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ORCIDStephen F. Altschul
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2020 – today
- 2021
[j17]Andrew F. Neuwald
, Bryan D. Kolaczkowski, Stephen F. Altschul:
eCOMPASS: evaluative comparison of multiple protein alignments by statistical score. Bioinform. 37(20): 3456-3463 (2021)
2010 – 2019
- 2018
- [j16]Nidhi Shah, Stephen F. Altschul, Mihai Pop:
Outlier detection in BLAST hits. Algorithms Mol. Biol. 13(1): 7:1-7:9 (2018) - [j15]Stephen F. Altschul, Andrew F. Neuwald:
Initial Cluster Analysis. J. Comput. Biol. 25(2): 121-129 (2018) - [j14]Andrew F. Neuwald, Stephen F. Altschul:
Statistical investigations of protein residue direct couplings. PLoS Comput. Biol. 14(12) (2018) - 2017
- [c4]Nidhi Shah, Stephen F. Altschul, Mihai Pop:
Outlier Detection in BLAST Hits. WABI 2017: 23:1-23:11 - 2016
- [j13]Andrew F. Neuwald, Stephen F. Altschul:
Bayesian Top-Down Protein Sequence Alignment with Inferred Position-Specific Gap Penalties. PLoS Comput. Biol. 12(5) (2016) - [j12]Andrew F. Neuwald, Stephen F. Altschul:
Inference of Functionally-Relevant N-acetyltransferase Residues Based on Statistical Correlations. PLoS Comput. Biol. 12(12) (2016) - 2015
- [j11]Yi-Kuo Yu, John A. Capra, Aleksandar Stojmirovic, David Landsman, Stephen F. Altschul:
Log-odds sequence logos. Bioinform. 31(3): 324-331 (2015) - 2013
- [j10]Viet-An Nguyen, Jordan L. Boyd-Graber, Stephen F. Altschul:
Dirichlet Mixtures, the Dirichlet Process, and the Structure of Protein Space. J. Comput. Biol. 20(1): 1-18 (2013) - 2011
- [j9]Xugang Ye, Guoli Wang, Stephen F. Altschul:
An assessment of substitution scores for protein profile-profile comparison. Bioinform. 27(24): 3356-3363 (2011) - [j8]Yi-Kuo Yu, Stephen F. Altschul:
The Complexity of the Dirichlet Model for Multiple Alignment Data. J. Comput. Biol. 18(8): 925-939 (2011) - [j7]Xugang Ye, Yi-Kuo Yu, Stephen F. Altschul:
On the Inference of Dirichlet Mixture Priors for Protein Sequence Comparison. J. Comput. Biol. 18(8): 941-954 (2011) - 2010
- [j6]Xugang Ye, Yi-Kuo Yu, Stephen F. Altschul:
Compositional Adjustment of Dirichlet Mixture Priors. J. Comput. Biol. 17(12): 1607-1620 (2010) - [j5]Stephen F. Altschul, John C. Wootton, Elena Zaslavsky, Yi-Kuo Yu:
The Construction and Use of Log-Odds Substitution Scores for Multiple Sequence Alignment. PLoS Comput. Biol. 6(7) (2010)
2000 – 2009
- 2008
- [c3]Aleksandar Stojmirovic, E. Michael Gertz, Stephen F. Altschul, Yi-Kuo Yu:
The effectiveness of position- and composition-specific gap costs for protein similarity searches. ISMB 2008: 15-23 - [r1]Stephen F. Altschul, Bruce W. Erickson, Henry Leung:
Local Alignment (with Affine Gap Weights). Encyclopedia of Algorithms 2008 - 2005
- [j4]Yi-Kuo Yu, Stephen F. Altschul:
The construction of amino acid substitution matrices for the comparison of proteins with non-standard compositions. Bioinform. 21(7): 902-911 (2005) - [j3]Maricel G. Kann, Paul A. Thiessen, Anna R. Panchenko, Alejandro A. Schäffer, Stephen F. Altschul, Stephen H. Bryant:
A structure-based method for protein sequence alignment. Bioinform. 21(8): 1451-1456 (2005)
1990 – 1999
- 1999
- [j2]Alejandro A. Schäffer, Yuri I. Wolf, Chris P. Ponting, Eugene V. Koonin, L. Aravind, Stephen F. Altschul:
IMPALA: matching a protein sequence against a collection of PSI-BLAST-constructed position-specific score matrices. Bioinform. 15(12): 1000-1011 (1999) - 1994
- [c2]Charles E. Lawrence, Stephen F. Altschul, John C. Wootton, Mark S. Boguski, Andrew F. Neuwald, Jun S. Liu:
A Gibbs Sampler for the Detection of Subtle Motifs in Multiple Sequences. HICSS (5) 1994: 245-254 - 1991
- [c1]C. Thomas White, Raj K. Singh, Peter B. Reintjes, Jordan Lampe, Bruce W. Erickson, Wayne D. Dettloff, Vernon L. Chi, Stephen F. Altschul:
BioSCAN: A VLSI-Based System for Biosequence Analysis. ICCD 1991: 504-509
1980 – 1989
- 1989
- [j1]Stephen F. Altschul:
Leaf Pairs and Tree Dissections. SIAM J. Discret. Math. 2(3): 293-299 (1989)
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