhang, Guodong Wang, Qianghui Zhu, Xin Li, Menghua Li, Jun Yan, Chen Li, Zhennan Wang, Xiangfeng Wang, Yuanming Liu, Hong Luo, Xiaoyuan Wu, Hai-Chun Jing, Lianhe Zhao, Jiajia Wang, Tinrui Song, Yi Zhao, Furrukh Mehmood, Shahid Ali, Amjad Ali, Shoaib Saleem, Irfan Hussain, Amir Ali Abbasi, Zhixiang Zuo, Jian Ren, Xinxin Zhang, Yun Xiao, Xia Li, Yiran Tu, Yu Xue, Wanying Wu, Peifeng Ji, Fangqing Zhao, Xianwen Meng, Di Peng, Hao Luo, Feng Gao, Wanshan Ning, Shaofeng Lin, Teng Liu, An-Yuan Guo, Hao Yuan, Yong E. Zhang, Xiaodan Tan, Weizhi Zhang, Yubin Xie, Chenwei Wang, Chun-Jie Liu, De-Chang Yang, Feng Tian, Ge Gao, Dachao Tang, Lan Yao, Qinghua Cui, Ni A. An, Chuan-Yun Li, Xiaotong Luo:
Database Resources of the National Genomics Data Center, China National Center for Bioinformation in 2021. Nucleic Acids Res. 49(Database-Issue): D18-D28 (2021) - [j26]Si-Yi Chen, Tao Yue, Qian Lei, An-Yuan Guo:
TCRdb: a comprehensive database for T-cell receptor sequences with powerful search function. Nucleic Acids Res. 49(Database-Issue): D468-D474 (2021) - 2020
- [j25]Yao Lv, Sheng-Yan Lin, Fei-Fei Hu, Zheng Ye, Qiong Zhang, Yan Wang, An-Yuan Guo:
Landscape of cancer diagnostic biomarkers from specifically expressed genes. Briefings Bioinform. 21(6): 2175-2184 (2020) - [j24]Gui-Yan Xie, Meng-Xuan Xia, Ya-Ru Miao, Mei Luo, Qiong Zhang, An-Yuan Guo:
FFLtool: a web server for transcription factor and miRNA feed forward loop analysis in human. Bioinform. 36(8): 2605-2607 (2020) - [j23]Si-Yi Chen, Chun-Jie Liu, Qiong Zhang, An-Yuan Guo:
An ultra-sensitive T-cell receptor detection method for TCR-Seq and RNA-Seq data. Bioinform. 36(15): 4255-4262 (2020) - [j22]Qiong Zhang, Wei Liu, Hong-Mei Zhang, Gui-Yan Xie, Ya-Ru Miao, Meng-Xuan Xia, An-Yuan Guo:
hTFtarget: A Comprehensive Database for Regulations of Human Transcription Factors and Their Targets. Genom. Proteom. Bioinform. 18(2): 120-128 (2020) - [j21]Yanbo Yang, Qiong Zhang, Ya-Ru Miao, Jiajun Yang, Wenqian Yang, Fangda Yu, Dongyang Wang, An-Yuan Guo, Jing Gong:
SNP2APA: a database for evaluating effects of genetic variants on alternative polyadenylation in human cancers. Nucleic Acids Res. 48(Database-Issue): D226-D232 (2020)
2010 – 2019
- 2019
- [j20]Qin Tang, Qiong Zhang, Yao Lv, Ya-Ru Miao, An-Yuan Guo:
SEGreg: a database for human specifically expressed genes and their regulations in cancer and normal tissue. Briefings Bioinform. 20(4): 1322-1328 (2019) - [j19]Qiong Zhang, Hui Hu, Si-Yi Chen, Chun-Jie Liu, Fei-Fei Hu, Jianming Yu, Yaohui Wu, An-Yuan Guo:
Transcriptome and Regulatory Network Analyses of CD19-CAR-T Immunotherapy for B-ALL. Genom. Proteom. Bioinform. 17(2): 190-200 (2019) - [j18]Jing Gong, Hao Wan, Shufang Mei, Hang Ruan, Zhao Zhang, Chun-Jie Liu, An-Yuan Guo, Lixia Diao, Xiaoping Miao, Leng Han:
Pancan-meQTL: a database to systematically evaluate the effects of genetic variants on methylation in human cancer. Nucleic Acids Res. 47(Database-Issue): D1066-D1072 (2019) - [j17]Hui Hu, Ya-Ru Miao, Long-Hao Jia, Qing-Yang Yu, Qiong Zhang, An-Yuan Guo:
AnimalTFDB 3.0: a comprehensive resource for annotation and prediction of animal transcription factors. Nucleic Acids Res. 47(Database-Issue): D33-D38 (2019) - [j16]Meng-Wei Shi, Na-An Zhang, Chuan-Ping Shi, Chun-Jie Liu, Zhi-Hui Luo, Dan-Yang Wang, An-Yuan Guo, Zhen-Xia Chen:
SAGD: a comprehensive sex-associated gene database from transcriptomes. Nucleic Acids Res. 47(Database-Issue): D835-D840 (2019) - [j15]Teng Liu, Qiong Zhang, Jiankun Zhang, Chao Li, Ya-Ru Miao, Qian Lei, Qiubai Li, An-Yuan Guo:
