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ORCIDYadong Wang 0001
Person information
- affiliation: Harbin Institute of Technology, Harbin, Heilongjiang, China
Other persons with the same name
- Yadong Wang — disambiguation page
- Yadong Wang 0002
![[0000-0003-1551-1826]](https://dblp.uni-trier.de./img/orcid-mark.12x12.png "0000-0003-1551-1826")
— Army Engineering University, Shijiazhuang, Hebei, China - Yadong Wang 0003 — Huazhong University of Science and Technology, Wuhan, China
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Journal Articles
- 2024
[j79]Miao Cui, Yadong Liu, Xian Yu, Hongzhe Guo, Tao Jiang, Yadong Wang, Bo Liu:
miniSNV: accurate and fast single nucleotide variant calling from nanopore sequencing data. Briefings Bioinform. 25(6) (2024)- [j78]Yue Liu, Yuhuan Zhou, Xiumei Hu, Wuri Le-Ge, Haoyan Wang, Tao Jiang, Junyi Li, Yang Hu, Yadong Wang:
DIRMC: a database of immunotherapy-related molecular characteristics. Database J. Biol. Databases Curation 2024 (2024) - [j77]Dong Wang, Jie Li, Edwin Wang, Yadong Wang:
DVA: predicting the functional impact of single nucleotide missense variants. BMC Bioinform. 25(1): 100 (2024) - [j76]Hongzhe Guo, Liyuan Zhang, Xinran Cui, Liang Cheng, Tianyi Zhao, Yadong Wang:
SCancerRNA: Expression at the Single-cell Level and Interaction Resource of Non-coding RNA Biomarkers for Cancers. Genom. Proteom. Bioinform. 22(3) (2024) - [j75]Zhiyuan Liu, David Z. W. Wang, Yu Jiang, Nirajan Shiwakoti, Yadong Wang:
Special Issue on Methods and Applications for Large-Scale Intelligent Transportation Systems [Guest Editorial]. IEEE Intell. Transp. Syst. Mag. 16(3): 6-8 (2024) - 2023
- [j74]Peishun Jiao, Beibei Wang, Xuan Wang, Bo Liu, Yadong Wang, Junyi Li:
Struct2GO: protein function prediction based on graph pooling algorithm and AlphaFold2 structure information. Bioinform. 39(10) (2023) - [j73]Kaitao Wu, Lexiang Wang, Bo Liu, Yang Liu, Yadong Wang, Junyi Li:
PSPGO: Cross-Species Heterogeneous Network Propagation for Protein Function Prediction. IEEE ACM Trans. Comput. Biol. Bioinform. 20(3): 1713-1724 (2023) - [j72]Linlin Du, Rui Han, Bo Liu, Yadong Wang, Junyi Li:
ScCCL: Single-Cell Data Clustering Based on Self-Supervised Contrastive Learning. IEEE ACM Trans. Comput. Biol. Bioinform. 20(3): 2233-2241 (2023) - [j71]Xiaoshuai Zhang, Lixin Wang, Hucheng Liu, Xiaofeng Zhang, Bo Liu, Yadong Wang, Junyi Li:
Prot2GO: Predicting GO Annotations From Protein Sequences and Interactions. IEEE ACM Trans. Comput. Biol. Bioinform. 20(5): 2772-2780 (2023) - [j70]Shiming Wang, Jie Li, Dong Wang, Dechen Xu, Jiahuan Jin, Yadong Wang:
Predicting Drug-Disease Associations Through Similarity Network Fusion and Multi-View Feature Projection Representation. IEEE J. Biomed. Health Informatics 27(10): 5165-5176 (2023) - [j69]Qiqi Gao, Jie Li, Tiejun Zhao, Yadong Wang:
Real-time Image Enhancement with Attention Aggregation. ACM Trans. Multim. Comput. Commun. Appl. 19(2s): 98:1-98:19 (2023) - 2022
- [j68]Tao Wang, Yongzhuang Liu, Quanwei Yin, Jiaquan Geng, Jin Chen, Xipeng Yin, Yongtian Wang, Xuequn Shang, Chunwei Tian, Yadong Wang, Jiajie Peng:
