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ORCIDBenno Schwikowski
Person information
- affiliation: Institut Pasteur, Paris, France
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Journal Articles
- 2022
[j18]Farzaneh Firoozbakht
, Behnam Yousefi, Benno Schwikowski:
An overview of machine learning methods for monotherapy drug response prediction. Briefings Bioinform. 23(1) (2022)- 2017
- [j17]Cheikh Loucoubar, Audrey V. Grant, Jean-François Bureau, Isabelle Casademont, Ndjido Ardo Bar, Avner Bar-Hen, Mamadou Diop, Joseph Faye, Fatoumata Diene Sarr, Abdoulaye Badiane, Adama Tall, Jean-François Trape, Freddy Cliquet, Benno Schwikowski, Mark Lathrop, Richard Edward Paul, Anavaj Sakuntabhai:
Detecting multi-way epistasis in family-based association studies. Briefings Bioinform. 18(3): 394-402 (2017) - [j16]Frederik Gwinner, Gwénola Boulday, Claire Vandiedonck, Minh Arnould, Cécile Cardoso, Iryna Nikolayeva, Oriol Guitart-Pla, Cécile V. Denis, Olivier D. Christophe, Johann Beghain, Elisabeth Tournier-Lasserve, Benno Schwikowski:
Network-based analysis of omics data: the LEAN method. Bioinform. 33(5): 701-709 (2017) - 2015
- [j15]Oriol Guitart-Pla, Manjunath Kustagi, Frank Rügheimer, Andrea Califano, Benno Schwikowski:
The Cyni framework for network inference in Cytoscape. Bioinform. 31(9): 1499-1501 (2015) - 2012
- [j14]Sébastien Li-Thiao-Té, Benno Schwikowski:
Feature Detection with Controlled Error Rates in LC/MS Images. J. Comput. Biol. 19(4): 349-364 (2012) - [j13]Laura Elo, Benno Schwikowski:
Mining proteomic data for biomedical research. WIREs Data Mining Knowl. Discov. 2(1): 1-13 (2012) - 2010
- [j12]Aurélien Mazurie, Danail Bonchev, Benno Schwikowski, Gregory A. Buck:
Evolution of metabolic network organization. BMC Syst. Biol. 4: 59 (2010) - 2008
- [j11]Aurélien Mazurie, Danail Bonchev, Benno Schwikowski, Gregory A. Buck:
Phylogenetic distances are encoded in networks of interacting pathways. Bioinform. 24(22): 2579-2585 (2008) - 2007
- [j10]Olivier Garcia, Cosmin Saveanu, Melissa S. Cline, Micheline Fromont-Racine, Alain Jacquier, Benno Schwikowski, Tero Aittokallio:
GOlorize: a Cytoscape plug-in for network visualization with Gene Ontology-based layout and coloring. Bioinform. 23(3): 394-396 (2007) - 2006
- [j9]Tero Aittokallio, Benno Schwikowski:
Graph-based methods for analysing networks in cell biology. Briefings Bioinform. 7(3): 243-255 (2006) - 2005
- [j8]David J. Reiss, Iliana Avila-Campillo, Vesteinn Thorsson, Benno Schwikowski, Timothy Galitski:
Tools enabling the elucidation of molecular pathways active in human disease: Application to Hepatitis C virus infection. BMC Bioinform. 6: 154 (2005) - 2004
- [j7]Amir Ben-Dor, Tzvika Hartman, Richard M. Karp, Benno Schwikowski, Roded Sharan, Zohar Yakhini:
Towards Optimally Multiplexed Applications of Universal Arrays. J. Comput. Biol. 11(2/3): 476-492 (2004) - 2003
- [j6]Benno Schwikowski, Martin Vingron:
Weighted sequence graphs: boosting iterated dynamic programming using locally suboptimal solutions. Discret. Appl. Math. 127(1): 95-117 (2003) - [j5]Amir Ben-Dor, Richard M. Karp, Benno Schwikowski, Ron Shamir:
The Restriction Scaffold Problem. J. Comput. Biol. 10(3/4): 385-398 (2003) - 2002
- [j4]Benno Schwikowski, Ewald Speckenmeyer:
On enumerating all minimal solutions of feedback problems. Discret. Appl. Math. 117(1-3): 253-265 (2002) - [j3]Mathieu Blanchette, Benno Schwikowski, Martin Tompa:
Algorithms for Phylogenetic Footprinting. J. Comput. Biol. 9(2): 211-223 (2002) - 2000
- [j2]Amir Ben-Dor, Richard M. Karp, Benno Schwikowski, Zohar Yakhini:
Universal DNA Tag Systems: A Combinatorial Design Scheme. J. Comput. Biol. 7(3-4): 503-519 (2000) - 1997
- [j1]Benno Schwikowski, Martin Vingron:
The Deferred Path Heuristic for the Generalized Tree Alignment Problem. J. Comput. Biol. 4(3): 415-431 (1997)
Conference and Workshop Papers
- 2024
- [c12]Johann Dréo, Claire Laudy, Sebastian Lobentanzer, Marko Baric, Ekaterina Gaydukova, Benno Schwikowski:
Reproducible Mapping of Tabular Data into Semantic Knowledge Graphs with OntoWeaver and BioCypher. FUSION 2024: 1-8 - 2010
- [c11]Søren Besenbacher, Benno Schwikowski, Jens Stoye:
Indexing and Searching a Mass Spectrometry Database. Algorithms and Applications 2010: 62-76 - 2004
- [c10]David J. Reiss, Benno Schwikowski:
Predicting protein-peptide interactions via a network-based motif sampler. ISMB/ECCB (Supplement of Bioinformatics) 2004: 274-282 - 2003
- [c9]Amir Ben-Dor, Tzvika Hartman, Benno Schwikowski, Roded Sharan, Zohar Yakhini:
Towards optimally multiplexed applications of universal DNA tag systems. RECOMB 2003: 48-56 - 2002
- [c8]Benno Schwikowski:
Algorithmic Challenges in Mass Spectrometry and Systems Biology. GI Jahrestagung (Ergänzungsband) 2002: 66 - [c7]Trey Ideker, Owen Ozier, Benno Schwikowski, Andrew F. Siegel:
Discovering regulatory and signalling circuits in molecular interaction networks. ISMB 2002: 233-240 - [c6]Amir Ben-Dor, Richard M. Karp, Benno Schwikowski, Ron Shamir:
The restriction scaffold problem. RECOMB 2002: 58-66 - 2000
- [c5]Mathieu Blanchette, Benno Schwikowski, Martin Tompa:
An Exact Algorithm to Identify Motifs in Orthologous Sequences from Multiple Species. ISMB 2000: 37-45 - [c4]Amir Ben-Dor, Richard M. Karp, Benno Schwikowski, Zohar Yakhini:
Universal DNA tag systems: a combinatorial design scheme. RECOMB 2000: 65-75 - 1997
- [c3]Benno Schwikowski, Martin Vingron:
The deferred path heuristic for the generalized tree alignment problem. RECOMB 1997: 257-266 - 1996
- [c2]Benno Schwikowski, Martin Vingron:
A Clustering Approach to Generalized Tree Alignment with Application to Alu Repeats. German Conference on Bioinformatics - Selected Papers 1996: 115-124 - [c1]Benno Schwikowski, Martin Vingron:
Attacking Generalized tree Alignment by a Deferred Path Heuristic. German Conference on Bioinformatics 1996: 302-304
Informal and Other Publications
- 2018
- [i2]Barry Demchak, David Otasek, Alexander R. Pico, Gary D. Bader, Keiichiro Ono, Brett Settle, Eric Sage, John H. Morris, William J. R. Longabaugh, Christian Tannus Lopes, Michael Kucera, Adam Treister, Benno Schwikowski, Piet Molenaar, Trey Ideker:
The Cytoscape Automation app article collection. F1000Research 7: 800 (2018) - 2014
- [i1]Alexander R. Pico, Gary D. Bader, Barry Demchak, Oriol Guitart Pla, Timothy Hull, William J. R. Longabaugh, Christian Tannus Lopes, Samad Lotia, Piet Molenaar, Jason Montojo, John H. Morris, Keiichiro Ono, Benno Schwikowski, David Welker, Trey Ideker:
The Cytoscape app article collection. F1000Research 3: 138 (2014)
Coauthor Index
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