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Journal Articles
- 2021
[j7]Rui Qiao
, Ngoc Hieu Tran, Lei Xin, Xin Chen, Ming Li, Baozhen Shan, Ali Ghodsi:
Computationally instrument-resolution-independent de novo peptide sequencing for high-resolution devices. Nat. Mach. Intell. 3(5): 420-425 (2021)- [j6]Wenju Zhang, Zhewei Liang, Xin Chen, Lei Xin, Baozhen Shan, Zhigang Luo, Ming Li:
ChimST: An Efficient Spectral Library Search Tool for Peptide Identification from Chimeric Spectra in Data-Dependent Acquisition. IEEE ACM Trans. Comput. Biol. Bioinform. 18(4): 1416-1425 (2021) - 2020
- [j5]Ngoc Hieu Tran, Rui Qiao, Lei Xin, Xin Chen, Baozhen Shan, Ming Li:
Personalized deep learning of individual immunopeptidomes to identify neoantigens for cancer vaccines. Nat. Mach. Intell. 2(12): 764-771 (2020) - 2017
- [j4]Yi Liu, Weiping Sun, Baozhen Shan, Kaizhong Zhang:
DISC: DISulfide linkage Characterization from tandem mass spectra. Bioinform. 33(23): 3861-3870 (2017) - [j3]Ngoc Hieu Tran, Xianglilan Zhang, Lei Xin, Baozhen Shan, Ming Li:
De novo peptide sequencing by deep learning. Proc. Natl. Acad. Sci. USA 114(31): 8247-8252 (2017) - 2010
- [j2]Xiaowen Liu, Baozhen Shan, Lei Xin, Bin Ma:
Better score function for peptide identification with ETD MS/MS spectra. BMC Bioinform. 11(S-1): 4 (2010) - 2008
- [j1]Baozhen Shan, Bin Ma, Kaizhong Zhang, Gilles A. Lajoie:
Complexities and Algorithms for Glycan Sequencing Using Tandem Mass Spectrometry. J. Bioinform. Comput. Biol. 6(1): 77-91 (2008)
Conference and Workshop Papers
- 2022
- [c4]Fang Han, Baozhen Shan, Kaizhong Zhang:
De novo sequencing of multiple SILAC-based tandem mass spectra. ICCI*CC 2022: 1-6 - 2007
- [c3]Baozhen Shan, Bin Ma, Kaizhong Zhang, Gilles A. Lajoie:
Complexities and Algorithms for Glycan Structure Sequencing using Tandem Mass Spectrometry. APBC 2007: 297-306 - 2004
- [c2]Baozhen Shan:
Stochastic Context-Free Graph Grammars for Glycoprotein Modelling. CIAA 2004: 247-258 - 2003
- [c1]Lucian Ilie, Baozhen Shan, Sheng Yu:
Fast Algorithms for Extended Regular Expression Matching and Searching. STACS 2003: 179-190
Informal and Other Publications
- 2020
- [i4]Fatema Tuz Zohora, M. Ziaur Rahman, Ngoc Hieu Tran, Lei Xin, Baozhen Shan, Ming Li:
PointIso: Point Cloud Based Deep Learning Model for Detecting Arbitrary-Precision Peptide Features in LC-MS Map through Attention Based Segmentation. CoRR abs/2009.07250 (2020) - 2019
- [i3]Rui Qiao, Ngoc Hieu Tran, Ming Li, Lei Xin, Baozhen Shan, Ali Ghodsi:
DeepNovoV2: Better de novo peptide sequencing with deep learning. CoRR abs/1904.08514 (2019) - 2018
- [i2]Fatema Tuz Zohora, Ngoc Hieu Tran, Xianglilan Zhang, Lei Xin, Baozhen Shan, Ming Li:
DeepIso: A Deep Learning Model for Peptide Feature Detection. CoRR abs/1801.01539 (2018) - 2017
- [i1]Ngoc Hieu Tran, Zachariah Levine, Lei Xin, Baozhen Shan, Ming Li:
Protein identification with deep learning: from abc to xyz. CoRR abs/1710.02765 (2017)
Coauthor Index
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