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2020 – today
- 2024
[j14]Xianghu Jia, Weiwen Luo, Jiaqi Li, Jieqi Xing, Hongjie Sun, Shunyao Wu, Xiaoquan Su:
A deep learning framework for predicting disease-gene associations with functional modules and graph augmentation. BMC Bioinform. 25(1): 214 (2024)- 2023
- [j13]Shunyao Wu, Zhiruo Li, Yuzhu Chen, Mingqian Zhang, Yangyang Sun, Jieqi Xing, Fengyang Zhao, Shi Huang, Rob Knight, Xiaoquan Su
:
Host-Variable-Embedding Augmented Microbiome-Based Simultaneous Detection of Multiple Diseases by Deep Learning. Adv. Intell. Syst. 5(12) (2023) - [j12]Mingqian Zhang, Wenke Zhang, Yuzhu Chen, Jin Zhao, Shunyao Wu, Xiaoquan Su:
Flex Meta-Storms elucidates the microbiome local beta-diversity under specific phenotypes. Bioinform. 39(4) (2023) - 2020
- [j11]Gongchao Jing, Yufeng Zhang, Ming Yang, Lu Liu, Jian Xu, Xiaoquan Su:
Dynamic Meta-Storms enables comprehensive taxonomic and phylogenetic comparison of shotgun metagenomes at the species level. Bioinform. 36(7): 2308-2310 (2020)
2010 – 2019
- 2016
- [j10]Gabriel H. Murillo, Na You, Xiaoquan Su, Wei Cui, Muredach P. Reilly, Mingyao Li, Kang Ning, Xinping Cui:
MultiGeMS: detection of SNVs from multiple samples using model selection on high-throughput sequencing data. Bioinform. 32(10): 1486-1492 (2016) - 2015
- [j9]Shiwei Sun, Xuetao Wang, Xin Gao, Lihui Ren, Xiaoquan Su, Dongbo Bu, Kang Ning:
Condensing Raman spectrum for single-cell phenotype analysis. BMC Bioinform. 16(S18): S15 (2015) - [j8]Xiaoquan Su, Xiaojun Wang, Gongchao Jing, Shi Huang, Jian Xu, Kang Ning:
Application of Meta-Mesh on the analysis of microbial communities from human associated-habitats. Quant. Biol. 3(1): 4-18 (2015) - 2014
- [j7]Xiaoquan Su, Xuetao Wang, Gongchao Jing, Kang Ning:
GPU-Meta-Storms: computing the structure similarities among massive amount of microbial community samples using GPU. Bioinform. 30(7): 1031-1033 (2014) - [j6]Peng Yang, Xiaoquan Su, Le Ou-Yang, Hon Nian Chua, Xiaoli Li, Kang Ning:
Microbial community pattern detection in human body habitats via ensemble clustering framework. BMC Syst. Biol. 8(S-4): S7 (2014) - [j5]Qian Zhou, Xiaoquan Su, Gongchao Jing, Kang Ning:
Meta-QC-Chain: Comprehensive and Fast Quality Control Method for Metagenomic Data. Genom. Proteom. Bioinform. 12(1): 52-56 (2014) - [j4]Xinwei Cheng, Xiaohua Chen, Xiaoquan Su, Huanxin Zhao, Maozhen Han, Cunpei Bo, Jian Xu, Hong Bai, Kang Ning:
DNA Extraction Protocol for Biological Ingredient Analysis of Liuwei Dihuang Wan. Genom. Proteom. Bioinform. 12(3): 137-143 (2014) - [i1]Peng Yang, Xiaoquan Su, Le Ou-Yang, Hon Nian Chua, Xiaoli Li, Kang Ning:
Microbial community pattern detection in human body habitats via ensemble clustering framework. CoRR abs/1412.7384 (2014) - 2012
- [j3]Na You, Gabriel H. Murillo, Xiaoquan Su, Xiaowei Zeng, Jian Xu, Kang Ning, Shoudong Zhang, Jiankang Zhu, Xinping Cui:
SNP calling using genotype model selection on high-throughput sequencing data. Bioinform. 28(5): 643-650 (2012) - [j2]Xiaoquan Su, Jian Xu, Kang Ning:
Meta-Storms: efficient search for similar microbial communities based on a novel indexing scheme and similarity score for metagenomic data. Bioinform. 28(19): 2493-2501 (2012) - [j1]Xiaoquan Su, Jian Xu, Kang Ning:
Parallel-META: efficient metagenomic data analysis based on high-performance computation. BMC Syst. Biol. 6(S-1): S16 (2012) - [c2]Wei Fang, Xingzhi Chang, Xiaoquan Su, Jian Xu, Deli Zhang, Kang Ning:
A machine learning framework of functional biomarker discovery for different microbial communities based on metagenomic data. ISB 2012: 106-112 - 2011
- [c1]Xiaoquan Su, Yongzheng Ma, Hongwei Yang, Xingzhi Chang, Kai Nan, Jian Xu, Kang Ning:
An Open-source Collaboration Environment for Metagenomics Research. eScience 2011: 7-14
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