EVmiRNA: a database of miRNA profiling in extracellular vesicles. Nucleic Acids Res. 47(Database-Issue): D89-D93 (2019) - 2018
- [j14]Qiong Zhang, Wei Liu, Chun-Jie Liu, Sheng-Yan Lin, An-Yuan Guo:
SEGtool: a specifically expressed gene detection tool and applications in human tissue and single-cell sequencing data. Briefings Bioinform. 19(6): 1325-1336 (2018) - [j13]Chun-Jie Liu, Fei-Fei Hu, Meng-Xuan Xia, Leng Han, Qiong Zhang, An-Yuan Guo:
GSCALite: a web server for gene set cancer analysis. Bioinform. 34(21): 3771-3772 (2018) - [j12]Ya-Ru Miao, Wei Liu, Qiong Zhang, An-Yuan Guo:
lncRNASNP2: an updated database of functional SNPs and mutations in human and mouse lncRNAs. Nucleic Acids Res. 46(Database-Issue): D276-D280 (2018) - [j11]Jing Gong, Shufang Mei, Chun-Jie Liu, Yu Xiang, Youqiong Ye, Zhao Zhang, Jing Feng, Renyan Liu, Lixia Diao, An-Yuan Guo, Xiaoping Miao, Leng Han:
PancanQTL: systematic identification of cis-eQTLs and trans-eQTLs in 33 cancer types. Nucleic Acids Res. 46(Database-Issue): D971-D976 (2018) - 2017
- [j10]Jing Gong, Chun-Jie Liu, Wei Liu, Yu Xiang, Lixia Diao, An-Yuan Guo, Leng Han:
LNCediting: a database for functional effects of RNA editing in lncRNAs. Nucleic Acids Res. 45(Database-Issue): D79-D84 (2017) - 2015
- [j9]Hong-Mei Zhang, Shuzhen Kuang, Xushen Xiong, Tianliuyun Gao, Chenglin Liu, An-Yuan Guo:
Transcription factor and microRNA co-regulatory loops: important regulatory motifs in biological processes and diseases. Briefings Bioinform. 16(1): 45-58 (2015) - [j8]Jing Gong, Chun-Jie Liu, Wei Liu, Yuliang Wu, Zhaowu Ma, Hu Chen, An-Yuan Guo:
An update of miRNASNP database for better SNP selection by GWAS data, miRNA expression and online tools. Database J. Biol. Databases Curation 2015 (2015) - [j7]Hong-Mei Zhang, Teng Liu, Chun-Jie Liu, Shuangyang Song, Xiantong Zhang, Wei Liu, Haibo Jia, Yu Xue, An-Yuan Guo:
AnimalTFDB 2.0: a resource for expression, prediction and functional study of animal transcription factors. Nucleic Acids Res. 43(Database-Issue): 76-81 (2015) - [j6]Jing Gong, Wei Liu, Jiayou Zhang, Xiaoping Miao, An-Yuan Guo:
lncRNASNP: a database of SNPs in lncRNAs and their potential functions in human and mouse. Nucleic Acids Res. 43(Database-Issue): 181-186 (2015) - 2012
- [j5]Jing Gong, Yin Tong, Hong-Mei Zhang, An-Yuan Guo:
miRNASNP: a database of miRNA related SNPs and their effects on miRNA function. BMC Bioinform. 13(S-18): A2 (2012) - [j4]Hong-Mei Zhang, Hu Chen, Wei Liu, Hui Liu, Jing Gong, Huili Wang, An-Yuan Guo:
AnimalTFDB: a comprehensive animal transcription factor database. Nucleic Acids Res. 40(Database-Issue): 144-149 (2012) - 2011
- [j3]Hui Liu, Wei Liu, Yifang Liao, Long Cheng, Qian Liu, Xiang Ren, Lisong Shi, Xin Tu, Qing Kenneth Wang, An-Yuan Guo:
CADgene: a comprehensive database for coronary artery disease genes. Nucleic Acids Res. 39(Database-Issue): 991-996 (2011) - 2010
- [j2]An-Yuan Guo, Jingchun Sun, Peilin Jia, Zhongming Zhao:
A Novel microRNA and transcription factor mediated regulatory network in schizophrenia. BMC Syst. Biol. 4: 10 (2010)
2000 – 2009
- 2009
- [j1]An-Yuan Guo, Bradley Todd Webb, Michael F. Miles, Mark P. Zimmerman, Kenneth S. Kendler, Zhongming Zhao:
ERGR: An ethanol-related gene resource. Nucleic Acids Res. 37(Database-Issue): 840-845 (2009)
Coauthor Index
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