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2010 – 2019
- 2018
[j8]Tara N. Furstenau
, Jill H. Cocking, Jason W. Sahl, Viacheslav Fofanov:
Variant site strain typer (VaST): efficient strain typing using a minimal number of variant genomic sites. BMC Bioinform. 19(1): 222:1-222:13 (2018)- 2010
- [j7]Drew H. Bryant, Mark Moll, Brian Y. Chen, Viacheslav Fofanov, Lydia E. Kavraki:
Analysis of substructural variation in families of enzymatic proteins with applications to protein function prediction. BMC Bioinform. 11: 242 (2010)
2000 – 2009
- 2009
- [j6]Antonio Martínez-Alcántara, Efren Ballesteros, Chen Feng, Mark Rojas, H. Koshinsky, Viacheslav Fofanov, Paul Havlak, Yuriy Fofanov:
PIQA: pipeline for Illumina G1 genome analyzer data quality assessment. Bioinform. 25(18): 2438-2439 (2009) - 2008
- [j5]David M. Kristensen, R. Matthew Ward, Andreas Martin Lisewski, Serkan Erdin, Brian Y. Chen, Viacheslav Fofanov, Marek Kimmel, Lydia E. Kavraki, Olivier Lichtarge:
Prediction of enzyme function based on 3D templates of evolutionarily important amino acids. BMC Bioinform. 9 (2008) - 2007
- [j4]Chris Reed, Viacheslav Fofanov, Catherine Putonti, Sergei Chumakov, Tom Slezak, Yuriy Fofanov:
Effect of the mutation rate and background size on the quality of pathogen identification. Bioinform. 23(20): 2665-2671 (2007) - [j3]Brian Y. Chen, Drew H. Bryant, Viacheslav Fofanov, David M. Kristensen, Amanda E. Cruess, Marek Kimmel, Olivier Lichtarge, Lydia E. Kavraki:
Cavity Scaling: Automated Refinement of Cavity-Aware motifs in protein Function Prediction. J. Bioinform. Comput. Biol. 5(2a): 353-382 (2007) - [j2]Brian Y. Chen, Viacheslav Fofanov, Drew H. Bryant, Bradley D. Dodson, David M. Kristensen, Andreas Martin Lisewski, Marek Kimmel, Olivier Lichtarge, Lydia E. Kavraki:
The MASH Pipeline for Protein Function Prediction and an Algorithm for the Geometric Refinement of 3D Motifs. J. Comput. Biol. 14(6): 791-816 (2007) - [c3]Aaron Skewes, Michael Quance, Catherine Putonti, Viacheslav Fofanov, Yuriy Fofanov:
Statistical Properties of Short n-mers Located in the One Mismatch Area of Microbial Genomes. BIOCOMP 2007: 760-766 - 2006
- [c2]Brian Y. Chen, Viacheslav Fofanov, Drew H. Bryant, Bradley D. Dodson, David M. Kristensen, Andreas Martin Lisewski, Marek Kimmel, Olivier Lichtarge, Lydia E. Kavraki:
Geometric Sieving: Automated Distributed Optimization of 3D Motifs for Protein Function Prediction. RECOMB 2006: 500-515 - 2005
- [c1]Brian Y. Chen, Viacheslav Fofanov, David M. Kristensen, Marek Kimmel, Olivier Lichtarge, Lydia E. Kavraki:
Algorithms for Structural Comparison and Statistical Analysis of 3D Protein Motifs. Pacific Symposium on Biocomputing 2005 - 2004
- [j1]Yuriy Fofanov, Yi Luo, Charles Katili, Jim Wang, Yuri Belosludtsev, Thomas Powdrill, Chetan Belapurkar, Viacheslav Fofanov, Tong-Bin Li, Sergei Chumakov, B. Montgomery Pettitt:
How independent are the appearances of n-mers in different genomes? Bioinform. 20(15): 2421-2428 (2004)
Coauthor Index
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