Enhancing discoveries of molecular QTL studies with small sample size using summary statistic imputation. Briefings Bioinform. 23(1) (2022) - [j67]Tao Wang, Yongzhuang Liu, Quanwei Yin, Jiaquan Geng, Jin Chen, Xipeng Yin, Yongtian Wang, Xuequn Shang, Chunwei Tian, Yadong Wang, Jiajie Peng:
Correction to: Enhancing discoveries of molecular QTL studies with small sample size using summary statistic imputation. Briefings Bioinform. 23(3) (2022) - [j66]Shiming Wang, Jie Li, Yadong Wang:
M2PP: a novel computational model for predicting drug-targeted pathogenic proteins. BMC Bioinform. 23(1): 7 (2022) - [j65]Hongzhe Guo, Zhongbo Yang, Tao Jiang, Shiqi Liu, Yadong Wang, Zhe Cui:
Evaluation of classification in single cell atac-seq data with machine learning methods. BMC Bioinform. 23-S(5): 249 (2022) - [j64]Lexiang Wang, Mingxiao Wu, Yulin Wu, Xiaofeng Zhang, Sen Li, Ming He, Fan Zhang, Yadong Wang, Junyi Li:
Prediction of the disease causal genes based on heterogeneous network and multi-feature combination method. Comput. Biol. Chem. 97: 107639 (2022) - [j63]Zhongqing Zhang, Qiqi Jiao, Yang Zhang, Bo Liu, Yadong Wang, Junyi Li:
OTUCD: Unsupervised GCN based metagenomics non-overlapping community detection. Comput. Biol. Chem. 98: 107670 (2022) - [j62]Shiming Wang, Jie Li, Yadong Wang, Liran Juan:
A Neighborhood-Based Global Network Model to Predict Drug-Target Interactions. IEEE ACM Trans. Comput. Biol. Bioinform. 19(4): 2017-2025 (2022) - [j61]Xiao Ye, Yulin Wu, Jiangsheng Pi, Hong Li, Bo Liu, Yadong Wang, Junyi Li:
Deepgmd: A Graph-Neural-Network-Based Method to Detect Gene Regulator Module. IEEE ACM Trans. Comput. Biol. Bioinform. 19(6): 3366-3373 (2022) - 2021
- [j60]Yongzhuang Liu, Yalin Huang, Guohua Wang, Yadong Wang:
A deep learning approach for filtering structural variants in short read sequencing data. Briefings Bioinform. 22(4) (2021) - [j59]Yongzhuang Liu, Xiaoliang Wu, Yadong Wang:
An integrated approach for copy number variation discovery in parent-offspring trios. Briefings Bioinform. 22(6) (2021) - [j58]Yan Gao, Yongzhuang Liu, Yanmei Ma, Bo Liu, Yadong Wang, Yi Xing:
abPOA: an SIMD-based C library for fast partial order alignment using adaptive band. Bioinform. 37(15): 2209-2211 (2021) - [j57]Yan Gao, Yongzhuang Liu, Yanmei Ma, Bo Liu, Yadong Wang, Yi Xing:
Erratum to: abPOA: an SIMD-based C library for fast partial order alignment using adaptive band. Bioinform. 37(19): 3384 (2021) - [j56]Yadong Liu, Tao Jiang, Junhao Su, Bo Liu, Tianyi Zang, Yadong Wang:
SKSV: ultrafast structural variation detection from circular consensus sequencing reads. Bioinform. 37(20): 3647-3649 (2021) - [j55]Ming He, Chen Huang, Bo Liu, Yadong Wang, Junyi Li:
Factor graph-aggregated heterogeneous network embedding for disease-gene association prediction. BMC Bioinform. 22(1): 165 (2021) - [j54]Tao Jiang, Shiqi Liu, Shuqi Cao, Yadong Liu, Zhe Cui, Yadong Wang, Hongzhe Guo:
Long-read sequencing settings for efficient structural variation detection based on comprehensive evaluation. BMC Bioinform. 22(1): 552 (2021) - [j53]Junyi Li, Huinian Li, Xiao Ye, Li Zhang, Qingzhe Xu, Yuan Ping, Xiaozhu Jing, Wei Jiang, Qing Liao, Bo Liu, Yadong Wang:
IIMLP: integrated information-entropy-based method for LncRNA prediction. BMC Bioinform. 22-S(3): 243 (2021) - [j52]Wei Quan, Bo Liu, Yadong Wang:
Fast and SNP-aware short read alignment with SALT. BMC Bioinform. 22-S(9): 172 (2021) - [j51]Tao Wang, Yongzhuang Liu, Junpeng Ruan, Xianjun Dong, Yadong Wang, Jiajie Peng:
A pipeline for RNA-seq based eQTL analysis with automated quality control procedures. BMC Bioinform. 22-S(9): 403 (2021) - [j50]Junyi Li, Wei Jiang, Henry Han, Jing Liu, Bo Liu, Yadong Wang:
ScGSLC: An unsupervised graph similarity learning framework for single-cell RNA-seq data clustering. Comput. Biol. Chem. 90: 107415 (2021) - [j49]Hongzhe Guo, Yilei Fu, Yan Gao, Junyi Li, Yadong Wang, Bo Liu:
deGSM: Memory Scalable Construction Of Large Scale de Bruijn Graph. IEEE ACM Trans. Comput. Biol. Bioinform. 18(6): 2157-2166 (2021) - [j48]Shiming Wang, Jie Li, Yadong Wang:
WMMDCA: Prediction of Drug Responses by Weight-Based Modular Mapping in Cancer Cell Lines. IEEE ACM Trans. Comput. Biol. Bioinform. 18(6): 2733-2740 (2021) - 2020
- [j47]Yongzhuang Liu, Jian Liu, Yadong Wang:
Filtering de novo indels in parent-offspring trios. BMC Bioinform. 21-S(16): 547 (2020) - [j46]Junyi Li, Yuan Ping, Hong Li, Huinian Li, Ying Liu, Bo Liu, Yadong Wang:
Prognostic prediction of carcinoma by a differential-regulatory-network-embedded deep neural network. Comput. Biol. Chem. 88: 107317 (2020) - [j45]Jiajie Peng, Linjiao Zhu, Yadong Wang, Jin Chen:
Mining Relationships among Multiple Entities in Biological Networks. IEEE ACM Trans. Comput. Biol. Bioinform. 17(3): 769-776 (2020) - 2019
- [j44]Ling Wang, Xiaohang Wang, Yadong Wang:
An Approximate Bufferless Network-on-Chip. IEEE Access 7: 141516-141532 (2019) - [j43]Yan Gao, Bo Liu, Yadong Wang, Yi Xing:
TideHunter: efficient and sensitive tandem repeat detection from noisy long-reads using seed-and-chain. Bioinform. 35(14): i200-i207 (2019) - [j42]Tao Jiang, Bo Liu, Junyi Li, Yadong Wang:
rMETL: sensitive mobile element insertion detection with long read realignment. Bioinform. 35(18): 3484-3486 (2019) - [j41]Yongzhuang Liu, Jian Liu, Yadong Wang:
Joint detection of germline and somatic copy number events in matched tumor-normal sample pairs. Bioinform. 35(23): 4955-4961 (2019) - [j40]Junyi Li, Li Zhang, Huinian Li, Yuan Ping, Qingzhe Xu, Rongjie Wang, Renjie Tan, Zhen Wang, Bo Liu, Yadong Wang:
Integrated entropy-based approach for analyzing exons and introns in DNA sequences. BMC Bioinform. 20-S(8): 283:1-283:7 (2019) - [j39]Yongtian Wang, Liran Juan, Jiajie Peng, Tianyi Zang, Yadong Wang:
LncDisAP: a computation model for LncRNA-disease association prediction based on multiple biological datasets. BMC Bioinform. 20-S(16): 582:1-582:11 (2019) - [j38]Yongtian Wang, Liran Juan, Jiajie Peng, Tianyi Zang, Yadong Wang:
Prioritizing candidate diseases-related metabolites based on literature and functional similarity. BMC Bioinform. 20-S(18): 574:1-574:11 (2019) - [j37]Yan-Shuo Chu, Mingxiang Teng, Yadong Wang:
Simulating genetically heterozygous genomes in the tumour tissue according to its clonal evolution history. Int. J. Comput. Biol. Drug Des. 12(2): 143-152 (2019) - [j36]Hongzhe Guo, Bo Liu, Dengfeng Guan, Yilei Fu, Yadong Wang:
Fast read alignment with incorporation of known genomic variants. BMC Medical Informatics Decis. Mak. 19-S(6): 265 (2019) - 2018
- [j35]Yan-Shuo Chu, Mingxiang Teng, Yadong Wang:
Modeling and correct the GC bias of tumor and normal WGS data for SCNA based tumor subclonal population inferring. BMC Bioinform. 19-S(5): 79-87 (2018) - 2017
- [j34]Bo Liu, Yan Gao, Yadong Wang:
LAMSA: fast split read alignment with long approximate matches. Bioinform. 33(2): 192-201 (2017) - [j33]Bo Liu, Tao Jiang, Siu-Ming Yiu, Junyi Li, Yadong Wang:
rMFilter: acceleration of long read-based structure variation calling by chimeric read filtering. Bioinform. 33(17): 2750-2752 (2017) - [j32]Yang Hu, Lingling Zhao, Zhiyan Liu, Hong Ju, Hongbo Shi, Peigang Xu, Yadong Wang, Liang Cheng:
DisSetSim: an online system for calculating similarity between disease sets. J. Biomed. Semant. 8-S(1): 19-25 (2017) - [j31]Zhuo Wang, Shuilin Jin, Guiyou Liu, Xiurui Zhang, Nan Wang, Deliang Wu, Yang Hu, Chiping Zhang, Qinghua Jiang, Li Xu, Yadong Wang:
DTWscore: differential expression and cell clustering analysis for time-series single-cell RNA-seq data. BMC Bioinform. 18(1): 270:1-270:14 (2017) - [j30]Jiajie Peng, Honggang Wang, Junya Lu, Weiwei Hui, Yadong Wang, Xuequn Shang:
Identifying term relations cross different gene ontology categories. BMC Bioinform. 18(16): 67-74 (2017) - [j29]Jiajie Peng, Hansheng Xue, Yukai Shao, Xuequn Shang, Yadong Wang, Jin Chen:
A novel method to measure the semantic similarity of HPO terms. Int. J. Data Min. Bioinform. 17(2): 173-188 (2017) - [j28]Haobin Yao, Tak Wah Lam, H. F. Ting, Siu-Ming Yiu, Yadong Wang, Bo Liu:
Accurate annotation of metagenomic data without species-level references. Int. J. Data Min. Bioinform. 19(4): 283-297 (2017) - [j27]Yan-Shuo Chu, Zhenxing Wang, Rongjie Wang, Ningyi Zhang, Jie Li, Yang Hu, Mingxiang Teng, Yadong Wang:
WDNfinder: A method for minimum driver node set detection and analysis in directed and weighted biological network. J. Bioinform. Comput. Biol. 15(5): 1750021:1-1750021:18 (2017) - 2016
- [j26]Yongzhuang Liu, Jian Liu, Jianguo Lu, Jiajie Peng, Liran Juan, Xiaolin Zhu, Bingshan Li, Yadong Wang:
Joint detection of copy number variations in parent-offspring trios. Bioinform. 32(8): 1130-1137 (2016) - [j25]Jiajie Peng, Tao Wang, Jixuan Wang, Yadong Wang, Jin Chen:
Extending gene ontology with gene association networks. Bioinform. 32(8): 1185-1194 (2016) - [j24]Bo Liu, Dengfeng Guan, Mingxiang Teng, Yadong Wang:
rHAT: fast alignment of noisy long reads with regional hashing. Bioinform. 32(11): 1625-1631 (2016) - [j23]Bo Liu, Dixian Zhu, Yadong Wang:
deBWT: parallel construction of Burrows-Wheeler Transform for large collection of genomes with de Bruijn-branch encoding. Bioinform. 32(12): 174-182 (2016) - [j22]Bo Liu, Hongzhe Guo, Michael Brudno, Yadong Wang:
deBGA: read alignment with de Bruijn graph-based seed and extension. Bioinform. 32(21): 3224-3232 (2016) - [j21]Qiaosheng Zhang, Jie Li, Haozhe Xie, Hanqing Xue, Yadong Wang:
A network-based pathway-expanding approach for pathway analysis. BMC Bioinform. 17(S-17): 231-241 (2016) - [j20]Haozhe Xie, Jie Li, Qiaosheng Zhang, Yadong Wang:
Comparison among dimensionality reduction techniques based on Random Projection for cancer classification. Comput. Biol. Chem. 65: 165-172 (2016) - 2015
- [j19]Liran Juan, Yongzhuang Liu, Yongtian Wang, Mingxiang Teng, Tianyi Zang, Yadong Wang:
Family genome browser: visualizing genomes with pedigree information. Bioinform. 31(14): 2262-2268 (2015) - [j18]Jiajie Peng, Sahra Uygun, Taehyong Kim, Yadong Wang, Seung Y. Rhee, Jin Chen:
Measuring semantic similarities by combining gene ontology annotations and gene co-function networks. BMC Bioinform. 16: 44:1-44:14 (2015) - [j17]Xiao Zhu, Henry C. M. Leung, Rongjie Wang, Francis Y. L. Chin, Siu-Ming Yiu, Guangri Quan, Yajie Li, Rui Zhang, Qinghua Jiang, Bo Liu, Yucui Dong, Guohui Zhou, Yadong Wang:
misFinder: identify mis-assemblies in an unbiased manner using reference and paired-end reads. BMC Bioinform. 16: 386:1-386:16 (2015) - [j16]Qing Zhan, Yongtao Ye, Tak Wah Lam, Siu-Ming Yiu, Yadong Wang, Hing-Fung Ting:
Improving multiple sequence alignment by using better guide trees. BMC Bioinform. 16(S-5): S4 (2015) - [j15]Qinghua Jiang, Jixuan Wang, Xiaoliang Wu, Rui Ma, Tianjiao Zhang, Shuilin Jin, Zhijie Han, Renjie Tan, Jiajie Peng, Guiyou Liu, Yu Li, Yadong Wang:
LncRNA2Target: a database for differentially expressed genes after lncRNA knockdown or overexpression. Nucleic Acids Res. 43(Database-Issue): 193-196 (2015) - [j14]Yongtao Ye, David Wai-Lok Cheung, Yadong Wang, Siu-Ming Yiu, Qing Zhan, Tak Wah Lam, Hing-Fung Ting:
GLProbs: Aligning Multiple Sequences Adaptively. IEEE ACM Trans. Comput. Biol. Bioinform. 12(1): 67-78 (2015) - [j13]Liang Cheng, Jie Li, Yang Hu, Yue Jiang, Yongzhuang Liu, Yan-Shuo Chu, Zhenxing Wang, Yadong Wang:
Using Semantic Association to Extend and Infer Literature-Oriented Relativity Between Terms. IEEE ACM Trans. Comput. Biol. Bioinform. 12(6): 1219-1226 (2015) - 2014
- [j12]Yongzhuang Liu, Bingshan Li, Renjie Tan, Xiaolin Zhu, Yadong Wang:
A gradient-boosting approach for filtering de novo mutations in parent-offspring trios. Bioinform. 30(13): 1830-1836 (2014) - [j11]Jiajie Peng, Yadong Wang, Jin Chen:
Towards integrative gene functional similarity measurement. BMC Bioinform. 15(S-2): S5 (2014) - [j10]Jiajie Peng, Hongxiang Li, Qinghua Jiang, Yadong Wang, Jin Chen:
An integrative approach for measuring semantic similarities using gene ontology. BMC Syst. Biol. 8(S-5): S8 (2014) - [j9]Liran Juan, Mingxiang Teng, Tianyi Zang, Yafeng Hao, Zhenxing Wang, Chengwu Yan, Yongzhuang Liu, Jie Li, Tianjiao Zhang, Yadong Wang:
The personal genome browser: visualizing functions of genetic variants. Nucleic Acids Res. 42(Webserver-Issue): 192-197 (2014) - 2013
- [j8]Jiajie Peng, Jin Chen, Yadong Wang:
Identifying cross-category relations in gene ontology and constructing genome-specific term association networks. BMC Bioinform. 14(S-2): S15 (2013) - 2012
- [j7]Mingxiang Teng, Shoji Ichikawa, Leah R. Padgett, Yadong Wang, Matthew E. Mort, David N. Cooper, Daniel L. Koller, Tatiana Foroud, Howard J. Edenberg, Michael J. Econs, Yunlong Liu:
regSNPs: a strategy for prioritizing regulatory single nucleotide substitutions. Bioinform. 28(14): 1879-1886 (2012) - [j6]Yue Jiang, Yadong Wang, Michael Brudno:
PRISM: Pair-read informed split-read mapping for base-pair level detection of insertion, deletion and structural variants. Bioinform. 28(20): 2576-2583 (2012) - [j5]Peigang Xu, Yadong Wang, Bo Liu:
A differentor-based adaptive ontology-matching approach. J. Inf. Sci. 38(5): 459-475 (2012) - 2011
- [j4]Changyu Shen, Yi-Wen Huang, Yunlong Liu, Guohua Wang, Yuming Zhao, Zhiping Wang, Mingxiang Teng, Yadong Wang, David A. Flockhart, Todd C. Skaar, Pearlly Yan, Kenneth P. Nephew, Tim Hui-Ming Huang, Lang Li:
A modulated empirical Bayes model for identifying topological and temporal estrogen receptor α regulatory networks in breast cancer. BMC Syst. Biol. 5: 67 (2011) - 2010
- [j3]Qinghua Jiang, Yangyang Hao, Guohua Wang, Liran Juan, Tianjiao Zhang, Mingxiang Teng, Yunlong Liu, Yadong Wang:
Prioritization of disease microRNAs through a human phenome-microRNAome network. BMC Syst. Biol. 4(S-1): S2 (2010) - 2009
- [j2]Qinghua Jiang, Yadong Wang, Yangyang Hao, Liran Juan, Mingxiang Teng, Xinjun Zhang, Meimei Li, Guohua Wang, Yunlong Liu:
miR2Disease: a manually curated database for microRNA deregulation in human disease. Nucleic Acids Res. 37(Database-Issue): 98-104 (2009) - 2008
- [j1]Wei Jiang, Xia Li, Shaoqi Rao, Lihong Wang, Lei Du, Chuanxing Li, Chao Wu, Hongzhi Wang, Yadong Wang, Baofeng Yang:
Constructing disease-specific gene networks using pair-wise relevance metric: Application to colon cancer identifies interleukin 8, desmin and enolase 1 as the central elements. BMC Syst. Biol. 2: 72 (2008)
Conference and Workshop Papers
- 2023
- [c39]Yadong Liu, Hongzhe Guo, Zhenhao Lu, Yadong Wang, Zhongyu Liu, Tao Jiang:
Comprehensive evaluation of RNA-seq alignment methods based on long-read sequencing data. BIBM 2023: 339-342 - [c38]Shizheng Qiu, Yadong Wang, Ying Zhang, Yang Hu:
Identification of risk genes and biological pathways influencing myopia via transcriptome association study and biomedical ontology methods. BIBM 2023: 2926-2931 - 2022
- [c37]Yadong Liu, Zhongyu Liu, Tao Jiang, Tianyi Zang, Yadong Wang:
Comparison of the Nanopore and PacBio sequencing technologies for DNA 5-methylcytosine detection. BIBM 2022: 220-225 - [c36]Qiqi Jiao, Yu Jiang, Yang Zhang, Yadong Wang, Junyi Li:
NSAP: A Neighborhood Subgraph Aggregation Method for Drug-Disease Association Prediction. ICIC (2) 2022: 79-91 - 2021
- [c35]Yue Liu, Shizheng Qiu, Yang Hu, Yadong Wang:
Differentially Expressed Mutant Genes Reveal Potential Prognostic Markers For Lung Adenocarcinoma. BIBM 2021: 1856-1864 - [c34]Zhendong Zhang, Yongzhuang Liu, Gaoyang Li, Yadong Wang:
PocaCNV: A Tool to Detect Copy Number Variants from Population-Scale Genome Sequencing Data. BIBM 2021: 1912-1918 - [c33]Naile Shi, Yulin Wu, Linlin Du, Bo Liu, Yadong Wang, Junyi Li:
ScSSC: Semi-supervised Single Cell Clustering Based on 2D Embedding. ICIC (3) 2021: 478-489 - 2020
- [c32]Junyi Li, Lixin Wang, Xiaoshuai Zhang, Bo Liu, Yadong Wang:
GONET: A Deep Network to Annotate Proteins via Recurrent Convolution Networks. BIBM 2020: 29-34 - [c31]Zhe Cui, Bo Liu, Liran Juan, Tianyi Zang, Tao Jiang, Yadong Wang:
Assessment of Machine Learning Methods for Classification in Single Cell ATAC-seq. BIBM 2020: 412-416 - [c30]Ling Wang, Yadong Wang, Xiaohang Wang:
An Approximate Multiplane Network-on-Chip. DATE 2020: 234-239 - [c29]Xiaozhu Jing, Wei Jiang, Zhongqing Zhang, Yadong Wang, Junyi Li:
HGAlinker: Drug-Disease Association Prediction Based on Attention Mechanism of Heterogeneous Graph. ICIC (2) 2020: 384-396 - 2019
- [c28]Wei Quan, Guangri Quan, Bo Liu, Yadong Wang:
A Bidirectional Fuzzy Index and Approximate Search Algorithm for Next Generation Sequencing. BIBM 2019: 293-297 - [c27]Jie Li, Zhun Zhao, Li Zhou, Yadong Wang:
Y-SPCR: A new dimensionality reduction method for gene expression data classification. BIBM 2019: 401-408 - [c26]Yongzhuang Liu, Jian Liu, Yadong Wang:
DNMFilter_Indel: Filtering de novo Indels in Parent-Offspring Trios. BIBM 2019: 1758-1761 - [c25]Wei Quan, Bo Liu, Yadong Wang:
SALT: a fast, memory-efficient and SNP-aware short read alignment tool. BIBM 2019: 1774-1779 - [c24]Tao Wang, Junpeng Ruan, Quanwei Yin, Xianjun Dong, Yadong Wang:
An automated quality control pipeline for eQTL analysis with RNA-seq data. BIBM 2019: 1780-1786 - [c23]Junyi Li, Huinian Li, Li Zhang, Qingzhe Xu, Yuan Ping, Xiaozhu Jing, Wei Jiang, Bo Liu, Yadong Wang:
Prediction of Human LncRNAs Based on Integrated Information Entropy Features. ICIC (2) 2019: 333-343 - 2018
- [c22]Tao Wang, Jiajie Peng, Yadong Wang, Jin Chen:
Identifying Representative Network Motifs for Inferring Higher-order Structure of Biological Networks. BIBM 2018: 149-156 - [c21]Yilei Fu, Tao Jiang, Bo Liu, Yadong Wang:
rCANID: read Clustering and Assembly-based Novel Insertion Detection tool. BIBM 2018: 219-226 - [c20]Hongzhe Guo, Bo Liu, Dengfeng Guan, Yilei Fu, Yadong Wang:
Fast variation-aware read alignment with deBGA-VARA. BIBM 2018: 227-233 - [c19]Dengfeng Guan, Bo Liu, Yadong Wang:
deSPI: efficient classification of metagenomics reads with lightweight de Bruijn graph-based reference indexing. BIBM 2018: 265-269 - [c18]Rongjie Wang, Yang Bai, Yan-Shuo Chu, Zhenxing Wang, Yongtian Wang, Mingrui Sun, Junyi Li, Tianyi Zang, Yadong Wang:
DeepDNA: a hybrid convolutional and recurrent neural network for compressing human mitochondrial genomes. BIBM 2018: 270-274 - [c17]Yongtian Wang, Liran Juan, Jiajie Peng, Tianyi Zang, Yadong Wang:
Predicting candidate disease-related lncRNAs based on network random walk. BIBM 2018: 524-531 - [c16]Ling Wang, Yadong Wang:
A Network-on-Chip Accelerator for Genome Variant Analysis. BIBM 2018: 775-779 - 2017
- [c15]Yan-Shuo Chu, Mingxiang Teng, Zhenxing Wang, Yongtian Wang, Yadong Wang:
Pre-SCNAClonal: Efficient GC bias correction for SCNA based tumor subclonal populations inferring. BIBM 2017: 262-265 - [c14]Yan-Shuo Chu, Ling Wang, Rongjie Wang, Mingxiang Teng, Yadong Wang:
Pysubsim-tree: A package for simulating tumor genomes according to tumor evolution history. BIBM 2017: 2195-2197 - [c13]Ling Wang, Xiaohang Wang, Yadong Wang:
ABDTR: Approximation-Based Dynamic Traffic Regulation for Networks-on-Chip Systems. ICCD 2017: 153-160 - 2016
- [c12]Haobin Yao, Tak Wah Lam, Hing-Fung Ting, Siu-Ming Yiu, Yadong Wang, Bo Liu:
Accurate annotation of metagenomic data without species-level references. BIBM 2016: 59-64 - [c11]Renjie Tan, Jixuan Wang, Xiaoliang Wu, Guoqiang Wan, Rongjie Wang, Rui Ma, Zhijie Han, Wenyang Zhou, Shuilin Jin, Qinghua Jiang, Yadong Wang:
ERDS-pe: A paired hidden Markov model for copy number variant detection from whole-exome sequencing data. BIBM 2016: 141-144 - [c10]Jiajie Peng, Hansheng Xue, Yukai Shao, Xuequn Shang, Yadong Wang, Jin Chen:
Measuring phenotype semantic similarity using Human Phenotype Ontology. BIBM 2016: 763-766 - [c9]Rongjie Wang, Mingxiang Teng, Yang Bai, Tianyi Zang, Yadong Wang:
DMcompress: Dynamic Markov models for bacterial genome compression. BIBM 2016: 776-779 - [c8]Yang Hu, Lingling Zhao, Zhiyan Liu, Hong Ju, Hongbo Shi, Peigang Xu, Yadong Wang, Liang Cheng:
DisSetSim: An online system for calculating similarity between disease sets. BIBM 2016: 1641-1652 - 2015
- [c7]Jiajie Peng, Hongxiang Li, Yadong Wang, Jin Chen:
A web tool for measuring gene semantic similarities by combining gene ontology and gene co-function networks. BCB 2015: 678-679 - 2013
- [c6]Yongtao Ye, David W. Cheung, Yadong Wang, Siu-Ming Yiu, Qing Zhan, Tak Wah Lam, Hing-Fung Ting:
GLProbs: Aligning multiple sequences adaptively. BCB 2013: 152 - [c5]Xiao Zhu, Henry C. M. Leung, Francis Y. L. Chin, Siu-Ming Yiu, Guangri Quan, Bo Liu, Yadong Wang:
PERGA: A Paired-End Read Guided De Novo Assembler for Extending Contigs Using SVM Approach. BCB 2013: 161 - 2011
- [c4]Mingxiang Teng, Yadong Wang, Yunlong Liu, Seongho Kim, Curtis Balch, Kenneth P. Nephew, Lang Li:
Empirical bayes model comparisons for differential methylation analysis. GENSiPS 2011: 9-12 - 2010
- [c3]Peigang Xu, Yadong Wang, Liang Cheng, Tianyi Zang:
Alignment results of SOBOM for OAEI 2010. OM 2010 - 2009
- [c2]Ivan Krivosheev, Lei Du, Hongzhi Wang, Shaojun Zhang, Yadong Wang, Xia Li:
Global Similarity and Local Variance in Human Gene Coexpression Networks. AICI 2009: 159-166 - 2005
- [c1]Haiyun Wang, Qingpu Zhang, Yadong Wang, Xia Li, Shaoqi Rao, Zuquan Ding:
A Novel Feature Ensemble Technology to Improve Prediction Performance of Multiple Heterogeneous Phenotypes Based on Microarray Data. FSKD (2) 2005: 869-879
Informal and Other Publications
- 2016
- [i1]Haozhe Xie, Jie Li, Qiaosheng Zhang, Yadong Wang:
Comparison among dimensionality reduction techniques based on Random Projection for cancer classification. CoRR abs/1608.07019 (2016)
Coauthor Index
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